Skip to main content
Log in

Evaluation of aromatic hydrocarbon decomposition catalyzed by the dioxygenase system and substitution of ferredoxin and ferredoxin reductase

  • Appropriate Technologies to Combat Water Pollution
  • Published:
Environmental Science and Pollution Research Aims and scope Submit manuscript

Abstract

In this study, the catalytic activity and kinetic characteristics of the aromatic hydrocarbon dioxygenase system and the possibility of substituting its ferredoxin and ferredoxin reductase components were evaluated. The genes encoding toluene dioxygenase and toluene dihydrodiol dehydrogenase were cloned from Pseudomonas putida F1, and the corresponding enzymes were overexpressed and purified to homogeneity. Oxidative hydroxylation of toluene to cis-toluene dihydrodiol was catalyzed by toluene dioxygenase, and its subsequent dehydrogenation to 3-methylcatechol was catalyzed by toluene dihydrodiol dehydrogenase. The specific activity of the dioxygenase was 2.82 U/mg-protein, which is highly remarkable compared with the values obtained in previous researches conducted with crude extracts or insoluble forms of enzymes. Kinetic parameters, as characterized by the Hill equation, were vmax = 497.2 μM/min, KM = 542.4 μM, and nH = 2.2, suggesting that toluene dioxygenase has at least three cooperative binding sites for toluene. In addition, the use of alternative ferredoxins and reductases was examined. Ferredoxin cloned from CYP153 could transfer electrons to the iron sulfur protein component of toluene dioxygenase. The ferredoxin could be reduced by ferredoxin, rubredoxin, and putidaredoxin reductases of CYP153, alkane-1 monooxygenase, and camphor 5-monooxygenase, respectively. The results provide useful information regarding the effective enzymatic biotreatment of hazardous aromatic hydrocarbon contaminants.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Agency for Toxic Substances and Disease Registry (ATSDR) (2017) Toxicological profile for toluene. U.S. Department of Health and Human Services. Public Health Service, Atlanta

    Google Scholar 

  • Ahuja SK, Ferreira GM, Moreira AR (2004) Utilization of enzymes for environmental applications. Crit Rev Biotechnol 24:125–154

    CAS  Google Scholar 

  • Aliverti A, Pandini V, Pennati A, Rosa M, Zanetti G (2008) Structural and functional diversity of ferredoxin-NADP+ reductases. Arch Biochem Biophys 474:283–291

    CAS  Google Scholar 

  • Atkins WM (2005) Non-Michaelis-Menten kinetics in cytochrome P450-catalyzed reactions. Annu Rev Pharmacol Toxicol 45:291–310

    CAS  Google Scholar 

  • Bagnéris C, Cammack R, Mason JR (2005) Subtle difference between benzene and toluene dioxygenases of Pseudomonas putida. Appl Environ Microbiol 71:1570–1580

    Google Scholar 

  • Cho SY, Kwean OS, Yang JW, Cho W, Kwak S, Park S, Lim Y, Kim HS (2017) Identification of the upstream 4-chlorophenol biodegradation pathway using a recombinant monooxygenase from Arthrobacter chlorophenolicus A6. Bioresour Technol 245:1800–1807

    CAS  Google Scholar 

  • Eggink G, Engel H, Meijer WG, Otten J, Kingma J, Witholt B (1988) Alkane utilization in Pseudomonas oleovorans. Structure and function of the regulatory locus alkR. J Biol Chem 263:13400–13405

    CAS  Google Scholar 

  • Farhadian M, Vachelard C, Duchez D, Larroche C (2008) In situ bioremediation of monoaromatic pollutants in groundwater: a review. Bioresour Technol 99:5296–5308

    CAS  Google Scholar 

  • Finette BA, Subramanian V, Gibson DT (1984) Isolation and characterization of Pseudomonas putida PpF1 mutants defective in the toluene dioxygenase enzyme system. J Bacteriol 160:1003–1009

    CAS  Google Scholar 

  • Friemann R, Lee K, Brown EN, Gibson DT, Eklund H, Ramaswamy S (2009) Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system. Acta Crystallogr D Biol Crystallogr 65:24–33

    CAS  Google Scholar 

  • Guzik U, Hupert-Kocurek K, Marchlewicz A, Wojcieszynska D (2014) Enhancement of biodegradation potential of catechol 1, 2-dioxygenase through its immobilization in calcium alginate gel. Electron J Biotechnol 17:83–88

    Google Scholar 

  • Harpel MR, Lipscomb JD (1990) Gentisate 1,2-dioxygenase from pseudomonas. Purification, characterization, and comparison of the enzymes from Pseudomonas testosteroni and Pseudomonas acidovorans. Biol Chem 265:6301–6311

    CAS  Google Scholar 

  • Heald SC, Jenkins RO (1996) Expression and substrate specificity of the toluene dioxygenase of Pseudomonas putida NCIMB 11767. Appl Microbiol Biotechnol 45:56–62

    CAS  Google Scholar 

  • Houston JB, Kenworthy KE (2000) In vitro-in vivo scaling of CYP kinetic data not consistent with the classical Michaelis-Menten model. Drug Metab Dispos 28:246–254

    CAS  Google Scholar 

  • Jiang H, Parales RE, Gibson DT (1999) The α subunit of toluene dioxygenase from Pseudomonas putida F1 can accept electrons from reduced FerredoxinTOL but is catalytically inactive in the absence of the β subunit. Appl Environ Microbiol 65:315–318

    CAS  Google Scholar 

  • Junca H, Plumeier I, Hecht HJ, Pieper DH (2004) Difference in kinetic behaviour of catechol 2,3-dioxygenase variants from a polluted environment. Microbiology 150:4181–4187

    CAS  Google Scholar 

  • Kang CS, Yang JW, Cho W, Kwak S, Park S, Lim Y, Choe JW, Kim HS (2017) Oxidative biodegradation of 4-chlorophenol by using recombinant monooxygenase cloned and overexpressed from Arthrobacter chlorophenolicus A6. Bioresour Technol 240:123–129

    CAS  Google Scholar 

  • Kim D, Kim YS, Kim SK, Kim SW, Zylstra GJ, Kim YM, Kim E (2002) Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17. Appl Environ Microbiol 68:3270–3278

    CAS  Google Scholar 

  • Kim HJ, Suma Y, Lee SH, Kim JA, Kim HS (2012) Immobilization of horseradish peroxidase onto clay minerals using soil organic matter for phenol removal. J Mol Catal B Enzym 83:8–15

    CAS  Google Scholar 

  • Khodaei K, Nassery HR, Asadi MM, Mohammadzadeh H, Mahmoodlu MG (2017) BTEX biodegradation in contaminated groundwater using a novel strain (Pseudomonas sp. BTEX-30). Int Biodeterior Biodegrad 116:234–242

    CAS  Google Scholar 

  • Kok M, Oldenhuis R, van der Linden MP, Meulenberg CH, Kingma J, Witholt B (1989) The Pseudomonas oleovorans alkBAC operon encodes two structurally related rubredoxins and an aldehyde dehydrogenase. J Biol Chem 264:5442–5451

    CAS  Google Scholar 

  • Lee SH, Lim J, Kim HS (2012) Decomposition of chlorinated hydrocarbons using the biocatalyst immobilized by clay minerals. Adv Mater Res 356:1089–1092

    Google Scholar 

  • Lee SH, Lee SH, Ryu SJ, Kang CS, Suma Y, Kim HS (2013) Effective biochemical decomposition of chlorinated aromatic hydrocarbons with a biocatalyst immobilized on a natural enzyme support. Bioresour Technol 141:89–96

    CAS  Google Scholar 

  • Maier T, Förster HH, Asperger O, Hahn U (2001) Molecular characterization of the 56-kDa CYP153 from Acinetobacter sp. EB104. Biochem Biophys Res Commun 286:652–658

    CAS  Google Scholar 

  • Newman LM, Wackett LP (1995) Purification and characterization of toluene 2-monooxygenase from Burkholderia cepacia G4. Biochemistry 34:14066–14076

    CAS  Google Scholar 

  • Peterson JA, Lorence MC, Amarneh B (1990) Putidaredoxin reductase and putidaredoxin. Cloning, sequence determination, and heterologous expression of the proteins. J Biol Chem 265:6066–6073

    CAS  Google Scholar 

  • Purich DL (2010) Regulatory behavior of enzymes. Enzyme kinetics: catalysis & control: a reference of theory and best-practice methods, 1st edn. Elsevier-Academic Press, Amsterdam, pp 685–728

    Google Scholar 

  • Reardon KF, Mosteller DC, Bull Rogers JD (2000) Biodegradation kinetics of benzene, toluene, and phenol as single and mixed substrates for Pseudomonas putida F1. Biotechnol Bioeng 69:385–400

    CAS  Google Scholar 

  • Reddy DM, Pagadala NS, Reddy HK, Kishor PBK, Reddy G (2008) Role of toluene dioxygenase in biodegradation of 2-picoline from Pseudomonas putida. A homology modeling and docking study. Int J Integr Biol 5:187–191

    Google Scholar 

  • Rogers JE, Gibson DT (1977) Purification and properties of cis-toluene dihydrodiol dehydrogenase from Pseudomonas putida. J Bacteriol 130:1117–1124

    CAS  Google Scholar 

  • Segel IH (2014) Enzyme kinetics: behavior and analysis of rapid equilibrium and steady-state enzyme systems. Wiley, New York

    Google Scholar 

  • Sevrioukova IF, Garcia C, Li H, Bhaskar B, Poulos TL (2003) Crystal structure of putidaredoxin, the [2Fe–2S] component of the P450cam monooxygenase system from Pseudomonas putida. J Mol Biol 333:377–392

    CAS  Google Scholar 

  • Sevrioukova IF, Poulos TL (2011) Structural biology of redox partner interactions in P450cam monooxygenase: a fresh look at an old system. Arch Biochem Biophys 507:66–74

    CAS  Google Scholar 

  • Shimada H, Nagano S, Hori H, Ishimura Y (2001) Putidaredoxin–cytochrome P450cam interaction. J Inorg Biochem 83:255–260

    CAS  Google Scholar 

  • Shou M (2002) Kinetic analysis for multiple substrate interaction at the active site of cytochrome P450. Methods Enzymol 357:261–276

    CAS  Google Scholar 

  • Subramanian V, Liu TN, Yeh WK, Gibson DT (1979) Toluene dioxygenase: purification of an iron-sulfur protein by affinity chromatography. Biochem Biophys Res Commun 91:1131–1139

    CAS  Google Scholar 

  • Subramanian V, Liu TN, Yeh WK, Narro M, Gibson DT (1981) Purification and properties of NADH-ferredoxinTOL reductase. A component of toluene dioxygenase from Pseudomonas putida. Biol Chem 256:2723–2730

    CAS  Google Scholar 

  • Subramanian V, Liu TN, Yeh WK, Serdar CM, Wackett LP, Gibson DT (1985) Purification and properties of ferredoxinTOL. A component of toluene dioxygenase from Pseudomonas putida F1. Biol Chem 260:2355–2363

    CAS  Google Scholar 

  • Suenaga H, Sato M, Goto M, Takeshita M, Furukawa K (2006) Steady-state kinetic characterization of evolved biphenyl dioxygenase, which acquired novel degradation ability for benzene and toluene. Biosci Biotechnol Biochem 70:1021–1025

    CAS  Google Scholar 

  • Suma Y, Lim HL, Kwean OS, Cho S, Yang J, Kim Y, Kang CS, Kim HS (2016) Enzymatic degradation of aromatic hydrocarbon intermediates using a recombinant dioxygenase immobilized onto surfactant-activated carbon nanotube. Bioresour Technol 210:117–122

    CAS  Google Scholar 

  • Talley JW (2006) Bioremediation of recalcitrant compounds. Taylor & Francis Group, LLC, Boca Raton

    Google Scholar 

  • United States Environmental Protection Agency (2005) Toxicological review of toluene (CAS No. 108-88-3). In: Support of Summary Information on the Integrated Risk Information System (IRIS), Washington, DC

  • Wojcieszyńska D, Hupert-Kocurek K, Jankowska A, Guzik U (2012) Properties of catechol 2, 3-dioxygenase from crude extract of Stenotrophomonas maltophilia strain KB2 immobilized in calcium alginate hydrogels. Biochem Eng J 66:1–7

    Google Scholar 

  • Williams PA, Sayers JR (1994) The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. Biodegradation 5:195–217

    CAS  Google Scholar 

  • Yen KM, Karl MR, Blatt LM, Simon MJ, Winter RB, Fausset PR, Lu HS, Harcourt AA, Chen KK (1991) Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase. J Bacteriol 173:5315–5327

    CAS  Google Scholar 

  • Zhou Y, Huang H, Shen D (2016) Multi-substrate biodegradation interaction of 1,4-dioxane and BTEX mixtures by Acinetobacter baumannii DD1. Biodegradation 27:37–46

    CAS  Google Scholar 

  • Zylstra GJ, McCombie WR, Gibson DT, Finette BA (1988) Toluene degradation by Pseudomonas putida F1: genetic organization of the tod operon. Appl Environ Microbiol 54:1498–1503

    CAS  Google Scholar 

  • Zylstra GJ, Gibson DT (1989) Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. Biol Chem 264:14940–14946

    CAS  Google Scholar 

Download references

Funding

This research was supported by the National Research Foundation of Korea Grant funded by the Korea Ministry of Science and ICT (2016R1A2B4010126) and the Korea Institute of Energy Technology Evaluation and Planning and the Ministry of Trade, Industry and Energy (20174010201490).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Han S. Kim.

Additional information

Responsible editor: Robert Duran

Electronic supplementary material

ESM 1

(DOC 3499 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yang, J.W., Cho, W., Lim, Y. et al. Evaluation of aromatic hydrocarbon decomposition catalyzed by the dioxygenase system and substitution of ferredoxin and ferredoxin reductase. Environ Sci Pollut Res 26, 34047–34057 (2019). https://doi.org/10.1007/s11356-018-3200-y

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11356-018-3200-y

Keywords

Navigation