Abstract
Fifty rhizobial isolates of Lathyrus and Oxytropis collected from northern regions of China were studied in their genotypic characterization based upon analyses of ARDRA, 16S-23S IGS PCR-RFLP, TP-RAPD, MLEE, sequences of 16S rDNA gene and housekeeping genes of atpD, recA and glnII. The results demonstrated that most of the Lathyrus rhizobia belonged to Rhizobium and most of the Oxytropis rhizobia belonged to Sinorhizobium. A novel group of Rhizobium sp. I and S. meliloti were identified as the main microsymbionts respectively associated with Lathyrus and Oxytropis species in the collection area, which were new associations between rhizobia and the mentioned hosts. This study also provides new evidence for biogeography of rhizobia.
Similar content being viewed by others
References
Drouin P, Prevost D, Antoun H. Classification of bacteria nodulating Lathyrus japonicus and Lathyrus pratensis in Northern Quebec as strains of Rhizobium leguminosarum biovar viciae. Int J Syst Bacteriol, 1996, 46: 1016–1024 8863431, 1:STN:280:DyaK2s%2Fhs1yjtw%3D%3D
Chase L A, Peterson N L, Koerner J F. The lathyrus toxin, beta-N-oxalyl-L-alpha, beta-diaminopropionic acid (ODAP), and homocysteic acid sensitize CA1 pyramidal neurons to cystine and L-2-amino-6-phosphonohexanoic acid. Toxicol Appl Pharmacol, 2007, 219: 1–9 17234231, 10.1016/j.taap.2006.11.027, 1:CAS:528:DC%2BD2sXitFOnurk%3D
Panda G C, Das S K, Guha A K. Biosorption of cadmium and nickel by functionalized husk of Lathyrus sativus. Colloids Surf B Biointerfaces, 2008, 62: 173–179 17997083, 10.1016/j.colsurfb.2007.09.034, 1:CAS:528:DC%2BD1cXisVWjtr8%3D
Kuykendall L D, Young J M, Martinez-Romero E, et al. Genus I. Rhizobium Frank 1889, 338AL. In: Brenner D J, Krieg N R, Staley J T, et al., eds. Bergey’s Manual of Systematic Bacteriology. 2nd Edition, Vol 2. East Langsing, USA: Springer, 2005. 325–340
Mantelin S, Saux M F, Zakhia F, et al. Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov. Int J Syst Evol Microbiol, 2006, 56: 827–839 1:CAS:528:DC%2BD28XkvFGns7c%3D
Kan F L, Chen Z Y, Wang E T, et al. Characterization of symbiotic and endophytic bacteria isolated from root nodules of herbaceous legumes grown in Qinghai-Tibet plateau and in other zones of China. Arch Microbiol, 2007, 188: 103–115 17541555, 10.1007/s00203-007-0211-3, 1:CAS:528:DC%2BD2sXotVaju74%3D
Laguerre G, van Berkum P, Amarger N, et al. Genetic diversity of rhizobial symbionts isolated from legume species within genera Astragalus, Oxytropis, and Onobrychis. Appl Environ Microbiol, 1997, 63: 4748–4758 9406393, 1:CAS:528:DyaK2sXnvV2rtrc%3D
Vincent J A. Manual for the Practical Study of Root Nodule Bacteria. International Biological Programme Handbook. Oxford: Blackwell Sci Publ, 1970. 15–39
Martens M, Dawyndt P, Coopman R, et al. Advantages of multilocus sequence analysis for taxonomic studies: A case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). Int J Syst Evol Microbiol, 2008, 58: 200–214 18175710, 10.1099/ijs.0.65392-0, 1:CAS:528:DC%2BD1cXis1anurc%3D
Terefework Z, Kaijalainen S, Lindström K. AFLP fingerprinting as a tool to study the genetic diversity of Rhizobium galegae isolated from Galega orientalis and Galega officinalis. J Biotechnol, 2001, 91: 169–180 11566388, 10.1016/S0168-1656(01)00338-8, 1:CAS:528:DC%2BD3MXmvVKltLk%3D
Tan Z Y, Xu X D, Wang E T, et al. Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia. Int J Syst Bacteriol, 1997, 47: 874–879 9226921, 1:CAS:528:DyaK2sXkvFChur0%3D
Wang E T, Rogel M A, GarcÍa-de L S A, et al. Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis. Int J Syst Bacteriol, 1999, 49: 1479–1491 10555329, 1:CAS:528:DyaK1MXnsFGit7s%3D, 10.1099/00207713-49-4-1479
Hurek T, Wagner B, Reinhold-Hurek B. Identification of N2-fixing plant- and fungus-associated Azoarcus species by PCR-based genomic fingerprints. Appl Environ Microbiol, 1997, 63: 4331–4339 9361420, 1:CAS:528:DyaK2sXnt12nt78%3D
Kumar S, Tamura K, Nei M. MEGA 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinfor, 2004, 5: 150–163 10.1093/bib/5.2.150, 1:CAS:528:DC%2BD2cXntFGqu7s%3D
Nei M, Li W H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA, 1979, 76: 5269–5273 291943, 10.1073/pnas.76.10.5269, 1:CAS:528:DyaL3cXitVWn
Rasolomampianina R, Bailly X, Fetiarison R, et al. Nitrogen-fixing nodules from rose wood legume trees (Dalbergia spp.) endemic to Madagascar host seven different genera belonging to α- and β-Proteobacteria. Mol Ecol, 2005, 14: 4135–4146 16262864, 10.1111/j.1365-294X.2005.02730.x, 1:CAS:528:DC%2BD2MXht1OltbfM
Rivas R, Velázquez E, Valverde A, et al. A two primers random amplified polymorphic DNA procedure to obtain polymerase chain reaction fingerprints of bacterial species. Electrophoresis, 2001, 22: 1086–1089 11358129, 10.1002/1522-2683()22:6<1086::AID-ELPS1086>3.0.CO;2-6, 1:CAS:528:DC%2BD3MXjslWiu7s%3D
Caballero-mellado J, Martinez-Romero E. Limited genetic diversity in the endophytic sugarcane bacterium Acetobacter diazotrophicus. Appl Environ Microbiol, 1994, 60(5): 1532–1537 16349254, 1:CAS:528:DyaK2cXjtF2iur0%3D
Selander R K, Caugant D N, Ochman H, et al. Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics, Appl Environ Microbiol, 1986, 51(5): 873–884 2425735, 1:CAS:528:DyaL28XktVanu7k%3D
Sneath P H A, Sokal R R. Numerical Taxonomy. San Francisco: W. H. Freeman & Co., 1973
Vinuesa P, Rademaker J L, de Bruijn F J, et al. Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR-restriction fragment length polymorphism analysis of genes encoding 16S rRNA (16S rDNA) and 16S-23S rDNA intergenic spacers, repetitive extragenic palindromic PCR genomic fingerprinting, and partial 16S rDNA sequencing. Appl Environ Microbiol, 1998, 64: 2096–2104 9603820, 1:CAS:528:DyaK1cXjslWhsLk%3D
Tian C F, Wang E T, Han T X, et al. Genetic diversity of rhizobia associated with Vicia faba in three ecological regions of China. Arch Microbiol, 2007, 188: 273–282 17479251, 10.1007/s00203-007-0245-6, 1:CAS:528:DC%2BD2sXosFenurg%3D
Vandamme P, Pot B, Gillis M, et al. Polyphasic taxonomy: a consensus approach to bacterial systematics. Microbiol Rev, 1996, 60: 407–38 8801440, 1:CAS:528:DyaK28XktVejtbc%3D
Mnasri B, Mrabet M, Laguerre G, et al. Salt-tolerant rhizobia isolated from a Tunisian oasis that are highly effective for symbiotic N2-fixation with Phaseolus vulgaris constitute a novel biovar (bv. mediterranense) of Sinorhizobium meliloti. Arch Microbiol, 2007, 187: 79–85 17019605, 10.1007/s00203-006-0173-x, 1:CAS:528:DC%2BD28XhtlCksbzI
Martiny J B H, Bohannan B J M, Brown J H, et al. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol, 2006, 4: 102–112 16415926, 10.1038/nrmicro1341, 1:CAS:528:DC%2BD28XksVyhsA%3D%3D
Gu C T, Wang E T, Sui X H, et al. Diversity and geographical distribution of rhizobia associated with Lespedeza spp. in temperate and subtropical regions of China. Arch Microbiol, 2007, 188: 355–365 17530227, 10.1007/s00203-007-0256-3, 1:CAS:528:DC%2BD2sXhtVCnsLrK
Lin D X, Man C X, Wang E T, et al. Diverse rhizobia that nodulate two species of Kummerowia in China. Arch microbial, 2007, 188: 495–507 10.1007/s00203-007-0271-4, 1:CAS:528:DC%2BD2sXhtFKiurbE
Author information
Authors and Affiliations
Corresponding author
Additional information
Supported by the National Program for Basic S&T Platform Construction (Grant No. 2005DKA21201-1), the National Natural Science Foundation of China (Grant No. 30670001), and the National Basic Research Program of China (Grant No. 2006CB100206)
Rights and permissions
About this article
Cite this article
XinHua, S., LiLi, H., EnTao, W. et al. Novel associations between rhizobial populations and legume species within the genera Lathyrus and O xytropis grown in the temperate region of China. SCI CHINA SER C 52, 182–192 (2009). https://doi.org/10.1007/s11427-008-0132-7
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11427-008-0132-7