Skip to main content
Log in

Environment-induced stabilization of hydrogen-bonded dimers in crystal of lysine (5-methyl-1H-[1,2,4]triazol-3ylsulfanyl)-acetate

  • Original Research
  • Published:
Structural Chemistry Aims and scope Submit manuscript

Abstract

Crystal and molecular structure of lysine (5-methyl-1H-[1,2,4]triazol-3-ylsulfanyl)-acetate was determined and intermolecular interactions between ions in crystal were investigated by quantum-chemical methods (MP2 and B3LYP-D). COSMO solvation method was used to account crystal field effects. While the gas-phase calculations significantly overestimate attraction between similarly charged and repulsion between oppositely charged ions, COSMO method provides results which are consistent with interaction energies estimated from AIM analysis of electron density distribution. Also, all hydrogen-bonded dimers found in crystal are intrinsically stable if modeled with COSMO method, contrary to gas phase calculations.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. Bush MF, Forbes MW, Jockusch RA, Oomens J, Polfer NC, Saykally RJ, Williams ERJ (2007) Phys Chem A 111:7753

    Article  CAS  Google Scholar 

  2. Bush MF, Omens J, Williams ERJ (2009) Phys Chem A 113:431

    Article  CAS  Google Scholar 

  3. Lemoff AS, Bush MF, O’Brien JT, Williams ERJ (2006) Phys Chem A 110:8433

    Article  CAS  Google Scholar 

  4. Rožman M, Srzić D, Klasinc L (2006) Int J Mass Spectrom 253:201

    Article  Google Scholar 

  5. Gao B, Wyttenbach T, Bowers MTJ (2009) Phys Chem B 113:9995

    Article  CAS  Google Scholar 

  6. Jockusch RA, Lemoff AS, Williams ERJ (2001) Phys Chem A 105:10929

    Article  CAS  Google Scholar 

  7. Prasad GS, Vijayan M (1991) Acta Crystallogr Sect B 47, Pt 6

  8. Pratap JV, Ravishankar R, Vijayan M (2000) Acta Crystallogr Sect B 56:690

    Article  CAS  Google Scholar 

  9. Saraswathi NT, Manoj N, Vijayan M (2001) Acta Crystallogr Sect B 57:366

    Article  CAS  Google Scholar 

  10. Saraswathi NT, Roy S, Vijayan M (2003) Acta Crystallogr Sect B 59:641

    Article  CAS  Google Scholar 

  11. Saraswathi NT, Vijayan M (2002) Acta Crystallogr Sect B 58:1051

    Article  CAS  Google Scholar 

  12. Selvaraj M, Thamotharan S, Roy S, Vijayan M (2007) Acta Crystallogr Sect B 63:459

    Article  CAS  Google Scholar 

  13. Sharma A, Thamotharan S, Roy S, Vijayan M (2006) Acta Crystallogr Sect C 62:o148

    Article  Google Scholar 

  14. Soman J, Rao T, Radhakrishnan R, Vijayan MJ (1989) Biomol Struct Dyn 7:269

    CAS  Google Scholar 

  15. Soman J, Suresh CG, Vijayan M (1988) Int J Pept Protein Res 32:352

    Article  CAS  Google Scholar 

  16. Suresh CG, Vijayan M (1983) Int J Pept Protein Res 22:617

    Article  CAS  Google Scholar 

  17. Suresh S, Vijayan M (1995) Acta Crystallogr Sect B 51:353

    Article  Google Scholar 

  18. Venkatraman J, Prabu MM, Vijayan MJ (1997) Pept Res 50:77

    Article  CAS  Google Scholar 

  19. Braga D, D’Oria E, Grepioni F, Mota F, Novoa JJ, Rovira C (2002) J Chem Eur 8:1173

    Article  CAS  Google Scholar 

  20. Braga D, Grepioni F, Novoa JJ (1998) Chem Commun p 1959

  21. Baran J, Ilczyszyn MM, Marchewka MK, Ratajczak H (1999) Spectrosc Lett 32:83

    Article  CAS  Google Scholar 

  22. Nelyubina YV, Antipin MY, Lyssenko KAJ (2009) Phys Chem A 113:3615

    Article  CAS  Google Scholar 

  23. Mazur IA, Belenichev IF, Kolesnik YuM, Abramov AV, Kucherenko LI, Voloshin NA, Chekman IS, Mamchur VI, Gorchakova NO, Georgievsky GV, Groshevoy TA. Lysine 3-methyl-1,2,4-triazol-5-thioacetate, exhibiting neuroprotective, nootropic, cardioprotective, endoteliotropnoe, antiischemic, antioxidant, anti-inflammatory and antihypoxic action, which has low toxicity. Russian Federation Patent 2370492 Oct 2009

  24. Sheldrick GM (2007) Acta Crystallogr Sect A Found Crystallogr 64:112

    Article  Google Scholar 

  25. Flack H (1983) Acta Crystallogr Sect A 39:876

    Article  Google Scholar 

  26. Becke ADJ (1993) Chem Phys 98:5648

    CAS  Google Scholar 

  27. Stephens PJ, Devlin FJ, Chabalowski CF, Frisch MJJ (1994) Phys Chem 98:11623

    Article  CAS  Google Scholar 

  28. Grimme SJ (2006) Comput Chem 27:1787

    Article  CAS  Google Scholar 

  29. Weigend F, Häser M (1997) Theor Chem Acc 97:331

    Article  CAS  Google Scholar 

  30. Weigend F, Häser M, Patzelt H, Ahlrichs R (1998) Chem Phys Lett 294:143

    Article  CAS  Google Scholar 

  31. Weigend F, Ahlrichs R (2005) Phys Chem Chem Phys 7:3297

    Article  CAS  Google Scholar 

  32. Sinnecker S, Rajendran A, Klamt A, Diedenhofen M, Neese FJ (2006) Phys Chem A 110:2235

    Article  CAS  Google Scholar 

  33. Bader RFW (1990) Atoms in molecules: a quantum theory. Oxford University Press, Oxford

    Google Scholar 

  34. Keith TA (2011) AIMAll, Version 11.03.14, TK Gristmill Software, Overland Park, KS

  35. Boys SF, Bernardi F (1970) Mol Phys 19:553

    Article  CAS  Google Scholar 

  36. Neese F (2010) ORCA—an ab initio, density functional and semiempirical program package, Version 2.8, Universitaet Bonn, Bonn

  37. Zubatyuk RI, Shishkina SV, Kucherenko LI, Mazur IA, Shishkin OV (2008) Struct Chem 19:407

    Article  CAS  Google Scholar 

  38. Braga D, Maini L, Polito M, Grepioni F (2004) In: Michael D, Mingos P (eds) Supramolecular assembly via hydrogen bonds II, vol 111. Springer, Berlin, p 1941

    Google Scholar 

  39. Grabowski SJJ (2001) Mol Struct 562:137

    Article  CAS  Google Scholar 

  40. Grabowski SJ (2006) Ann Rep Prog Chem Sect C 102:131

    Article  CAS  Google Scholar 

  41. Steiner T (2003) Cryst Rev 9:177

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Roman I. Zubatyuk.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Zubatyuk, R.I., Shishkina, S.V., Kucherenko, L.I. et al. Environment-induced stabilization of hydrogen-bonded dimers in crystal of lysine (5-methyl-1H-[1,2,4]triazol-3ylsulfanyl)-acetate. Struct Chem 23, 581–586 (2012). https://doi.org/10.1007/s11224-011-9893-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11224-011-9893-x

Keywords

Navigation