Abstract
Peptides derived from food sources exhibit many different biological properties, including antioxidant activities. Some antioxidant activities are attributed to the scavenging of free radicals through electron transfer. In this study, the quantum chemical parameters associated with electron transfer were investigated. All calculations were performed using the Gaussian 03 W software package using DFT theory (B3LYP hybrid functions), together with the 6-311 + G (d, p) basis set that supported the experimental free radical (·OH and O2 −·) scavenging activities. The results of the scavenging O2 −· model (R 2 = 0.882, Q 2 = 0.824) demonstrated that O2 −· model has a high statistical significance and remarkable predictive ability; however, ·OH model was not prominent. We used the multiple linear regression to build the model and used the leave-one-out method to verify the regression’s prediction. The results showed that EHOMO and L, related to electron donating ability, are the most important parameters for understanding the free radical especially O2 −· scavenging ability of antioxidant peptides. The information obtained from this study could provide clues for the guided synthesis of antioxidant peptides.
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Venkateshappa C, Harish G, Mythri RB, Mahadevan A, Bharath MS, Shankar SK (2012) Neurochem Res 37:358–369
Venkateshappa C, Harish G, Mahadevan A, Bharath MS, Shankar SK (2012) Neurochem Res 37:1601–1614
Li Y, Kong D, Ahmad A, Bao B, Sarkar FH (2013) Antioxid Redox Sign 19:139–150
Contreras MM, Hernández-Ledesma B, Amigo L, Martín-Álvarez PJ, Recio I (2011) LWT-Food Sci Technol 44:9–15
Gómez-Ruiz JÁ, López-Expósito I, Pihlanto A, Ramos M (2008) Eur Food Res Technol 227:1061–1067
Beermann C, Euler M, Herzberg J, Stahl B (2009) Eur Food Res Technol 229(4):637–644
Padrón-García JA, Alonso-Tarajano M, Alonso-Becerra E (2009) Proteins 75:859–869
Du QS, Huang RB, Chou KC (2008) Curr Protein Pept Sci 9:248–259
Tong J, Liu S, Zhou P, Wu B, Li Z (2008) J Theor Biol 253:90–97
Zhou P, Chen X, Wu Y, Shang Z (2010) Amino Acids 38:199–212
Amic D, Davidovic-Amic D, Beslo D, Rastija V, Lucic B, Trinajstic N (2007) Curr Med Chem 14(7):827–845
Rasulev BF, Abdullaev ND, Syrov VN, Leszczynski J (2005) QSAR Comb Sci 24(9):1056–1065
Lien EJ, Ren S, Bui HH, Wang R (1999) Free Radical Bio Med 26(3):285–294
van Acker SABE, de Groot MJ, van den Berg DJ, Tromp MN, Donné-Op den Kelder G, van der Vijgh WJ, Bast A (1996) Chem Res Toxicol 9(8):1305–1312
Prouillac C, Vicendo P, Garrigues JC, Poteau R, Rima G (2009) Free Radic Bio Med 46(8):1139–1148
Supratim Ray, Kakali De, Chandana Sengupta, Kunal Roy (2008) Indian J Biochem Bio 45(3):198
Pasha FA, Cho SJ, Beg Y, Tripathi YB (2007) Med Chem Res 16(7–9):408–417
Ribeiro T, Motta A, Marcus P, Gaigeot MP, Lopez X, Costa D (2013) J Inorg Biochem 128:164–173
Najafi M, Nazarparvar E, Mood KH, Zahedi M, Klein E (2011) Comput Theor Chem 965(1):114–122
Sablon N, De Proft F, Geerlings P (2010) Chem Phys Lett 498(1):192–197
Xie HJ, Lei QF, Fang WJ (2012) Sci China Chem 55(9):1832–1841
Guo HY (2009) Preparation of antioxidant peptide from wheat germ protein by enzymatic hydrolysis. Jiangsu University, Zhenjiang
Hu L, Song R, Gu Z (2012) Afr J Biotechnol 11:3640–3648
Suetsuna K, Chen JR (2002) Food Sci Technol Res 8:227–230
Zhang T, Li Y, Miao M, Jiang B (2011) Food Chem 128(1):28–33
Chen HM, Muramoto K, Yamauchi F (1995) J Agri Food Chem 43:574–578
Wen Y, Yaping Z (2001) J Am Oil Chem Soc 78:697–701
Hypercube, Inc. Release H. 8.0 for windows, molecular modeling system, Hypercube[J]. Inc. http://www.hyper.com, 2002
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA, Montgomery JA Jr, Peralta JE, Ogliaro F, Bearpark MJ, Heyd J, Brothers EN, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell AP, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam NJ, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas ö, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2004) Gaussian 03, revision C.02. Gaussian Inc, Wallingford
Rimola A, Aschi M, Orlando R, Ugliengo P (2012) J Am Chem Soc 134:10899–10910
Topliss JG, Costello RJ (1972) J Med Chem 15:1066–1068
SPSS Base 17.0 Applications Guide (2009) SPSS Inc, Chicago IL
Valko M, Morris H, Cronin M (2005) Curr Med Chem 12:1161–1208
Sharma OP, Bhat TK (2009) Food Chem 113:1202–1205
Kovacic P, Pozos RS, Somanathan R, Shangari N (2005) Curr Med Chem 12:2601–2623
Valko M, Leibfritz D, Moncol J, Cronin MTD (2007) Int J Biochem Cell Bio 39:44–84
Alparone A (2013) Chem Phy Lett 563:88–92
Mladenović M, Mihailović M, Bogojević D (2011) Inter J Mol Sci 12:2822–2841
Benayahoum A, Amira-Guebailia H, Houache O (2013) J Mol Model 19:2285–2298
Pop R, Ştefănut MN (2012) Cent Eur J Chem 10:180–186
Yamagami C, Akamatsu M, Motohashi N (2005) Bioorg Med Chem Lett 15:2845–2850
Barzegar A, Davari M, Chaparzadeh N (2011) J Iran Chem Soc 8:973–982
Zhao PL, Li J, Yang GF (2007) Bioorg Med Chem 15:1888–1895
Nantasenamat C, Isarankura-Na-Ayudhy C, Naenna T, Prachayasittikul V (2008) J Mol Graph Model 27(2):188–196
Li YW, Li B, He J, Qian P (2011) J Mol Struct 998(1):53–61
Zhu L, Chen J, Tang X, Xiong YL (2008) J Agr Food Chem 56(8):2714–2721
Jurva U, Wikström HV, Bruins AP (2002) Rapid Commun Mass Sp 16(20):1934–1940
Acknowledgments
This work is financially supported by the National Natural Science Foundation of China (31171672, 31071523), the Key Programs from MOST (2012BAD34B02, 2011BAK10B05, 2012BAD29B05), Public Program from the General Administration of Quality Supervision (201310128),and Grants from the Ministry of Health Foundation of China (W201304), and Hunan Provincial Innovation Foundation for Postgraduate (CX2014B387).
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Yunhui Cheng and Fang Luo authors contributed to this paper equally.
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Cheng, Y., Luo, F., Zeng, Z. et al. DFT-based quantitative structure–activity relationship studies for antioxidant peptides. Struct Chem 26, 739–747 (2015). https://doi.org/10.1007/s11224-014-0533-0
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DOI: https://doi.org/10.1007/s11224-014-0533-0