Abstract
Clustered regularly interspaced short palindromic repeat (CRISPR) has been gaining much attention in the modern medical field and has been widely used for the diagnosis and treatment of diseases in recent years. In this review, we will introduce the application of CRISPR in disease diagnosis and treatment, including its use in detecting pathogens, gene mutations, and genetic diseases, as well as its application in gene therapy for single-gene diseases, cancer, viral infectious diseases, and cardiovascular diseases. Additionally, we will discuss the potential future directions and challenges of CRISPR in the diagnosis and treatment of diseases, and provide a thorough overview of the ways in which CRISPR is used for diagnosing and treating diseases.
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Ishino Y, Shinagawa H, Makino K, Amemura M, Nakata A. J Bacteriol, 1987, 169: 5429–5433
Jansen R, Embden JDA, Gaastra W, Schouls LM. Mol Microbiol, 2002, 43: 1565–1575
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P. Science, 2007, 315: 1709–1712
Wang JY, Doudna JA. Science, 2023, 379: eadd8643
Gasiunas G, Barrangou R, Horvath P, Siksnys V. Proc Natl Acad Sci USA, 2012, 109: E2579–2586
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. Science, 2012, 337: 816–821
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F. Science, 2013, 339: 819–823
Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, Church GM. Science, 2013, 339: 823–826
Rallapalli KL, Komor AC. Annu Rev Biochem, 2023, 92: 43–79
Chen PJ, Liu DR. Nat Rev Genet, 2023, 24: 161–177
Zetsche B, Gootenberg JS, Abudayyeh OO, Slaymaker IM, Makarova KS, Essletzbichler P, Volz SE, Joung J, van der Oost J, Regev A, Koonin EV, Zhang F. Cell, 2015, 163: 759–771
Chen JS, Ma E, Harrington LB, Da Costa M, Tian X, Palefsky JM, Doudna JA. Science, 2018, 360: 436–439
Nguyen LT, Rananaware SR, Yang LG, Macaluso NC, Ocana-Ortiz JE, Meister KS, Pizzano BLM, Sandoval LSW, Hautamaki RC, Fang ZR, Joseph SM, Shoemaker GM, Carman DR, Chang L, Rakestraw NR, Zachary JF, Guerra S, Perez A, Jain PK. Cell Rep Med, 2023, 4: 101037
Fozouni P, Son S, Díaz de León Derby M, Knott GJ, Gray CN, D’Ambrosio MV, Zhao C, Switz NA, Kumar GR, Stephens SI, Boehm D, Tsou CL, Shu J, Bhuiya A, Armstrong M, Harris AR, Chen PY, Osterloh JM, Meyer-Franke A, Joehnk B, Walcott K, Sil A, Langelier C, Pollard KS, Crawford ED, Puschnik AS, Phelps M, Kistler A, DeRisi JL, Doudna JA, Fletcher DA, Ott M. Cell, 2021, 184: 323–333.e9
East-Seletsky A, O’Connell MR, Knight SC, Burstein D, Cate JHD, Tjian R, Doudna JA. Nature, 2016, 538: 270–273
Gootenberg JS, Abudayyeh OO, Lee JW, Essletzbichler P, Dy AJ, Joung J, Verdine V, Donghia N, Daringer NM, Freije CA, Myhrvold C, Bhattacharyya RP, Livny J, Regev A, Koonin EV, Hung DT, Sabeti PC, Collins JJ, Zhang F. Science, 2017, 356: 438–442
Chen WZ, Zhang HY, Zhang YF, Wang Y, Gan JH, Ji QJ. PLoS Biol, 2019, 17: e3000496
Ma E, Chen K, Shi H, Stahl EC, Adler B, Trinidad M, Liu J, Zhou K, Ye J, Doudna JA. Nucleic Acids Res, 2022, 50: 12689–12701
Wu Z, Zhang Y, Yu H, Pan D, Wang Y, Wang Y, Li F, Liu C, Nan H, Chen W, Ji Q. Nat Chem Biol, 2021, 17: 1132–1138
Liu JJ, Orlova N, Oakes BL, Ma E, Spinner HB, Baney KLM, Chuck J, Tan D, Knott GJ, Harrington LB, Al-Shayeb B, Wagner A, Brötzmann J, Staahl BT, Taylor KL, Desmarais J, Nogales E, Doudna JA. Nature, 2019, 566: 218–223
Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. Science, 2020, 369: 333–337
Al-Shayeb B, Skopintsev P, Soczek KM, Stahl EC, Li Z, Groover E, Smock D, Eggers AR, Pausch P, Cress BF, Huang CJ, Staskawicz B, Savage DF, Jacobsen SE, Banfield JF, Doudna JA. Cell, 2022, 185: 4574–4586.e16
Kato K, Zhou W, Okazaki S, Isayama Y, Nishizawa T, Gootenberg JS, Abudayyeh OO, Nishimasu H. Cell, 2022, 185: 2324–2337.e16
Dmytrenko O, Neumann GC, Hallmark T, Keiser DJ, Crowley VM, Vialetto E, Mougiakos I, Wandera KG, Domgaard H, Weber J, Gaudin T, Metcalf J, Gray BN, Begemann MB, Jackson RN, Beisel CL. Nature, 2023, 613: 588–594
Schultzhaus Z, Wang Z, Stenger D. Biotechnol Adv, 2021, 46: 107672
Malekshoar M, Azimi SA, Kaki A, Mousazadeh L, Motaei J, Vatankhah M. J Mol Diagnostics, 2023, 25: 249–262
Lee SH, Yu J, Hwang GH, Kim S, Kim HS, Ye S, Kim K, Park J, Park DY, Cho YK, Kim JS, Bae S. Oncogene, 2017, 36: 6823–6829
Gilpatrick T, Lee I, Graham JE, Raimondeau E, Bowen R, Heron A, Downs B, Sukumar S, Sedlazeck FJ, Timp W. Nat Biotechnol, 2020, 38: 433–438
Aalipour A, Dudley JC, Park S, Murty S, Chabon JJ, Boyle EA, Diehn M, Gambhir SS. Clin Chem, 2018, 64: 307–316
Li L, Shen G, Wu M, Jiang J, Xia Q, Lin P. Trends Biotechnol, 2022, 40: 1326–1345
Kaminski MM, Abudayyeh OO, Gootenberg JS, Zhang F, Collins JJ. Nat Biomed Eng, 2021, 5: 643–656
Cao G, Chen X, Deng Y, Nie F, Liu Y, Wang G, Huo D, Hou C. Anal Chim Acta, 2021, 1182: 338943
Lee Yu H, Cao Y, Lu X, Hsing IM. Biosens Bioelectron, 2021, 189: 113382
Chen Y, Mei Y, Jiang X. Chem Sci, 2021, 12: 4455–4462
Broughton JP, Deng X, Yu G, Fasching CL, Servellita V, Singh J, Miao X, Streithorst JA, Granados A, Sotomayor-Gonzalez A, Zorn K, Gopez A, Hsu E, Gu W, Miller S, Pan CY, Guevara H, Wadford DA, Chen JS, Chiu CY. Nat Biotechnol, 2020, 38: 870–874
Welch NL, Zhu M, Hua C, Weller J, Mirhashemi ME, Nguyen TG, Mantena S, Bauer MR, Shaw BM, Ackerman CM, Thakku SG, Tse MW, Kehe J, Uwera MM, Eversley JS, Bielwaski DA, McGrath G, Braidt J, Johnson J, Cerrato F, Moreno GK, Krasilnikova LA, Petros BA, Gionet GL, King E, Huard RC, Jalbert SK, Cleary ML, Fitzgerald NA, Gabriel SB, Gallagher GR, Smole SC, Madoff LC, Brown CM, Keller MW, Wilson MM, Kirby MK, Barnes JR, Park DJ, Siddle KJ, Happi CT, Hung DT, Springer M, MacInnis BL, Lemieux JE, Rosenberg E, Branda JA, Blainey PC, Sabeti PC, Myhrvold C. Nat Med, 2022, 28: 1083–1094
Weng Z, You Z, Yang J, Mohammad N, Lin M, Wei Q, Gao X, Zhang Y. Angew Chem Int Ed, 2023, 62: e202214987
Joung J, Ladha A, Saito M, Kim NG, Woolley AE, Segel M, Barretto RPJ, Ranu A, Macrae RK, Faure G, Ioannidi EI, Krajeski RN, Bruneau R, Huang MLW, Yu XG, Li JZ, Walker BD, Hung DT, Greninger AL, Jerome KR, Gootenberg JS, Abudayyeh OO, Zhang F. N Engl J Med, 2020, 383: 1492–1494
Wu L, Wang X, Wu C, Cao X, Tang T, Huang H, Huang X. Anal Chim Acta, 2022, 1221: 340120
Zhang X, Shi Y, Chen G, Wu D, Wu Y, Li G. Small Methods, 2022, 6: e2200794
Xie Y, Li H, Chen F, Udayakumar S, Arora K, Chen H, Lan Y, Hu Q, Zhou X, Guo X, Xiu L, Yin K. Adv Sci, 2022, 9: e2204172
Freije CA, Myhrvold C, Boehm CK, Lin AE, Welch NL, Carter A, Metsky HC, Luo CY, Abudayyeh OO, Gootenberg JS, Yozwiak NL, Zhang F, Sabeti PC. Mol Cell, 2019, 76: 826–837.e11
Hang XM, Liu PF, Tian S, Wang HY, Zhao KR, Wang L. Biosens Bioelectron, 2022, 211: 114393
Jiao J, Yang M, Zhang T, Zhang Y, Yang M, Li M, Liu C, Song S, Bai T, Song C, Wang M, Pang H, Feng J, Zheng X. J Hazard Mater, 2022, 426: 128038
Bruch R, Baaske J, Chatelle C, Meirich M, Madlener S, Weber W, Dincer C, Urban GA. Adv Mater, 2019, 31: 1905311
Tian T, Shu B, Jiang Y, Ye M, Liu L, Guo Z, Han Z, Wang Z, Zhou X. ACS Nano, 2021, 15: 1167–1178
Broto M, Kaminski MM, Adrianus C, Kim N, Greensmith R, Dissanayake-Perera S, Schubert AJ, Tan X, Kim H, Dighe AS, Collins JJ, Stevens MM. Nat Nanotechnol, 2022, 17: 1120–1126
Yan H, Wen Y, Tian Z, Hart N, Han S, Hughes SJ, Zeng Y. Nat Biomed Eng, 2023, doi: https://doi.org/10.1038/s41551-023-01033-1
Dai Y, Somoza RA, Wang L, Welter JF, Li Y, Caplan AI, Liu CC. Angew Chem Int Ed, 2019, 58: 17399–17405
Liu H, Wang L, Luo Y. Synth Syst Biotechnol, 2018, 3: 217–228
Zhang X, Wang L, Liu M, Li D. Sci China Life Sci, 2017, 60: 468–475
Wu SS, Li QC, Yin CQ, Xue W, Song CQ. Theranostics, 2020, 10: 4374–4382
McCullough KT, Boye SL, Fajardo D, Calabro K, Peterson JJ, Strang CE, Chakraborty D, Gloskowski S, Haskett S, Samuelsson S, Jiang H, Witherspoon CD, Gamlin PD, Maeder ML, Boye SE. Hum Gene Ther, 2019, 30: 571–589
Maeder ML, Stefanidakis M, Wilson CJ, Baral R, Barrera LA, Bounoutas GS, Bumcrot D, Chao H, Ciulla DM, DaSilva JA, Dass A, Dhanapal V, Fennell TJ, Friedland AE, Giannoukos G, Gloskowski SW, Glucksmann A, Gotta GM, Jayaram H, Haskett SJ, Hopkins B, Horng JE, Joshi S, Marco E, Mepani R, Reyon D, Ta T, Tabbaa DG, Samuelsson SJ, Shen S, Skor MN, Stetkiewicz P, Wang T, Yudkoff C, Myer VE, Albright CF, Jiang H. Nat Med, 2019, 25: 229–233
Gee P, Lung MSY, Okuzaki Y, Sasakawa N, Iguchi T, Makita Y, Hozumi H, Miura Y, Yang LF, Iwasaki M, Wang XH, Waller MA, Shirai N, Abe YO, Fujita Y, Watanabe K, Kagita A, Iwabuchi KA, Yasuda M, Xu H, Noda T, Komano J, Sakurai H, Inukai N, Hotta A. Nat Commun, 2020, 11: 1334
Petkova MV, Stantzou A, Morin A, Petrova O, Morales-Gonzalez S, Seifert F, Bellec-Dyevre J, Manoliu T, Goyenvalle A, Garcia L, Richard I, Laplace-Builhé C, Schuelke M, Amthor H. Neuropathol Appl Neurobiol, 2020, 46: 602–614
Ruan J, Hirai H, Yang D, Ma L, Hou X, Jiang H, Wei H, Rajagopalan C, Mou H, Wang G, Zhang J, Li K, Chen YE, Sun F, Xu J. Mol Ther Nucleic Acids, 2019, 16: 73–81
Telen MJ, Malik P, Vercellotti GM. Nat Rev Drug Discov, 2019, 18: 139–158
Xu S, Luk K, Yao Q, Shen AH, Zeng J, Wu Y, Luo HY, Brendel C, Pinello L, Chui DHK, Wolfe SA, Bauer DE. Blood, 2019, 133: 2255–2262
Wu Y, Zeng J, Roscoe BP, Liu P, Yao Q, Lazzarotto CR, Clement K, Cole MA, Luk K, Baricordi C, Shen AH, Ren C, Esrick EB, Manis JP, Dorfman DM, Williams DA, Biffi A, Brugnara C, Biasco L, Brendel C, Pinello L, Tsai SQ, Wolfe SA, Bauer DE. Nat Med, 2019, 25: 776–783
Kim K, Park SW, Kim JH, Lee SH, Kim D, Koo T, Kim K, Kim JH, Kim JS. Genome Res, 2017, 27: 419–426
Chung SH, Mollhoff IN, Nguyen U, Nguyen A, Stucka N, Tieu E, Manna S, Meleppat RK, Zhang P, Nguyen EL, Fong J, Zawadzki R, Yiu G. Mol Ther-Methods Clin Dev, 2020, 17: 409–417
Huang CH, Lee KC, Doudna JA. Trends Cancer, 2018, 4: 499–512
Guo X, Jiang H, Shi B, Zhou M, Zhang H, Shi Z, Du G, Luo H, Wu X, Wang Y, Sun R, Li Z. Front Pharmacol, 2018, 9: 1118
Zhang W, Shi L, Zhao Z, Du P, Ye X, Li D, Cai Z, Han J, Cai J. Cancer Chemother Pharmacol, 2019, 83: 911–920
Chavez M, Chen X, Finn PB, Qi LS. Nat Rev Nephrol, 2023, 19: 9–22
Liu S, Wang QK, Yu X, Li YL, Guo YD, Liu ZP, Sun FY, Hou W, Li CM, Wu L, Guo DY, Chen SL. Sci Rep, 2018, 8: 1–11
Yang YC, Chen YH, Kao JH, Ching C, Liu IJ, Wang CC, Tsai CH, Wu FY, Liu CJ, Chen PJ, Chen DS, Yang HC. Mol Ther Nucleic Acids, 2020, 20: 480–490
Zhen S, Qiang R, Lu J, Tuo X, Yang X, Li X. J Med Virol, 2023, 95: e28144
Yin D, Ling S, Wang D, Dai Y, Jiang H, Zhou X, Paludan SR, Hong J, Cai Y. Nat Biotechnol, 2021, 39: 567–577
Li ZH, Wang J, Xu JP, Wang J, Yang X. Military Med Res, 2023, 10: 12
Xie BC, Shi XC, Li Y, Xia B, Zhou J, Du MJ, Xing XY, Bai L, Liu EQ, Alvarez F, Jin L, Deng SP, Mitchell GA, Pan DK, Li MZ, Wu JW. PLoS Genet, 2021, 17: e1009891
Musunuru K, Chadwick AC, Mizoguchi T, Garcia SP, DeNizio JE, Reiss CW, Wang K, Iyer S, Dutta C, Clendaniel V, Amaonye M, Beach A, Berth K, Biswas S, Braun MC, Chen HM, Colace TV, Ganey JD, Gangopadhyay SA, Garrity R, Kasiewicz LN, Lavoie J, Madsen JA, Matsumoto Y, Mazzola AM, Nasrullah YS, Nneji J, Ren H, Sanjeev A, Shay M, Stahley MR, Fan SHY, Tam YK, Gaudelli NM, Ciaramella G, Stolz LE, Malyala P, Cheng CJ, Rajeev KG, Rohde E, Bellinger AM, Kathiresan S. Nature, 2021, 593: 429–434
Doudna JA. Nature, 2020, 578: 229–236
Jeong SH, Kim HB, Kim MC, Lee J, Lee JH, Kim JH, Kim JW, Park WY, Kim SY, Kim JB, Kim H, Kim JM, Choi HS, Lim DS. J Clin Invest, 2018, 128: 1010–1025
Wei T, Cheng Q, Min YL, Olson EN, Siegwart DJ. Nat Commun, 2020, 11: 3232
Ryu SM, Koo T, Kim K, Lim K, Baek G, Kim ST, Kim HS, Kim D, Lee H, Chung E, Kim JS. Nat Biotechnol, 2018, 36: 536–539
Li C, Georgakopoulou A, Newby GA, Chen PJ, Everette KA, Paschoudi K, Vlachaki E, Gil S, Anderson AK, Koob T, Huang L, Wang H, Kiem HP, Liu DR, Yannaki E, Lieber A. Blood, 2023, 141: 2085–2099
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This work was supported by the National Natural Science Foundation of China (21907077, 92153303, 21721005, 91940000) and Fundamental Research Funds for the Central Universities (2042023kf0118).
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Wang, Z., Liu, Y., Zhou, F. et al. The application of CRISPR-Cas in disease diagnosis and treatment. Sci. China Chem. 66, 2734–2742 (2023). https://doi.org/10.1007/s11426-023-1765-0
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DOI: https://doi.org/10.1007/s11426-023-1765-0