Abstract
Glutamate synthases are complex iron–sulfur flavoproteins that participate in the essential ammonia assimilation pathway in microorganisms and plants. The recent determination of the 3-dimensional structures of the α subunit of the NADPH-dependent glutamate synthase form and of the ferredoxin-dependent enzyme of Synechocystis sp. PCC 6803 provides a framework for the interpretation of the functional properties of these enzymes, and highlights protein segments most likely involved in control and coordination of the partial catalytic activities of glutamate synthases, which take place at sites distant from each other in space. In this review, we focus on the current knowledge on structure–function relationships in glutamate synthases, and we discuss open questions on the mechanisms of control of the enzyme reaction and of electron transfer among the enzyme flavin cofactors and iron–sulfur clusters.
Similar content being viewed by others
Abbreviations
- 2-IG:
-
2-iminoglutarate
- 2-OG:
-
2-oxoglutarate
- DHODH:
-
dihydroorotate dehydrogenase
- DPD:
-
dihydropyrimidine dehydrogenase
- Em :
-
mid-point potential
- FAD:
-
flavin adenin dinucleotide
- flavin (FMN FAD)hq :
-
hydroquinone form of flavin FMN or FAD
- Flavin (FMN FAD)sq :
-
semiquinone form of flavin (FMN or FAD)
- FMN:
-
flavin mononucleotide
- GAT:
-
glutamine amidotransferase
- L-DON:
-
6-diazo-5-oxo-L-norleucine
- L-MetS:
-
L-methionine sulfone
- NAD(P)H-GltS, Fd-GltS:
-
NAD(P)H- or ferredoxin-dependent glutamate synthase
- Ntn:
-
N-terminal nucleophile
- ONL:
-
5-oxo-L-norleucine
References
MP Anderson CP Vance GH Heichel S Miller (1989) ArticleTitlePurification and characterization of NADH-glutamate synthase from alfalfa root nodules Plant Physiol 90 351–368
C Binda RT Bossi S Wakatsuki S Artz A Coda B Curti MA Vanoni A Mattevi (2000) ArticleTitleCross-talk and ammonia channeling between active centers in the unexpected domain arrangement of glutamate synthase Structure 8 1299–1308 Occurrence Handle10.1016/S0969-2126(00)00540-2 Occurrence Handle11188694
MJ Boland AG Benny (1977) ArticleTitleEnzymes of nitrogen metabolism in legume nodules Purification and properties of NADH-dependent glutamate synthase from lupin nodules. Eur J Biochem 79 355–362 Occurrence Handle10.1111/j.1432-1033.1977.tb11816.x Occurrence Handle21790
BN Chauduri SC Lange RS Myers SV Chittur VJ Davisson JL Smith (2001) ArticleTitleCrystal structure of imidazole glycerol phosphate synthase: a tunnel through a (α/β)8 barrel joins two active sites Structure (Cambridge) 9 987–997 Occurrence Handle10.1016/S0969-2126(01)00661-X
D Dobritzsch G Schneider KD Schnackerz Y Lindquist (2001) ArticleTitleCrystal structure of dihydropyrimidine dehydrogenase, a major determinant of the pharmacokinetics of the anti-cancer drug 5-fluorouracil EMBO J 20 650–660 Occurrence Handle10.1093/emboj/20.4.650 Occurrence Handle11179210
A Douangamath M Walker S Beismann-Driemeyer MC Vega-Fernandez R Sterner M Wilmanns (2002) ArticleTitleStructural evidence for ammonia tunneling across the (β/α)8 barrel of the imidazole glycerol phosphate synthase bienzyme complex Structure (Cambridge) 10 185–193 Occurrence Handle10.1016/S0969-2126(02)00702-5
G Eggink H Engel G Vriend P Terpstra B Witholt (1990) ArticleTitleRubredoxin reductase of Pseudomonas oleovorans Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints. J Mol Biol 212 135–142 Occurrence Handle10.1016/0022-2836(90)90310-I Occurrence Handle2319593
F Galvan AJ Marquez JM Vega (1984) ArticleTitlePurification and molecular properties of ferredoxin–glutamate synthase from Chlamydomonas reinhardtii Planta 162 180–187 Occurrence Handle10.1007/BF00410216
MI Garcia-Sanchez C Gotor J-P Jacquot M Stein A Suzuki JM Vega (1997) ArticleTitleCritical residues of Chlamydomonas reinhardtii ferredoxin for interaction with nitrite reductase and glutamate synthase revealed by site-directed mutagenesis Eur J Biochem 250 364–368 Occurrence Handle10.1111/j.1432-1033.1997.0364a.x Occurrence Handle9428685
MI Garcia-Sanchez A Diaz-Quintana C Gotor J-P Jacquot M DelaRosa JM Vega (2000) ArticleTitleHomology predicted structure and functional interaction of ferredoxin from the eukaryotic alga Chlamydomonas reinhardtii with nitrate reductase and glutamate synthase J Biol Inorg Chem 5 713–719 Occurrence Handle10.1007/s007750000160 Occurrence Handle11128998
WR Hagen PJ Silva MA Amorim PL Hagedoorn H Wassink H Haaker FT Robb (2000a) ArticleTitleNovel structure and redox chemistry of the prosthetic groups of the iron–sulfur flavoprotein sulfide dehydrogenase from Pyrococcus furiosus; evidence for a [2Fe-2S] cluster with Asp(Cys)3 ligands J Biol Inorg Chem 5 527–534 Occurrence Handle10.1007/s007750050013
WR Hagen MA Vanoni K Rosenbaum KS Schnackerz (2000b) ArticleTitleOn the iron-sulfur clusters in the complex redox enzyme dihydropyrimidine dehydrogenase Eur J Biochem 267 3640–3646 Occurrence Handle10.1046/j.1432-1327.2000.01393.x
M Hirasawa DB Knaff (1993) ArticleTitleThe role of lysine and arginine residues of the ferredoxin-binding site of spinach glutamamte synthase Biochim Biophys Acta 1144 85–91
M Hirasawa G Tamura (1984) ArticleTitleFlavin and iron-sulfur containing ferredoxin-linked glutamate synthase from spinach leaves J Biochem 95 983–994 Occurrence Handle6746604
M Hirasawa KT Chang DB Knaff (1991) ArticleTitleThe interaction of ferredoxin and glutamate synthase: cross-linking and immunological studies Arch Biochem Biophys 286 171–177 Occurrence Handle10.1016/0003-9861(91)90024-D Occurrence Handle1910284
M Hirasawa DE Robertson E Ameyibor MK Johnson DB Knaff (1992) ArticleTitleOxidation-reduction properties of the ferredoxin-liked glutamate synthase from spinach leaf Biochim Biophys Acta 1100 105–108 Occurrence Handle1314663
M Hirasawa JK Hurley Z Salamon G Tollin DB Knaff (1996) ArticleTitleOxidation-reduction and transient kinetic studies of spinach ferredoxin-dependent glutamate synthase Arch Biochem Biophys 330 209–215 Occurrence Handle10.1006/abbi.1996.0244 Occurrence Handle8651698
C Hirayama H Saito K Konno H Shinbo (1998) ArticleTitlePurification and characterization of NADH-dependent glutamamte synthase from the silkworm fat body (Bombyx mori) Insect Biochem Mol Biol 28 473–482 Occurrence Handle10.1016/S0965-1748(98)00019-8 Occurrence Handle9718680
DB Knaff M Hirasawa (1991) ArticleTitleFerredoxin-dependent chloroplasts enzymes Biochim Biophys Acta 1056 93–125 Occurrence Handle1671559
DB Knaff M Hirasawa E Ameyibor W Fu MK Johnson (1991) ArticleTitleSpectroscopic evidence for a [3Fe-4S] cluster in spinach glutamate synthase J Biol Chem 266 15080–15084 Occurrence Handle1651319
S Marques FJ Florencio P Candau (1992) ArticleTitlePurification and characterization of the ferredoxin-glutamate synthase from the unicellular cyanobacterium Synechococcus sp PCC6301. Eur J Biochem 206 69–77 Occurrence Handle10.1111/j.1432-1033.1992.tb16902.x Occurrence Handle1587284
AJ Marquez C Gotor LC Romero F Galvan JM Vega (1986) ArticleTitleFerredoxin-glutamate synthase from Chlamydomonas reinhardii Prosthetic groups and preliminary studies of mechanism. Int J Biochem 18 531–535 Occurrence Handle10.1016/0020-711X(86)90164-3
AJ Marquez C Avila BG Forde RM Wallsgrove (1988) ArticleTitleFerredoxin-glutamate synthase from barley leaves: rapid purification and partial characterization Planta 26 645–651
JH McKie KT Douglas (1991) ArticleTitleEvidence for gene duplication forming similar binding folds for NAD(P)H and FAD in pyridine nucleotide-dependent flavoenzymes FEBS Lett 279 5–7 Occurrence Handle10.1016/0014-5793(91)80236-V Occurrence Handle1995341
A Meister (1985) ArticleTitleGlutamate synthase from Escherichia coli, Klebsiella aerogenes and Saccharomyces cerevisiae Meth Enzymol 113 327–337 Occurrence Handle3911003
P Morandi B Valzasina C Colombo B Curti MA Vanoni (2000) ArticleTitleGlutamate synthase: identification of the NADPH binding site by site-directed mutagenesis Biochemistry 39 727–735 Occurrence Handle10.1021/bi9920329 Occurrence Handle10651638
F Navarro E Martin-Figueroa P Candau FJ Florencio (2000) ArticleTitleFerredoxin-dependent iron-sulfur flavoprotein glutamate synthase (GlsF) from the cyanobacterium Synechocystis sp PCC6803: Expression and assembly in Escherichia coli. Arch Biochem Biophys 379 267–276 Occurrence Handle10.1006/abbi.2000.1894 Occurrence Handle10898944
CL Nesbo S L’Haridon KO Stetter WF Doolittle (2001) ArticleTitlePhylogenetic analyses of two ‘archeal’ genes in Thermotoga maritima reveal multiple transfers between Archea and bacteria Mol Biol Evol 18 362–375 Occurrence Handle11230537
MV Petoukhov DI Svergun PV Konarev S Ravasio RHH Heuvel Particlevanden B Curti MA Vanoni (2003) ArticleTitleQuaternary structure of Azospirillum brasilense NADPH-dependent glutamate synthase in solution as revealed by synchrotron radiation X-ray scattering J Biol Chem 278 29933–29939 Occurrence Handle10.1074/jbc.M304147200 Occurrence Handle12777402
FM Raushel JB Thoden H Holden (2003) ArticleTitleEnzymes with molecular tunnels Acc Chem Res 36 539–548 Occurrence Handle10.1021/ar020047k Occurrence Handle12859215
S Ravasio L Dossena E Martin-Figueroa FJ Florencio A Mattevi P Morandi B Curti MA Vanoni (2002) ArticleTitleProperties of the recombinant ferredoxin-dependent glutamate synthase of Synechocystis PCC6803 Comparison with the Azospirillum brasilense NADPH-dependent enzyme and its isolated α subunit. Biochemistry 41 8120–8133 Occurrence Handle10.1021/bi020083r Occurrence Handle12069605
LJ Reitzer (1996) Ammonia assimilation and the biosynthesis of glutamine, glutamate, aspartate, asparagine, L-alanine and D-alanine FC Neidhart (Eds) Escherichia coli and Salmonella: Cellular and Molecular Biology ASM Press Washington, DC 391–407
K Rosenbaum K Jahnke B Curti WR Hagen K Schnackerz MA Vanoni (1998) ArticleTitlePorcine recombinant dihydropyrimidine dehydrogenase: comparison of the spectroscopic and catalytic properties of the wild-type and C671A mutant enzymes Biochemistry 37 17598–17609 Occurrence Handle10.1021/bi9815997 Occurrence Handle9860876
RA Sayle EJ Milner-White (1995) ArticleTitleRasMol: biomolecular graphics for all Trends Biochem Sci 20 374–376 Occurrence Handle7482707
S Schmitz F Navarro CK Kutki FJ Florencio H Boehme (1996) ArticleTitleGlutamate 94 of [2Fe-2S]–ferredoxins is important for efficient electron transfer in the 1:1 complex formed with ferredoxinglutamate synthase (GltS) from Synechocystis sp PCC 6803. Biochim Biophys Acta 1277 135–140 Occurrence Handle8950376
H Stabile B Curti MA Vanoni (2000) ArticleTitleFunctional properties of recombinant Azospirillum brasilense glutamate synthase, a complex iron-sulfur flavoprotein Eur J Biochem 267 2720–2730 Occurrence Handle10.1046/j.1432-1327.2000.01289.x Occurrence Handle10785395
HE Stutz SJ Reid (2004) ArticleTitleGltX from Clostridium saccharobutilicum NCP262: glutamate synthase or oxidoreductase Biochim Biophys Acta 1676 71–82 Occurrence Handle14732492
A Suzuki DB Knaff (2005) ArticleTitleGlutamate synthase: structural, mechanistic and regulatory properties, and role in the amino acid metabolism Photosynth Res 83 191–217 Occurrence Handle10.1007/s11120-004-3478-0
DW Tempest JL Meers CM Brown (1970) ArticleTitleSynthesis of glutamate in Aerobacter aerogenes by a hitherto unknown route Biochim J 117 405–407
SJ Temple CP Vance JS Gantt (1998) ArticleTitleGlutamate synthase and ammonia assimilation Trends Plant Sci 2 51–56 Occurrence Handle10.1016/S1360-1385(97)01159-X
RHH Heuvel Particlevanden D Ferrari RT Bossi S Ravasio B Curti MA Vanoni FJ Florencio A Mattevi (2002) ArticleTitleStructural studies on the synchronization of catalytic centers in glutamate synthase J Biol Chem 277 24579–24583 Occurrence Handle10.1074/jbc.M202541200 Occurrence Handle11967268
RHH Heuvel Particlevanden DI Svergun MV Petoukhov A Coda B Curti S Ravasio MA Vanoni A Mattevi (2003) ArticleTitleThe active conformation of glutamate synthase and its binding to ferredoxin J Mol Biol 330 113–128 Occurrence Handle10.1016/S0022-2836(03)00522-9 Occurrence Handle12818206
RHH Heuvel Particlevanden B Curti MA Vanoni A Mattevi (2004) ArticleTitleGlutamate synthase: a fascinating pathway from L-glutamine to L-glutamate Cell Mol Life Sci 61 669–681 Occurrence Handle10.1007/s00018-003-3316-0 Occurrence Handle15052410
MA Vanoni B Curti (1999) ArticleTitleGlutamate synthase: a complex iron–sulfur flavoprotein Cell Mol Life Sci 55 617–638 Occurrence Handle10.1007/s000180050319 Occurrence Handle10357231
MA Vanoni L Nuzzi M Rescigno G Zanetti B Curti (1991) ArticleTitleOn the kinetic mechanism of the reactions catalyzed by the glutamate synthase from Azospirillum brasilense Eur J Biochem 202 181–189 Occurrence Handle10.1111/j.1432-1033.1991.tb16361.x Occurrence Handle1935975
MA Vanoni DE Edmondson G Zanetti B Curti (1992) ArticleTitleCharacterization of the flavins and the iron–sulfur centers of glutamate synthase from Azospirillum brasilense by absorption, circular dichroism and electron paramagnetic resonance spectroscopies Biochemistry 31 4613–4623 Occurrence Handle10.1021/bi00134a011 Occurrence Handle1316154
MA Vanoni P Accornero G Carrera B Curti (1994) ArticleTitleThe pH dependent behaviour of catalytic activities of Azospirillum brasilense glutamate synthase and iodoacetamide modification of the enzyme provide evidence for a catalytic Cys-His ion pair Arch Biochem Biophys 309 222–230 Occurrence Handle10.1006/abbi.1994.1106 Occurrence Handle8135531
MA Vanoni E Verzotti G Zanetti B Curti (1996) ArticleTitleGlutamate synthase: properties of the recombinant β subunit Eur J Biochem 236 937–94 Occurrence Handle10.1111/j.1432-1033.1996.00937.x Occurrence Handle8665916
MA Vanoni F Fischer S Ravasio E Verzotti DE Edmondson WR Hagen G Zanetti B Curti (1998) ArticleTitleThe recombinant α subunit of glutamate synthase: spectroscopic and catalytic properties Biochemistry 37 1828–1838 Occurrence Handle10.1021/bi972342w Occurrence Handle9485308
RK Wierenga P Terpstra W Hol (1986) ArticleTitlePrediction of the occurrence of the ADP-binding βαβ-fold in proteins using an amino acid sequence fingerprint J Mol Biol 187 101–107 Occurrence Handle10.1016/0022-2836(86)90409-2 Occurrence Handle3959077
H Zalkin (1993) ArticleTitleThe amidotransferases Adv Enzymol Rel Areas Mol Biol 66 203–309
H Zalkin J Smith (1998) ArticleTitleEnzymes utilizing glutamine as the amide donor Adv Enzymol Rel Areas Mol Biol 72 87–143
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Vanoni, M.A., Dossena, L., Heuvel, R.H.H.v. et al. Structure–function studies on the complex iron–sulfur flavoprotein glutamate synthase: the key enzyme of ammonia assimilation. Photosynth Res 83, 219–238 (2005). https://doi.org/10.1007/s11120-004-2438-z
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/s11120-004-2438-z