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Phylogenetic analysis of NS5B gene of classical swine fever virus isolates indicates plausible Chinese origin of Indian subgroup 2.2 viruses

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Abstract

Twenty-three CSFV isolates recovered from field outbreaks in various parts of India during 2006–2009 were used for genetic analysis in the NS5B region (409 nts). Seventeen of these were studied earlier [16] in the 5′UTR region. Phylogenetic analysis indicated the continued dominance of subgroup 1.1 strains in the country. Detailed analysis of a subgroup 2.2 virus indicated the plausible Chinese origin of this subgroup in India and provided indirect evidence of routes of CSFV movement within South East Asia region.

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Acknowledgments

The authors are grateful to the Indian Council of Agricultural Research for providing funds and necessary facilities. The authors are also thankful to the Directors and the scientists of various state biological institutes and veterinary colleges. Special thanks to Late Prof. Irene Grieserwilkie for letting us to access EURL database, and the authors wish to dedicate this article in her memory.

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Authors and Affiliations

  1. Project Directorate on Animal Disease Monitoring and Surveillance, HA Farm Post, Hebbal, Bangalore, 560024, India

    S. S. Patil, D. Hemadri, H. Veeresh, K. Sreekala, M. R. Gajendragad & K. Prabhudas

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  1. S. S. Patil
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  2. D. Hemadri
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  3. H. Veeresh
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  4. K. Sreekala
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  5. M. R. Gajendragad
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  6. K. Prabhudas
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Correspondence to D. Hemadri.

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Patil, S.S., Hemadri, D., Veeresh, H. et al. Phylogenetic analysis of NS5B gene of classical swine fever virus isolates indicates plausible Chinese origin of Indian subgroup 2.2 viruses. Virus Genes 44, 104–108 (2012). https://doi.org/10.1007/s11262-011-0572-1

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  • DOI: https://doi.org/10.1007/s11262-011-0572-1

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