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Dynamic Adaptive Changes of the Ileum Transposed to the Proximal Small Intestine in Rats

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Abstract

Background

Ileal transposition (IT) is an experimental surgery to investigate the role of the distal ileum in Roux-en-Y gastric bypass (RYGB) surgery. To systematically investigate the dynamic adaptation process of the ileum after IT, we performed transcriptome analyses of the transposed ileum compared with the ileum in situ at different postoperative time points.

Methods

Sprague-Dawley rats fed a chow diet underwent IT or sham surgery. One and 4 weeks after IT or sham surgery, total RNA was extracted from the ileal tissue and subjected to transcriptome analyses using microarray.

Results

Principal component analysis showed that the difference between weeks 1 and 4 was the largest, and the differences between the IT and sham groups were larger in week 4 than in week 1. We identified 1792 differentially expressed genes (DEGs) between IT and sham ileal tissues, including 659 and 1133 DEGs in weeks 1 and 4, respectively. Interestingly, only 45 and 24 DEGs were commonly up- or downregulated in weeks 1 and 4, indicating a marked transition during the adaptation process. Functional enrichment and network analyses showed that structural adaptation predominantly occurred in week 1, while metabolic and immune adaptations predominantly occurred in week 4. These analyses further revealed potential components that modulate structural adaptation (e.g., extracellular matrix) in week 1 and metabolic (e.g., glucose transporter) and immune (e.g., Th17 cells) adaptations in week 4.

Conclusions

The transposed distal ileum underwent dynamic adaptation processes that may help explain the metabolic changes after RYGB.

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Funding

This research was supported by a grant from the Korea Health Technology R&D Project through the Korea Health Industry Development Institute (KHIDI), funded by the Ministry of Health & Welfare, Republic of Korea (HI14C1277); a grant from the Institute for Basic Science (IBS-R013-A1); and a grant from KBRI basic research program through the Korea Brain Research Institute funded by the Ministry of Science and ICT (20180043).

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Correspondence to Daehee Hwang or Young Min Cho.

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Competing Interests

The authors declare that they have no conflicts of interest.

Statement of Animal Rights/Ethical Approval

All animal experiments were approved by the Institutional Animal Care and Use Committee of Seoul National University Hospital (approval no. 13-0273).

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Electronic Supplementary Material

Supplementary Method

. Detailed protocol of Histology and immunohistochemistry, analysis of gene expression data, and network analysis. (DOCX 30 kb)

Supplementary Figure S1

Correlation between the key gene expression levels measured by microarray and RT-PCR. Data are presented as the log2-fold-change compared to the mean value of the control group (sham group). Linear regression analysis was performed to calculate Pearson’s correlation coefficient and the P value. (PNG 201 kb)

High resolution image (TIF 9417 kb)

Supplementary Table S1.

Primers for qRT-PCR analysis of key genes. (DOCX 12 kb)

Supplementary Table S2.

List of differentially expressed genes (DEGs). For each DEG, the Entrez ID, gene symbol (HUGO), and gene description are shown together with the log2-fold-change and false discovery rate from the comparisons of the IT and sham groups in weeks 1 and 4 after surgery. Additionally, the cluster (C1-8) to which the DEG belongs and whether the DEG showed up-regulation (1), down-regulation (-1), or no change in the comparisons are noted. (XLSX 206 kb)

Supplementary Table S3.

GOBPs enriched by genes in C1-8. For each GOBP, the description of the GOBP (GOTERM_BP) is shown together with the number of DEGs (Count) involved in the GOBP in each cluster and the enrichment P-value (P-value) for the GOBP. The GOBPs shown in Figure 2B are denoted by a red background. (XLSX 92 kb)

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Ahn, C.H., Chae, S., Oh, T.J. et al. Dynamic Adaptive Changes of the Ileum Transposed to the Proximal Small Intestine in Rats. OBES SURG 29, 2399–2408 (2019). https://doi.org/10.1007/s11695-019-03858-9

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