Skip to main content
Log in

Molecular structures of 8,8′-dithioureido-2,2′-binaphthalene derivatives and their anions recognition: an ONIOM investigation

  • Original Research
  • Published:
Structural Chemistry Aims and scope Submit manuscript

Abstract

The structures of 8,8′-bis(3-phenylthioureidomethyl)-2,2′-binaphthalene (1), 8,8′-bis(3-butylthioureidomethyl)-2,2′-binaphthalene (2) and their complexes with anionic guests such as carboxylate ions (acetate, oxalate, malonate, succinate, glutarate, adipate, pimelate, suberate, and azelate), inorganic oxygen-containing anions (nitrate, sulfate, bicarbonate, hydrogen phosphate, and dihydrogen phosphate), and halide ions (fluoride, chloride, and bromide) were obtained using the ONIOM approach. The binding abilities of receptors 1 and 2 to anionic species in terms of binding energy, thermodynamic properties, and selectivity coefficient were obtained at the ONIOM(B3LYP/6-31G(d):AM1) and BSSE-corrected B3LYP/6-31G(d)//ONIOM(B3LYP/6-31G(d):AM1) levels of theory. The multipoint hydrogen bonding between receptors (either the receptor 1 or 2) and anionic guests were found. The hydrogen phosphate is the most preferable ion to bind with either the receptor 1 or 2.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Scheme 1
Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

References

  1. Kato R, Nishizawa S, Hayashita T, Teramae N (2001) Tetrahedron Lett 42:5053–5056. doi:10.1016/S0040-4039(01)00916-9

    Article  CAS  Google Scholar 

  2. Lee DH, Lee KH, Hong J-I (2001) Org Lett 3:5–8. doi:10.1021/ol006690t

    Article  CAS  Google Scholar 

  3. Lee DH, Lee HY, Lee KH, Hong J-I (2001) Chem Commun (Camb) 1188–1189. doi:10.1039/b102187g

  4. Lee DH, Lee HY, Hong J-I (2002) Tetrahedron Lett 43:7273–7276. doi:10.1016/S0040-4039(02)01455-7

    Article  CAS  Google Scholar 

  5. Jiménez D, Martínez-Máñnez R, Sancenón F, Soto J (2002) Tetrahedron Lett 43:2823–2825. doi:10.1016/S0040-4039(02)00363-5

    Article  Google Scholar 

  6. Piatek P, Jurczak J (2002) Chem Commun (Camb) 20:2450–2451. doi:10.1039/b207335h

    Article  Google Scholar 

  7. Gunnlaugsson T, Davis AP, O’Brien JE, Glynn M (2002) Org Lett 4:2449–2452. doi:10.1021/ol026004l

    Article  CAS  Google Scholar 

  8. Fan A, Hong HK, Valiyaveettil S, Vittal JJ (2002) J Supramol Chem 2:247–254. doi:10.1016/S1472-7862(03)00079-0

    Article  CAS  Google Scholar 

  9. Baerrigter H, Grave L, Nissink WM, Chrisstoffels LAJ, Vander Maas JH, Verboom W, de Jong F, Reindoudt DN (1998) Org Chem 63:4174–4180. doi:10.1021/jo972127l

    Article  Google Scholar 

  10. Fan E, Van Arman SA, Kincaid D, Hamilton AD (1993) J Am Chem Soc 115:369–370. doi:10.1021/ja00054a066

    Article  CAS  Google Scholar 

  11. Lee KH, Hong J-I (2000) Tetrahedron Lett 41:6083–6087. doi:10.1016/S0040-4039(00)00966-7

    Article  CAS  Google Scholar 

  12. Wanno B, Rakrai W, Keawwangchai S, Morakot N, Morakot N, Nunthaboot N, Ruangpornvisuti V (2009) J Mol Struct THEOCHEM 902:33–40. doi:10.1016/j.theochem.2009.02.010

    Article  CAS  Google Scholar 

  13. Ruangpornvisuti V (2004) J Mol Struct THEOCHEM 686:47–55. doi:10.1016/j.theochem.2004.08.007

    Article  CAS  Google Scholar 

  14. Wanno B, Sang-aroon W, Tuntulani T, Pulpoka B, Ruangpornvisuti V (2003) J Mol Struct THEOCHEM 629:137–150. doi:10.1016/S0166-1280(03)00135-0

    Article  CAS  Google Scholar 

  15. Ruangpornvisuti V (2004) J Mol Struct THEOCHEM 683:103–113. doi:10.1016/j.theochem.2004.06.022

    Article  CAS  Google Scholar 

  16. Wanno B, Ruangpornvisuti V (2004) J Mol Struct THEOCHEM 685:57–71. doi:10.1016/j.theochem.2004.06.016

    Article  CAS  Google Scholar 

  17. Wanno B, Ruangpornvisuti V (2006) J Mol Struct 787:76–89. doi:10.1016/j.molstruc.2005.11.006

    Article  CAS  Google Scholar 

  18. Wanno B, Ruangpornvisuti V (2007) J Mol Model 13:65–77

    Google Scholar 

  19. Kondo S, Nagamine M, Yano Y (2003) Tetrahedron Lett 44:8801–8804. doi:10.1016/j.tetlet.2003.09.207

    Article  CAS  Google Scholar 

  20. Kondo S, Sato M (2006) Tetrahedron 62:4844–4850. doi:10.1016/j.tet.2006.03.002

    Article  CAS  Google Scholar 

  21. Becke AD (1988) Phys Rev A 38:3098–3100. doi:10.1103/PhysRevA.38.3098

    Article  CAS  Google Scholar 

  22. Lee C, Yang W, Parr RG (1988) Phys Rev B 37:385–789

    Google Scholar 

  23. Maseras F, Morokuma K (1995) J Comput Chem 16:1170–1179. doi:10.1002/jcc.540160911

    Article  CAS  Google Scholar 

  24. Humbel S, Sieber S, Morokuma K (1996) J Chem Phys 105:1959–1967. doi:10.1063/1.472065

    Article  CAS  Google Scholar 

  25. Dewar MJS, Reynolds CH (1986) J Comput Chem 2:140–143. doi:10.1002/jcc.540070206

    Article  Google Scholar 

  26. Stewart JJP (1989) Comput Chem 10:209–220. doi:10.1002/jcc.540100208

    Article  CAS  Google Scholar 

  27. Dapprich S, Komaromi I, Byun KS, Morokuma K, Frisch MJ (1999) J Mol Struct THEOCHEM 461:1–21. doi:10.1016/S0166-1280(98)00475-8

    Article  Google Scholar 

  28. Remko M, Walsh OA, Richards WG (2001) J Phys Chem A 105:6926–6931. doi:10.1021/jp010637k

    Article  CAS  Google Scholar 

  29. Remko M (2002) J Phys Chem A 106:5005–5010. doi:10.1021/jp020300y

    Article  CAS  Google Scholar 

  30. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR Montgomery JA Jr, Vreven T, Kudin KN, Burant JC, Millam JM, Iyengar SS, Tomasi J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Petersson GA, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Klene M, Li X, Knox JE, Hratchian HP, Cross JB, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Ayala PY, Morokuma K, Voth GA, Salvador P, Dannenberg JJ, Zakrzewski VG, Dapprich S, Daniels AD, Strain MC, Farkas O, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Ortiz JV, Cui Q, Baboul AG, Clifford S, Cioslowski J, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Challacombe M, Gill PMW, Johnson B, Chen W, Wong MW, Gonzalez C, Pople JA (2003) Gaussian 03, Revision B.03, Gaussian, Inc., Pittsburgh, PA

  31. Flükiger P, Lüthi HP, Portmann S, Weber J (2000) MOLEKEL 4.3: Swiss Center for Scientific Computing, Manno (Switzerland)

  32. Boys SF, Bernadi F (1970) Mol Phys 19:553–566. doi:10.1080/00268977000101561

    Article  CAS  Google Scholar 

  33. Mayer I, Surjan PR (1992) Chem Phys Lett 191:497–499. doi:10.1016/0009-2614(92)85415-7

    Article  CAS  Google Scholar 

  34. Turi L, Dannenberg JJ (1993) J Phys Chem 97:2488–2490. doi:10.1021/j100113a002

    Article  CAS  Google Scholar 

  35. Simon S, Duran M, Dannenberg JJ (1999) J Phys Chem A 103:1640–1643. doi:10.1021/jp9842188

    Article  CAS  Google Scholar 

  36. Hamza A, Vibok A, Halasz GJ, Mayer I (2000) J Mol Struct THEOCHEM 427:501–502

    Google Scholar 

  37. Makowski M, Raczyska ED, Chmurzyski L (2001) J Phys Chem A 105:869–874. doi:10.1021/jp002458t

    Article  CAS  Google Scholar 

  38. Long Y, Liu Y, Lei L, Nie L, Yao S (2001) Analyst (Lond) 126:1090–1094. doi:10.1039/b101478l

    Article  CAS  Google Scholar 

Download references

Acknowledgment

The authors gratefully acknowledge the Thailand Research Fund for financial support (Grant no. BRG5180016).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Vithaya Ruangpornvisuti.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Piyaauksornsak, S., Tangthongkul, T., Wanbayor, R. et al. Molecular structures of 8,8′-dithioureido-2,2′-binaphthalene derivatives and their anions recognition: an ONIOM investigation. Struct Chem 20, 767–780 (2009). https://doi.org/10.1007/s11224-009-9466-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11224-009-9466-4

Keywords

Navigation