Abstract
Carcinomas often utilize epithelial-mesenchymal transition (EMT) programs for cancer progression and metastasis. Numerous studies report SNAIL-induced miR200/Zeb feedback circuit as crucial in regulating EMT by placing cancer cells in at least three phenotypic states, viz. epithelial (E), hybrid (h-E/M), mesenchymal (M), along the E-M phenotypic spectrum. However, a coherent molecular-level understanding of how such a tiny circuit controls carcinoma cell entrance into and residence in various states is lacking. Here, we use molecular binding data and mathematical modeling to report that the miR200/Zeb circuit can essentially utilize combinatorial cooperativity to control E-M phenotypic plasticity. We identify minimal combinatorial cooperativities that give rise to E, h-E/M, and M phenotypes. We show that disrupting a specific number of miR200 binding sites on Zeb as well as Zeb binding sites on miR200 can have phenotypic consequences—the circuit can dynamically switch between two (E, M) and three (E, h-E/M, M) phenotypes. Further, we report that in both SNAIL-induced and SNAIL knock-out miR200/Zeb circuits, cooperative transcriptional feedback on Zeb as well as Zeb translation inhibition due to miR200 are essential for the occurrence of intermediate h-E/M phenotype. Finally, we demonstrate that SNAIL can be dispensable for EMT, and in the absence of SNAIL, the transcriptional feedback can control cell state transition from E to h-E/M, to M state. Our results thus highlight molecular-level regulation of EMT in miR200/Zeb circuit and we expect these findings to be crucial to future efforts aiming to prevent EMT-facilitated dissemination of carcinomas.
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Acknowledgements
We benefited from useful discussions with Prof. Mohit Kumar Jolly, Department of Bioengineering, Indian Institute of Science, Bangalore, India. We gratefully acknowledge funding by the Department of Science and Technology (DST), Govt. of India, to MR (grant number: DST/INSPIRE/04/2020/001492).
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The Funding was provided by DST, Govt of India, DST/INSPIRE/04/2020/001492, Mubasher Rashid
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MR: Conceptualization, methodology, simulations, data analysis, supervision, funding acquisition, writing—original draft as well as revision. BMD: Data analysis and simulations. MB: discussions and simulations.
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Rashid, M., Devi, B.M. & Banerjee, M. Combinatorial Cooperativity in miR200-Zeb Feedback Network can Control Epithelial–Mesenchymal Transition. Bull Math Biol 86, 48 (2024). https://doi.org/10.1007/s11538-024-01277-1
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DOI: https://doi.org/10.1007/s11538-024-01277-1