Skip to main content
Log in

The influence of halogen bonds on tautomerism: the case of 3-mercapto-1,2-azoles (pyrazoles, isoxazoles, isothiazoles)

  • Original Research
  • Published:
Structural Chemistry Aims and scope Submit manuscript

Abstract

DFT calculations at the B3LYP/6-311++G(d,p) computational level have been carried out on three tautomeric pairs of 3-mercapto-1,2-azoles (pyrazoles, isoxazoles, and isothiazoles) to study the effect of halogen bonds (XBs) on the position of the equilibrium. As halogen bond donors, we have selected Br2, Cl2, BrCl, ClF and BrF and compare them with HF as a hydrogen bond donor. Several linear relationships were found between binding energies of different halogen bond donors. The main conclusion of this study is that the XB inverts the tautomeric equilibrium while an HB does not.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  1. Elguero J, Marzin C, Katritzky AR, Linda P (1976) The tautomerism of heterocycles. Academic Press, New York, NY

    Google Scholar 

  2. Minkin VI, Garnovskii AD, Elguero J, Katritzky AR, Denisko OV (2000) Adv Heterocycl Chem 76:157–323

    Article  CAS  Google Scholar 

  3. O’Connell MJ, Ramsay CG, Steel PJ (1985) Aust J Chem 38:401–409

    Article  Google Scholar 

  4. Kyrychenko A, Stepanenko Y, Waluk J (2000) J Phys Chem A 104:9542–9555

    Article  CAS  Google Scholar 

  5. Alkorta I, Elguero J (2002) J Org Chem 67:1515–1519

    Article  CAS  Google Scholar 

  6. Alkorta I, Elguero J (2009) How aromaticity affects the chemical and physicochemical properties of heterocycles: a computational approach. In: Krygowski TM, Cyránski MK (eds) Aromaticity in heterocyclic compounds, Topics in Heterocyclic Chemistry (Series Ed Gupta RR), vol 19. Springer, Berlin, Heidelberg

    Chapter  Google Scholar 

  7. Nagy PI (2014) Int J Mol Sci 15:19562–19633

    Article  CAS  Google Scholar 

  8. Metrangolo P, Resnati G (2001) Chem Eur J 7:2511–2519

    Article  CAS  Google Scholar 

  9. Legon AC (2008) Struct Bond 126:17–64

    Article  CAS  Google Scholar 

  10. Alkorta I, Blanco F, Solimannejad M, Elguero J (2008) J Phys Chem A 112:10856–10863

    Article  CAS  Google Scholar 

  11. El-Sheshtawy HS, Salman HMA, El-Kemary M (2015) Spectrochim Acta Part A 137:442–449

    Article  CAS  Google Scholar 

  12. Auffinger P, Hays FA, Ho PS (2004) PNAS 101:16789–16794

    Article  CAS  Google Scholar 

  13. Katritzky AR, Hall CD, El-Gendy BEM, Draghici B (2010) J Comput Aided Mol Des 24:475–484

    Article  CAS  Google Scholar 

  14. Scholfield MR, Vander Zanden CM, Carter M, Ho PS (2013) Protein Sci 22:139–152

    Article  CAS  Google Scholar 

  15. Alkorta I, Rozas I, Elguero J (1998) J Phys Chem A 102:9278–9285

    Article  CAS  Google Scholar 

  16. Alkorta I, Blanco F, Elguero J (2009) Struct Chem 20:63–71

    Article  CAS  Google Scholar 

  17. Arriau J, Elguero J (1981) An Quim 77:105–111

    CAS  Google Scholar 

  18. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, KitaoO, Nakai H, Vreven T, Montgomery JA Jr, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam NJ, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas Ö, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) Gaussian 09, revision D.01. Gaussian, Wallingford

  19. Parr RG, Yang W (1989) Density-functional theory of atoms and molecules. Oxford University Press, New York, NY

    Google Scholar 

  20. Bartolotti LJ, Fluchichk K (1996) An introduction to density functional theory. In: Lipkowitz KB, Boyds DB (eds) Reviews in computational chemistry, vol 7. VCH, New York, NY

    Google Scholar 

  21. Kohn W, Becke AD, Parr RG (1996) J Phys Chem 100:12974–12980

    Article  CAS  Google Scholar 

  22. Ziegler T (1991) Chem Rev 91:651–667

    Article  CAS  Google Scholar 

  23. Tian L, Feiwu C (2012) J Comp Chem 33:580–592

    Article  Google Scholar 

  24. Jmol: An open-source java viewer for chemical structures in 3D, version 130. http://www.jmolorg/. Accessed 26 Sept 2013

  25. Reed AE, Curtiss LA, Weinhold F (1988) Chem Rev 88:899–926

    Article  CAS  Google Scholar 

  26. Glendening ED, Badenhoop JK, Reed AE, Carpenter JE, Bohmann JA, Morales CM, Landis CR, Weinhold F (2013) NBO-6; Theoretical Chemistry Institute. University of Wisconsin, Madisn, WI

    Google Scholar 

  27. Popelier PL (2000) Atoms in molecules: an introduction. Prentice Hall, London

    Book  Google Scholar 

  28. Bader RFW (1990) Atoms in molecules: a quantum theory. Oxford University Press, Oxford

    Google Scholar 

  29. Keith TA (2013) AIMAll (Version 13.10.19) TK Gristmill Software, Overland Park KS, USA. http://aim.tkgristmill.com. Accessed 4 July 2013

  30. Politzer P, Lane P, Concha MC, Ma Y, Murray JS (2007) J Mol Model 13:305–311

    Article  CAS  Google Scholar 

  31. Kalescky R, Zou W, Kraka E, Cremer D (2014) J Phys Chem A 118:1948–1963

    Article  CAS  Google Scholar 

  32. Knop O, Boyd RJ, Choi SC (1988) J Am Chem Soc 110:7299–7301

    Article  CAS  Google Scholar 

  33. Alkorta I, Elguero J (2004) Struct Chem 15:117–120

    Article  CAS  Google Scholar 

  34. Alkorta I, Solimannejad M, Provasi P, Elguero J (2007) J Phys Chem A 111:7154–7161

    Article  CAS  Google Scholar 

  35. Mata I, Alkorta I, Molins E, Espinosa E (2010) Chem Eur J 16:2442–2452

    Article  CAS  Google Scholar 

  36. Rozas I, Alkorta I, Elguero J (2000) J Am Chem Soc 122:11154–11161

    Article  CAS  Google Scholar 

  37. Antonov L (ed) (2014) Tautomerism methods and theories. Wiley-VCH, Weinheim

    Google Scholar 

  38. Lipkowitz KB, Boyd DB (eds) (1991) Reviews in computational chemistry, vol 2. Wiley-VCH, New York, NY

    Google Scholar 

  39. Katritzky AR, Hall CD, El-Gendy BEDM, Draghici B (2010) J Comput Aided Mol Des 24:475–484

    Article  CAS  Google Scholar 

  40. Metrangolo P, Resnati G (eds) (2008) Halogen bonding, fundamentals and applications, structure and bonding, vol 126. Springer, Berlin Heidelberg

    Google Scholar 

  41. Scholfield MR, Vander Zanden CM, Carter M, Ho PS (2013) Protein Sci 22:139–152

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work has been supported by the Spanish Ministerio de Economía y Competitividad (CTQ2012-35513-C02-02) and Comunidad Autónoma de Madrid (S2013/MIT-2841, Fotocarbon). Computer, storage, and other resources from the CTI (CSIC) are gratefully acknowledged. One of us (M.M.-L.) benefits from a contract from the Ministerio de Economía y Competitividad.

Conflict of interest

The authors declare no conflict of interest.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ibon Alkorta.

Additional information

Marta Marín-Luna was on leave from Departamento de Química Orgánica, Facultad de Química, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 7348 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Marín-Luna, M., Alkorta, I. & Elguero, J. The influence of halogen bonds on tautomerism: the case of 3-mercapto-1,2-azoles (pyrazoles, isoxazoles, isothiazoles). Struct Chem 26, 639–645 (2015). https://doi.org/10.1007/s11224-015-0581-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11224-015-0581-0

Keywords

Navigation