Abstract
Amphibians defend against pathogens using skin microbial communities, in addition to innate and adaptive immunity. Despite skin microbial communities play a key role in the immune function of amphibians, few studies have focused on the changes in its composition and function. In the present study, we identified the variation in adaptive immunity, as well as the corresponding changes in skin microbiome of Bufo raddei living in a heavy metal polluted area. The adaptive immunity of B. raddei in heavy metal polluted area was significantly lower than that in relatively unpolluted area. Further, different skin bacterial communities were found in the two areas. In the heavy metal polluted area, Actinobacteria and Microbacterium were the dominant bacteria in the skin microbiome of B. raddei, which showed broad-spectrum antibacterial activity. Besides, the antibiotic synthesis was also increased in metabolic pathways. The present study suggested that the adaptive immunity of B. raddei was weakened under long-term heavy metal stress. However, the toads increased the abundance of bacteriostatic bacteria by regulating the composition of skin microbiome, which released a large number of bacteriostatic metabolites and enhanced the host resistance to external pathogens in turn.
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The datasets used or analyzed during the current study are available from the corresponding author on reasonable request.
References
Abdelmohsen U, Yang C, Horn H, Hajjar D, Ravasi T, Hentschel U (2014) Actinomycetes from red sea sponges: sources for chemical and phylogenetic diversity. Mar Drugs 12:2771–2789. https://doi.org/10.3390/md12052771
Alibardi L (2006) Structural and immunocytochemical characterization of keratinization in vertebrate epidermis and epidermal derivatives. Int Rev Cytol 253:177–259. https://doi.org/10.1016/S0074-7696(06)53005-0
Banday UZ, Swaleh SB, Usmani N (2019) Insights into the heavy metal-induced immunotoxic and genotoxic alterations as health indicators of Clarias gariepinus inhabiting a rivulet. Ecotoxicol Environ Saf 183:109584. https://doi.org/10.1016/j.ecoenv.2019.109584
Bates KA, Clare FC, O’Hanlon S, Bosch J, Brookes L, Hopkins K, McLaughlin EJ, Danie O, Garner TWJ, Fisher MC, Harrison XA (2018) Amphibian chytridiomycosis outbreak dynamics are linked with host skin bacterial community structure. Nat Commun 9:693. https://doi.org/10.1038/s41467-018-02967-w
Bletz MC, Myers J, Woodhams DC, Rabemananjara FCE, Rakotonirina A, Weldon C, Edmonds D, Vences M, Harris RN (2017) Estimating herd immunity to amphibian chytridiomycosis in Madagascar based on the defensive function of amphibian skin bacteria. Front Microbiol 8:1751. https://doi.org/10.3389/fmicb.2017.01751
Brannelly LA, Webb R, Skerratt LF, Berger L (2016) Amphibians with infectious disease increase their reproductive effort: evidence for the terminal investment hypothesis. Open Biol 6:150251. https://doi.org/10.1098/rsob.150251
Bray JR, Curtis JT (1957) An ordination of the upland forest communities of southern Wisconsin. Ecol Monogr 27:325–349. https://doi.org/10.2307/1942268
Brown GP, Shilton CM, Shine R (2011) Measuring amphibian immunocompetence: validation of the phytohemagglutinin skin-swelling assay in the cane toad, Rhinella marina. Methods Ecol Evol 2:341–348. https://doi.org/10.1111/j.2041-210X.2011.00090.x
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336. https://doi.org/10.1038/nmeth.f.303
Chen YE, Tsao H (2013) The skin microbiome: current perspectives and future challenges. J Am Acad Dermatol 69:143-155.e3. https://doi.org/10.1016/j.jaad.2013.01.016
Chinchar VG, Bryan L, Silphadaung U, Noga E, Wade D, Rollins-Smith L (2004) Inactivation of viruses infecting ectothermic animals by amphibian and piscine antimicrobial peptides. Virology 323:268–275. https://doi.org/10.1016/j.virol.2004.02.029
Clutton-Brock TH (1984) Reproductive effort and terminal investment in iteroparous animals. Am Nat 123:212–229. https://doi.org/10.1086/284198
Costa S, Lopes I, Proença DN, Ribeiro R, Morais PV (2016) Diversity of cutaneous microbiome of Pelophylax perezi populations inhabiting different environments. Sci Total Environ 572:995–1004. https://doi.org/10.1016/j.scitotenv.2016.07.230
Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R (2009) Bacterial community variation in human body habitats across space and time. Science 326:1694–1697. https://doi.org/10.1126/science.1177486
Culp CE, Falkinham JO, Belden LK (2007) Identification of the natural bacterial microflora on the skin of eastern newts, bullfrog tadpoles and redback salamanders. Herpetologica 63:66–71. https://doi.org/10.1655/0018-0831(2007)63[66:IOTNBM]2.0.CO;2
de Souza DJ, Lenoir A, Kasuya MCM, Ribeiro MMR, Devers S, Covceiro JDC, Della Lucia TMCD (2013) Ectosymbionts and immunity in the leaf-cutting ant Acromyrmex subterraneus subterraneus. Brain Behav Immun 28:182–187. https://doi.org/10.1016/j.bbi.2012.11.014
Demas GE, Nelson RJ (2012) Ecoimmunology. Oxford University Press, New York
Densmore CL, Green DE (2007) Diseases of amphibians. ILAR J 48:235–254. https://doi.org/10.1093/ilar.48.3.235
Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI (2020) PICRUSt2 for prediction of metagenome functions. Nat Biotechnol 38:685–688. https://doi.org/10.1038/s41587-020-0548-6
French SS, DeNardo DF, Greives TJ, Strand CR, Demas GE (2010) Human disturbance alters endocrine and immune responses in the Galapagos marine iguana (Amblyrhynchus cristatus). Horm Behav 58:792–799. https://doi.org/10.1016/j.yhbeh.2010.08.001
Goodfellow M, Williams ST (1983) Ecology of actinomycetes. Annu Rev Microbiol 37:189–216. https://doi.org/10.1146/annurev.mi.37.100183.001201
Grice EA, Segre JA (2011) The skin microbiome. Nat Rev Microbiol 9:244–253. https://doi.org/10.1038/nrmicro2537
Guo R, Zhang W, Yang Y, Ding J, Yang W, Zhang Y (2018) Variation of fitness and reproductive strategy in male Bufo raddei under environmental heavy metal pollution. Ecotoxicol Environ Saf 164:253–260. https://doi.org/10.1016/j.ecoenv.2018.08.035
Hadji-Azimi I, Coosemans V, Canicatti C (1987) Atlas of adult Xenopus laevis laevis hematology. Dev Comp Immunol 11:807–874. https://doi.org/10.1016/0145-305X(87)90068-1
Haeder S, Wirth R, Herz H, Spiteller D (2009) Candicidin-producing Streptomyces support leaf-cutting ants to protect their fungus garden against the pathogenic fungus Escovopsis. Proc Natl Acad Sci USA 106:4742–4746. https://doi.org/10.1073/pnas.0812082106
Haire R, Kitzan Haindfield M, Turpen J, Litman G (2002) Structure and diversity of T-lymphocyte antigen receptors alpha and gamma in Xenopus. Immunogenetics 54:431–438. https://doi.org/10.1007/s00251-002-0474-4
Harris RN, Brucker RM, Walke JB, Becker MH, Schwantes CR, Flaherty DC, Lam BA, Woodhams DC, Briggs CJ, Vredenburg VT, Minbiole KP (2009) Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus. ISME J 3:818–824. https://doi.org/10.1038/ismej.2009.27
Haslam IS, Roubos EW, Mangoni ML, Yoshizato K, Vaudry H, Kloepper JE, Pattwell DM, Maderson PF, Paus R (2014) From frog integument to human skin: dermatological perspectives from frog skin biology. Biol Rev 89:618–655. https://doi.org/10.1111/brv.12072
Hemelaar A (1985) An improved method to estimate the number of year rings resorbed in phalanges of Bufo bufo (L.) and its application to populations from different latitudes and altitudes. Amphib-Reptilia 6:323–341
Holden WM, Hanlon SM, Woodhams DC, Chappell TM, Wells HM, Glisson SM, McKenzie VJ, Knight R, Parris MJ, Rollins-Smith LA (2015) Skin bacteria provide early protection for newly metamorphosed southern leopard frogs (Rana sphenocephala) against the frog-killing fungus, Batrachochytrium dendrobatidis. Biol Cons 187:91–102. https://doi.org/10.1016/j.biocon.2015.04.007
Horton TL, Minter R, Stewart R, Ritchie P, Watson MD, Horton JD (2000) Xenopus NK cells identified by novel monoclonal antibodies. Eur J Immunol 30:604–613. https://doi.org/10.1002/15214141(200002)30:2%3c604::AIDIMMU604%3e3.0.CO;2-X
Hughey MC, Pena JA, Reyes R, Medina D, Belden LK, Burrowes PA (2017) Skin bacterial microbiome of a generalist Puerto Rican frog varies along elevation and land use gradients. PeerJ 5:e3688. https://doi.org/10.7717/peerj.3688
Jani AJ, Briggs CJ (2014) The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection. Proc Natl Acad Sci USA 111:E5049–E5058. https://doi.org/10.1073/pnas.1412752111
Jani AJ, Briggs CJ (2018) Host and aquatic environment shape the amphibian skin microbiome but effects on downstream resistance to the pathogen Batrachochytrium dendrobatidis are variable. Front Microbiol 9:487. https://doi.org/10.3389/fmicb.2018.00487
Koller LD (1980) Immunotoxicology of heavy metals. Int J Immunopharmacol 2:269–279. https://doi.org/10.1016/0192-0561(80)90027-2
Kueneman JG, Parfrey LW, Woodhams DC, Archer HM, Knight R, Mckenzie VJ (2014) The amphibian skin-associated microbiome across species, space and life history stages. Mol Ecol 23:1238–1250. https://doi.org/10.1111/mec.12510
Larsen EH, Ramløv H (2013) Role of cutaneous surface fluid in frog osmoregulation. Comp Biochem Physiol a: Mol Integr Physiol 165:365–370. https://doi.org/10.1016/j.cbpa.2013.04.005
Lauer A, Simon MA, Banning JL, Lam BA, Harris RN (2008) Diversity of cutaneous bacteria with antifungal activity isolated from female four-toed salamanders. ISME J 2:145–157. https://doi.org/10.1038/ismej.2007.110
Loudon AH, Woodhams DC, Parfrey LW, Archer H, Knight R, McKenzie V, Harris RN (2014) Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus). ISME J 8:830–840. https://doi.org/10.1038/ismej.2013.200
Magurran AE (1988) The empirical value of diversity measures. Ecological Diversity and Its Measurement. Springer, Netherlands, Dordrecht, pp 101–114
Marcugini S, Milani A, Pambianco F (2002) NMDS codes of maximal length over Fq, 8≤q≤11. IEEE Trans Inform Theory 48:963–966. https://doi.org/10.1109/18.992802
Martin LB II, Gilliam J, Han P, Lee K, Wikelski M (2005) Corticosterone suppresses cutaneous immune function in temperate but not tropical House Sparrows, Passer domesticus. Gen Comp Endocrinol 140:126–135. https://doi.org/10.1016/j.ygcen.2004.10.010
Martin LB II, Han P, Lewittes J, Kuhlman JR, Klasing KC, Wikelski M (2006) Phytohemagglutinin-induced skin swelling in birds: histological support for a classic immunoecological technique. Funct Ecology 20:290–299. https://doi.org/10.1111/j.1365-2435.2006.01094.x
McKenzie VJ, Bowers RM, Fierer N, Knight R, Lauber CL (2012) Co-habiting amphibian species harbor unique skin bacterial communities in wild populations. ISME J 6:588–596. https://doi.org/10.1038/ismej.2011.129
Mescher AL, Wolf WL, Ashley Moseman E, Hartman B, Hartman C, Nguyen E, Neff AW (2007) Cells of cutaneous immunity in Xenopus: studies during larval development and limb regeneration. Dev Comp Immunol 31:383–393. https://doi.org/10.1016/j.dci.2006.07.001
Mommsen TP, Vijayan MM, Moon TW (1999) Cortisol in teleosts: dynamics, mechanisms of action, and metabolic regulation. Rev Fish Biol Fisheries 9:211–268. https://doi.org/10.1023/A:1008924418720
Muletz CR, Myers JM, Domangue RJ, Myers JM, Domangue RJ, Herrick JB, Harris RN (2012) Soil bioaugmentation with amphibian cutaneous bacteria protects amphibian hosts from infection by Batrachochytrium dendrobatidis. Biol Cons 152:119–126. https://doi.org/10.1016/j.biocon.2012.03.022
Newton AH, Cardani A, Braciale TJ (2016) The host immune response in respiratory virus infection: balancing virus clearance and immunopathology. Semin Immunopathol 38:471–482. https://doi.org/10.1007/s00281-016-0558-0
Pianka ER, Parker WS (1975) Age-specific reproductive tactics. Am Nat 109:453–464. https://doi.org/10.1086/283013
Priyadarshani S, Madhushani WAN, Jayawardena UA, Wickramasinghe DD, Udagama PV (2015) Heavy metal mediated immunomodulation of the Indian green frog, Euphlyctis hexadactylus (Anura:Ranidae) in urban wetlands. Ecotoxicol Environ Saf 116:40–49. https://doi.org/10.1016/j.ecoenv.2015.02.037
Rai PK (2009) Heavy metals in water, sediments and wetland plants in an aquatic ecosystem of tropical industrial region, India. Environ Monit Assess 158:433–457. https://doi.org/10.1007/s10661-008-0595-9
Rebollar EA, Simonetti SJ, Shoemaker WR, Harris RN (2016) Direct and indirect horizontal transmission of the antifungal probiotic bacterium Janthinobacterium lividum on green frog (Lithobates clamitans) tadpoles. Appl Environ Microbiol 82:2457–2466. https://doi.org/10.1128/AEM.04147-15
Robert J, Ohta Y (2009) Comparative and developmental study of the immune system in Xenopus. Dev Dyn 238:1249–1270. https://doi.org/10.1002/dvdy.21891
Robert J, McGuire CC, Nagel S, Lawrence BP, Andino FDJ (2019) Developmental exposure to chemicals associated with unconventional oil and gas extraction alters immune homeostasis and viral immunity of the amphibian Xenopus. Sci Total Environ 671:644–654. https://doi.org/10.1016/j.scitotenv.2019.03.395
Rollins-Smith LA (2001) Neuroendocrine-immune system interactions in amphibians: implications for understanding global amphibian declines. IR 23:273–280. https://doi.org/10.1385/IR:23:2-3:273
Rollins-Smith LA (2009) The role of amphibian antimicrobial peptides in protection of amphibians from pathogens linked to global amphibian declines. Biochem Biophys Acta 1788:1593–1599. https://doi.org/10.1016/j.bbamem.2009.03.008
Rollins-Smith LA, Barker KS, Davis AT (1997) Involvement of glucocorticoids in the reorganization of the amphibian immune system at metamorphosis. Dev Immunol 5:145–152
Rosenberg CE, Fink NE, Arrieta MA, Salibián A (2003) Effect of lead acetate on the in vitro engulfment and killing capability of toad (Bufo arenarum) neutrophils. Toxicol Pharmacol 136:225–233. https://doi.org/10.1016/j.cca.2003.09.004
Rosenthal M, Goldberg D, Aiello A, Larson E, Foxman B (2011) Skin microbiota: microbial community structure and its potential association with health and disease. Infect Genet Evol 11:839–848. https://doi.org/10.1016/j.meegid.2011.03.022
Schoenian I, Spiteller M, Ghaste M, Wirth R, Herz H, Spiteller D (2011) Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants. Proc Natl Acad Sci USA 108:1955–1960. https://doi.org/10.1073/pnas.1008441108
Schwager J, Bürckert N, Schwager M, Wilson M (1991) Evolution of immunoglobulin light chain genes: analysis of Xenopus IgL isotypes and their contribution to antibody diversity. EMBO J 10:505–511. https://doi.org/10.1002/j.1460-2075.1991.tb07976.x
Stearns SC (1976) Life-history tactics: a review of the ideas. Q Rev Biol 51:3–47. https://doi.org/10.1086/409052
Toledo RC, Jared C (1995) Cutaneous granular glands and amphibian venoms. Physiology 111:1–29. https://doi.org/10.1016/0300-9629(95)98515-I
Varga JFA, Bui-Marinos MP, Katzenback BA (2019) Frog skin innate immune defences: sensing and surviving pathogens. Front Immunol 9:3128. https://doi.org/10.3389/fimmu.2018.03128
Wang Z, Song Y (2022) Toward understanding the genetic bases underlying plant-mediated “cry for help” to the microbiota. iMeta 1:e8. https://doi.org/10.1002/imt2.8
Weerathunga WAMT, Rajapaksa G (2020) The impact of elevated temperature and CO2 on growth, physiological and immune responses of Polypedates cruciger (common hourglass tree frog). Front Zool 17:3. https://doi.org/10.1186/s12983-019-0348-3
Williams GC (1966) Natural selection, the costs of reproduction, and a refinement of lack’s principle. Am Nat 100:687–690. https://doi.org/10.1086/282461
Yokoyama H, Kudo N, Todate M, Shimada Y, Suzuki M, Tamura K (2018) Skin regeneration of amphibians: a novel model for skin regeneration as adults. Develop Growth Differ 60:316–325. https://doi.org/10.1111/dgd.12544
Zhang W, Guo R, Ai S, Yang Y, Ding J, Zhang Y (2018) Long-term heavy metal pollution varied female reproduction investment in free-living anura, Bufo raddei. Ecotoxicol Environ Saf 159:136–142. https://doi.org/10.1016/j.ecoenv.2018.05.001
Zhang W, Sun H, Su R, Wang S (2022) Fat rather than health – ecotoxic responses of Bufo raddei to environmental heavy metal stress during the non-breeding season. Ecotoxicol Environ Saf 244:114040. https://doi.org/10.1016/j.ecoenv.2022.114040
Zhelev ZM, Arnaudova DN, Popgeorgiev GS, Tsonev SV (2020) In situ assessment of health status and heavy metal bioaccumulation of adult Pelophylax ridibundus (Anura: Ranidae) individuals inhabiting polluted area in southern Bulgaria. Ecol Ind 115:106413. https://doi.org/10.1016/j.ecolind.2020.106413
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The authors are very grateful for the anonymous reviewers and Editors in providing comments about the wording and organization of our manuscript. We also want to thank Editorbar (www.editorbar.com) for English language editing.
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This work was supported by the National Natural Science Foundation of China (No: 31971516), and Foundation for Distinguished Young Talent of Gansu province (No: 20JR10RA647).
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Rui Su: methodology, investigation, resources, writing—original draft, writing—review and editing. Sheng Zhang: methodology, investigation, resources. Xueying Zhang: resources. Shengnan Wang: investigation, resources. Wenya Zhang: methodology, investigation, resources, supervision, conceptualization, writing—review and editing, funding acquisition, formal analysis.
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Su, R., Zhang, S., Zhang, X. et al. Neglected skin-associated microbial communities: a unique immune defense strategy of Bufo raddei under environmental heavy metal pollution. Environ Sci Pollut Res 30, 22330–22342 (2023). https://doi.org/10.1007/s11356-022-23803-1
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DOI: https://doi.org/10.1007/s11356-022-23803-1