Abstract
Temozolomide and quercetin are both molecules with important pharmaceutical activity, whose effects can mutually enhance one another when clinically applied simultaneously. Quantum chemical calculations are used to examine how the two molecules might interact with one another. The most stabilizing force arises when the aromatic systems of the two molecules are arranged parallel to one another. These stacked configurations are reinforced by H-bonds, but geometries containing only H-bonds, without the aromatic stacking, are much less stable, even if the H-bonds are short and strong. Comparison between B3LYP and B3LYP-D binding energies allows an evaluation of dispersion energy, which is found to be a primary contributor to the stability of the stacked structures.
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Chen SF, Nieh S, Jao SW, Liu CL, Wu CH, Chang YC et al (2012) Quercetin suppresses drug-resistant spheres via the p38 MAPK-Hsp27 apoptotic pathway in oral cancer cells. PLoS ONE 7:e49275
Schultz CR, Golembieski WA, King DA, Brown SL, Brodie C, Rempel SA (2012) Inhibition of HSP27 alone or in combination with pAKT inhibition as therapeutic approaches to target SPARC-induced glioma cell survival. Mol Cancer 11(20):1–24
Russo M, Palumbo R, Tedesco I, Mazzarella G, Russo P, Iacomino G et al (1999) Quercetin and anti-CD95(Fas/Apo1) enhance apoptosis in HPB-ALL cell line. FEBS Lett 462:322–328
Min K, Ebeler SE (2008) Flavonoid effects on DNA oxidation at low concentrations relevant to physiological levels. Food Chem Toxicol 46:96–104
Ghobrial IM, Witzig TE, Adjei A (2005) Targeting apoptosis pathways in cancer therapy. CA Cancer J Clin 5:178–194
Jakubowicz-Gil J, Langner E, Rzeski W (2011) Kinetic studies of the effects of Temodal and quercetin on astrocytoma cells. Pharmacol Rep 63:403–416
Jakubowicz-Gil J, Langner E, Wertel I, Piersiak T, Rzeski W (2010) Temozolomide, quercetin and cell death in the MOGGCCM astrocytoma cell line. Chem Biol Interact 188:190–203
Jakubowicz-Gil J, Langner E, Badwiul D, Wertel I (2013) Silencing of Hsp27 and Hsp72 in glioma cells as a tool for programmed cell death induction upon temozolomide and quercetin treatment. Toxicol Appl Pharmacol 273:580–589
Sang D, Li R, Lang Q (2014) Quercetin sensitizes human glioblastoma cells to temozolomide in vitro via inhibition of Hsp27. Acta Pharmacol Sin 35:832–838
Protsenko IO, Bulavin LA, Hovorun DM (2010) Investigation of structural properties of quercetin by quantum chemistry methods. In: WDS’10 proceedings of contributed papers, part III, 51–54
Wang X, Li S, Jiang X, Wang C (2015) Site-preference of quercetin hydrogen bonding to adenine. Chem J Chin 36:932–938
Filip X, Grosu IG, Miclăuş M, Filip C (2013) NMR crystallography methods to probe complex hydrogen bonding networks: application to structure elucidation of anhydrous quercetin. CrystEngComm 15:4131–4142
Pawlikowska-Pawlęga B, Dziubińska H, Król E, Trębacz K, Jarosz-Wilkołazka A, Paduch R, Gawron A, Gruszecki WI (2014) Characteristics of quercetin interactions with liposomal and vacuolar membranes. Biochim Biophys Acta 1838(1 Pt B):254–265
Islam MR, Zaman A, Jahan I, Chakravorty R (2013) In silico QSAR analysis of quercetin reveals its potential as therapeutic drug for Alzheimer’s disease. J Young Pharm 5:173–179
Bhat Q, Ahmad S (2015) Quantum chemical calculations and analysis of FTIR, FT–Raman and UV–Vis spectra of temozolomide molecule. J Mol Struct 1099:453–462
Kasende OE, Matondo A, Muzomwe M, Muya JT, Scheiner S (2014) Interaction between temozolomide and water: preferred binding sites. Comput Theor Chem 1034:26–29
Kasende OE, Muya JT, Scheiner S (2015) Regioselectivity of the interaction of temozolomide with borane and boron trifluoride. Struct Chem 26:1359–1365
Kasende OE, Matondo A, Muya JT, Scheiner S (2016) Interaction between temozolomide and HCl: preferred binding sites. Comput Theor Chem 1075:82–86
Galek P, Pidcock E, Wood P (2011) CCDC, CSD Solid Form Suite, http://www.ccdc.cam.ac.uk/products/csd_solid_form_suite
Lowe PR, Sansom CE, Schwalbe CH, Stevens MF, Clark AS (1992) Antitumor imidazotetrazines. 25. Crystal structure of 8-carbamoyl-3-methylimidazo [5,1- d]-1,2,3,5-tetrazin-4(3H)-one (temozolomide) and structural comparisons with the related drugs mitozolomide and DTIC. J Med Chem 35:3377–3382
Babu NJ, Sanphui P, Nangia A (2012) Crystal engineering of stable temozolomide cocrystals. Chem Asian J 7:2274–2285
Babu NJ, Sanphui P, Nath NK, Khandavilli UBR, Nangia A (2013) Temozolomide hydrochloride dehydrate. CrystEngComm 15:666–671
Kasende OE, Muya JT, Nziko VPN, Scheiner S (2016) Hydrogen bonded and stacked geometries of the temozolomide dimer. J Mol Model 22:77
Kasende OE, Nziko VPN, Scheiner S (2016) H-bonding and stacking interactions between chloroquine and temozolomide. Int J Quantum Chem 116(16):1196–1204. doi:10.1002/qua.2512
Hobza P, Müller-Dethlefs K (2010) Non-covalent interactions: theory and experiment. Royal Society of Chemistry, Cambridge
Karshikoff A (2006) Non-covalent interactions in proteins. World Scientific, London
Scheiner S (2015) Noncovalent forces. Springer, Switzerland
Maharramov AM, Mahmudov KT, Kopylovich MN, Pombeiro AJL (2016) Non-covalent interactions in the synthesis and design of new compounds. Wiley. ISBN: 978-1-119-10989-1
Lodish H (2000) Molecular cell biology, 4th edn. WH Freeman, New York
Schuster P, Zundel G, Sandorfy C (eds) (1976) The hydrogen bond, recent developments in theory and experiments. North-Holland Publishing Co., Amsterdam
Schuster P (1984) Hydrogen bonds. Springer-Verlag, Berlin, p 120
Jeffrey GA, Saenger W (1991) Hydrogen bonding in biological structures. Springer-Verlag, Berlin
Scheiner S (1997) Hydrogen bonding. A theoretical perspective. Oxford University Press, New York
Gilli G, Gilli P (2009) The nature of the hydrogen bond. Oxford University Press, Oxford
Wieczorek R, Dannenberg JJ (2003) H-bonding cooperativity and energetics of helix formation of five 17-amino acid peptides. J Am Chem Soc 125:8124–8129
Alabugin IV, Manoharan M, Peabody S, Weinhold F (2003) The electronic basis of improper hydrogen bonding: a subtle balance of hyperconjugation and rehybridization. J Am Chem Soc 125:5973–5987
Hernández-Soto H, Weinhold F, Francisco JS (2007) Radical hydrogen bonding: origin of stability of radical-molecule complexes. J Chem Phys 127:164102–164110
DelBene JE, Alkorta I, Elguero J (2011) An ab initio study of cooperative effects in ternary complexes X: CNH: Z with X, Z = CNH, FH, ClH, FCl, and HLi: structures, binding energies, and spin–spin coupling constants across intermolecular bonds. Phys Chem Chem Phys 13:13951–13961
Thakur TS, Kirchner MT, Blaser D, Boese R, Desiraju GR (2011) Nature and strength of C–H⋯O interactions involving formyl hydrogen atoms: computational and experimental studies of small aldehydes. Phys Chem Chem Phys 13:14076–14091
Mirzaei S, Khalilian MH, Taherpour AA (2015) Mechanistic study of the hydrolytic degradation and protonation of temozolomide. RSC Adv 5:41112–41119
Becke AD (1993) Density-functional thermochemistry. III. The role of exact exchange. J Chem Phys 98:5648–5662
Grimme S (2011) Density functional theory with London dispersion corrections. WIREs Comp Mol Sci 1:211–228
Zhao Y, Truhlar DG (2008) The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals. Theor Chem Acc 120:215–241
Walker M, Harvey AJA, Sen A, Dessent CEH (2013) Performance of M06, M06-2X, and M06-HF density functionals for conformationally flexible anionic clusters: M06 functionals perform better than B3LYP for a model system with dispersion and ionic hydrogen-bonding interactions. J Phys Chem A 117:12590–12600
Cohen AJ, Mori-Sánchez P, Yang W (2012) Challenges for density functional theory. Chem Rev 112:289–320
Hohenstein EG, Chill ST, Sherrill CD (2008) Assessment of the performance of the M05 − 2X and M06 − 2X exchange-correlation functionals for noncovalent interactions in biomolecules. J Chem Theor Comput 4:1996–2000
Riley KE, Pitoňák M, Jurečka P, Hobza P (2010) Stabilization and structure calculations for noncovalent interactions in extended molecular systems based on wave function and density functional theories. Chem Rev 110:5023–5063
Ferrighi L, Pan Y, Grönbeck H, Hammer B (2012) Stabilization and structure calculations for noncovalent interactions in extended molecular systems based on wave function and density functional theories. J Phys Chem 116:7374–7379
Chai JD, Head M (2008) Long-range corrected hybrid density functional with damped atom–atom dispersion corrections. Phys Chem Chem Phys 10:6615–6620
DiLabio GA, Johnson ER, Otero-de-la-Roza A (2013) Performance of conventional and dispersion-corrected density-functional theory methods for hydrogen bonding interaction energies. Phys Chem Chem Phys 15:12821–12828
Gutowski M, van Duijneveldt-van de Rijdt JGCM, van Lenthe JH, van Dujneveldt FB (1993) Accuracy of the boys and bernardi function counterpoise method. J Chem Phys 98:4728–4738
Boys SF, Bernardi F (1970) The calculation of small molecular interactions by the difference of separate total energies. Some procedures with reduced errors. Mol Phys 19:553–566
Grimme S, Antony J, Ehrlich S, Krieg H (2010) A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. J Chem Phys 132:154104–154119
Grimme S, Ehrlich S, Goerigk L (2011) Effect of the damping function in dispersion corrected density functional theory. J Comput Chem 32:1456–1465
Becke AD, Johnson ER (2005) Exchange-hole dipole moment and the ospersion interaction. J Chem Phys 122:154104
Johnson ER, Becke AD (2005) A density-functional model of the dispersion interaction. J Chem Phys 123:024101
Axilrod BM, Teller E (1943) Interaction of the van der Waals type between three atoms. J Chem Phys 11:299–300
Mutto J (1943) Force between non-polar molecules. Proc Phys Math Soc Jpn 17:629–631
Dennington R, Keith T, Millan J (2009) GaussView, version 5. Semichem. Inc., Shawnee Mission, KS
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA et al (2009) Gaussian 09, revision A.02. Gaussian Inc., Wallingford, CT
Glendening ED, Badenhoop JK, Reed AE, Carpenter JE, Bohmann JA, Morales CM, Landis CR, Weinhold F (2013) NBO 6.0. Theoretical Chemistry Institute, University of Wisconsin, Madison
Bader RFW (1990) Atoms in molecules, a quantum theory, vol 22. Clarendon Press, Oxford, p 438
Carroll MT, Chang C, Bader RFW (1988) Mol Phys 63:387–405
Keith TA (2013) AIMALL. TK Gristmill Software, Overland Park, KS
Espinosa E, Molins E, Lecomte C (1998) Hydrogen bond strengths revealed by topological analyses of experimentally observed electron densities. Chem Phys Lett 285:170–173
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O.E.K. would like to thank the Council for International Exchange of Scholars (CIES) for a Fulbright Visiting Scholar grant at Utah State University. Computer, storage and other resources from the Division of Research Computing in the Office of Research and Graduate Studies at Utah State University are gratefully acknowledged.
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Kasende, O.E., Nzuwah-Nziko, V.P. & Scheiner, S. Interactions between temozolomide and quercetin. Struct Chem 27, 1577–1588 (2016). https://doi.org/10.1007/s11224-016-0788-8
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DOI: https://doi.org/10.1007/s11224-016-0788-8