Skip to main content
Log in

Complete genome sequence of enterovirus 87 isolated from a child with acute flaccid paralysis in China in 2000

  • Published:
Virus Genes Aims and scope Submit manuscript

Abstract

Enterovirus 87 (EV87) is a new member of species Human Enterovirus B. So far, only the genome sequence of the prototype strain from Bangladesh is available. Here, we report the genome sequence of EV87 strain LY02/SD/CHN/2000 isolated from an acute flaccid paralysis case in Shandong Province, China, in 2000. It has a genome of 7423 nucleotides. Compared with the prototype strain, it had 80.3 % nucleotide and 95.5 % amino acid similarity in the VP1 coding region and 82.8 % complete genome similarity, reflecting distant genetic relationship between them. Phylogenetic analysis provided evidence of recombination with other serotypes in the P2 and P3 coding regions.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

References

  1. O. Le Gall, P. Christian, C.M. Fauquet, A.M. King, N.J. Knowles, N. Nakashima, G. Stanway, A.E. Gorbalenya, Arch. Virol. 153, 715–727 (2008)

    Article  PubMed  Google Scholar 

  2. M.A. Pallansch, R.P. Roos, in Fields Virology, 5th edn., ed. by D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Lippincott Williams & Wilkins, Philadelphia, 2007), pp. 839–893

    Google Scholar 

  3. M.S. Oberste, K. Maher, D.R. Kilpatrick, M.A. Pallansch, J. Virol. 73, 1941–1948 (1999)

    PubMed  CAS  Google Scholar 

  4. M.S. Oberste, K. Maher, S.M. Michele, G. Belliot, M. Uddin, M.A. Pallansch, J. Gen. Virol. 86, 445–451 (2005)

    Article  PubMed  CAS  Google Scholar 

  5. N.J. Knowles, T. Hovi, T. Hyypiä, A.M.Q. King, M. Lindberg, M.A. Pallansch, A.C. Palmenberg, P. Simmonds, T. Skern, G. Stanway, T. Yamashita, R. Zell, in Virus taxonomy: classification and nomenclature of viruses: Ninth Report of the International Committee on Taxonomy of Viruses, ed. by A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Elsevier, San Diego, 2011), pp. 855–880

    Google Scholar 

  6. M.S. Oberste, K. Maher, W.A. Nix, S.M. Michele, M. Uddin, D. Schnurr, S. Al-Busaidy, C. Akoua-Koffi, M.A. Pallansch, Virus Res. 128, 34–42 (2007)

    Article  PubMed  CAS  Google Scholar 

  7. M.S. Oberste, K. Maher, M.R. Flemister, G. Marchetti, D.R. Kilpatrick, M.A. Pallansch, J. Clin. Microbiol. 38, 1170–1174 (2000)

    PubMed  CAS  Google Scholar 

  8. A. Kroneman, H. Vennema, K. Deforche, H.V. Avoort, S. Peñaranda, M.S. Oberste, J. Vinjé, M. Koopmans, J. Clin. Virol. 51, 121–125 (2011)

    Article  PubMed  CAS  Google Scholar 

  9. T.A. Hall, Nucleic Acids Symp. Ser. 41, 95–98 (1999)

    CAS  Google Scholar 

  10. K. Tamura, J. Dudley, M. Nei, S. Kumar, Mol. Biol. Evol. 24, 1596–1599 (2007)

    Article  PubMed  CAS  Google Scholar 

  11. K.S. Lole, R.C. Bollinger, R.S. Paranjape, D. Gadkari, S.S. Kulkarni, N.G. Novak, R. Ingersoll, H.W. Sheppard, S.C. Ray, J. Virol. 73, 152–160 (1999)

    PubMed  CAS  Google Scholar 

  12. T. Bingjun, H. Yoshida, W. Yan, L. Lin, T. Tsuji, H. Shimizu, T. Miyamura, J. Med. Virol. 80, 670–679 (2008)

    Article  PubMed  Google Scholar 

  13. Z. Tao, H. Wang, Y. Li, A. Xu, Y. Zhang, L. Song, H. Yoshida, Q. Xu, J. Yang, Y. Zhang, Y. Liu, L. Feng, W. Xu, Appl. Environ. Microbiol. 77, 3786–3792 (2011)

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This study was supported by the Science and Technology Development Planning Project of Shandong Province (2012YD18044) and a Grant from Health Department of Shandong Province (2011QZ013).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Aiqiang Xu or Yanyan Song.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Tao, Z., Cui, N., Xu, A. et al. Complete genome sequence of enterovirus 87 isolated from a child with acute flaccid paralysis in China in 2000. Virus Genes 47, 156–159 (2013). https://doi.org/10.1007/s11262-013-0910-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11262-013-0910-6

Keywords

Navigation