Skip to main content
Log in

Identification and Characterisation of the α and β Subunits of Succinyl CoA Ligase of Tomato

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

Despite the central importance of the TCA cycle in plant metabolism not all of the genes encoding its constituent enzymes have been functionally identified. In yeast, the heterodimeric protein succinyl CoA ligase is encoded for by two single-copy genes. Here we report the isolation of two tomato cDNAs coding for α- and one coding for the β-subunit of succinyl CoA ligase. These three cDNAs were used to complement the respective Saccharomyces cerevisiae mutants deficient in the α- and β-subunit, demonstrating that they encode functionally active polypeptides. The genes encoding for the subunits were expressed in all tissues, but most strongly in floral and leaf tissues, with equivalent expression of the two α-subunit genes being expressed to equivalent levels in all tissues. In all instances GFP fusion expression studies confirmed an expected mitochondrial location of the proteins encoded. Following the development of a novel assay to measure succinyl CoA ligase activity, in the direction of succinate formation, the evaluation of the maximal catalytic activities of the enzyme in a range of tissues revealed that these paralleled those of mRNA levels. We also utilized this assay to perform a preliminary characterisation of the regulatory properties of the enzyme suggesting allosteric control of this enzyme which may regulate flux through the TCA cycle in a manner consistent with its position therein.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

DAF:

days after flowering

DAP:

dihydroxyacetonephosphate

EST:

expressed sequence tag

G3P:

Glycerol-3-Phosphate

G3POX:

Glycerol-3-Phophate Oxidase

G3PDH:

Glycerol-3-Phosphate Dehydrogenase

ScoAL:

Succinyl CoA ligase

TCA:

tricarboxylic acid

References

  • J.D. Bendtsen H. Nielsen G. Heijne Particlevon Brunak (2004) ArticleTitleImproved prediction of signal peptides: SignalP 3.0 J. Mol. Biol. 340 783–795 Occurrence Handle10.1016/j.jmb.2004.05.028 Occurrence Handle15223320

    Article  PubMed  Google Scholar 

  • L. M. Bender-Machado Bäuerlein F. Carrari N. Schauer A. Lytovchenko Y. Gibon A.A. Kelly M. Ehlers Loureiro B Müller-Röber L. Willmitzer A.R. Fernie (2004) ArticleTitleExpression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis Plant Mol. Biol. 55 645–662 Occurrence Handle10.1007/s11103-004-1557-4 Occurrence Handle15604707

    Article  PubMed  Google Scholar 

  • F. Carrari D. Coll-García N. Schauer A. Lytovchenko N. Palacios-Rojas I. Balbo M. A.R. Rosso And Fernie (2005) ArticleTitleDeficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth Plant Physiol. 137 70–82 Occurrence Handle10.1104/pp.104.056143 Occurrence Handle15618410

    Article  PubMed  Google Scholar 

  • F. Carrari A. Nunes-Nesi Y. Gibon A. Lytovchenko M.E. Loureiro A.R. Fernie (2003) ArticleTitleReduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato Plant Physiol. 133 1322–1335 Occurrence Handle10.1104/pp.103.026716 Occurrence Handle14551334

    Article  PubMed  Google Scholar 

  • D.B Drager A.G Debrosses-Fonrouge C. Krach A.N. Chardonnens R.C. Meyer P. Saumitou-Laprade U. Kramer (2004) ArticleTitleTwo genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels Plant J. 39 425–439 Occurrence Handle10.1111/j.1365-313X.2004.02143.x Occurrence Handle15255871

    Article  PubMed  Google Scholar 

  • O. Emanuelsson H. Nielsen S. Brunak G. Heijne Particlevon (2000) ArticleTitlePredicting subcellular localization of proteins based on their N-terminal amino acid sequence J. Mol. Biol. 300 1005–1016 Occurrence Handle10.1006/jmbi.2000.3903 Occurrence Handle10891285

    Article  PubMed  Google Scholar 

  • Y. Eshed D. Zamir (1994) ArticleTitleA genomic library of Lycopersicon pennellii in L. esculentum: A tool for fine mapping of genes Euphytica 79 175–179 Occurrence Handle10.1007/BF00022516

    Article  Google Scholar 

  • A.R. Fernie F. Carrari L. Sweetlove (2004) ArticleTitleRespiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport chain Curr. Opin. Plant Biol. 7 254–261 Occurrence Handle10.1016/j.pbi.2004.03.007 Occurrence Handle15134745

    Article  PubMed  Google Scholar 

  • M.E. Fraser M.N.G. James W.A. Bridger W.T. Wolodko (1999) ArticleTitleA detailed structural description of Escherichia coli succinyl-CoA synthetase J. Mol. Biol. 285 1633–1653 Occurrence Handle10.1006/jmbi.1998.2324 Occurrence Handle9917402

    Article  PubMed  Google Scholar 

  • Y. Gibon O.E. Blaesing J. Hannemann P. Carillo M. Höhne J.H.M. Hendricks N. Palacios J. Cross J. Selbig M. Stitt (2004) ArticleTitleA robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness Plant Cell 16 3304–3325 Occurrence Handle10.1105/tpc.104.025973 Occurrence Handle15548738

    Article  PubMed  Google Scholar 

  • Y. Gibon H. Vigeolas A. Tiessen P. Geigenberger M. Stitt (2002) ArticleTitleSensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel cycling system Plant J. 30 221–235 Occurrence Handle10.1046/j.1365-313X.2001.01278.x Occurrence Handle12000458

    Article  PubMed  Google Scholar 

  • J.D. Johnson J.G. Mehus K. Tews B.I. Milavetz D.O. Lambeth (1998) ArticleTitleGenetic evidence for the expression of ATP- and GTP-specific succinyl-CoA synthetase in multicellular eucaryotes J. Biol. Chem. 273 27580–27586 Occurrence Handle10.1074/jbc.273.42.27580 Occurrence Handle9765291

    Article  PubMed  Google Scholar 

  • M. Karimi D. Inze A. Depicker (2002) ArticleTitleGATEWAY vectors for Agrobacterium-mediated plant transformation Trends Plant Sci. 7 193–195 Occurrence Handle10.1016/S1360-1385(02)02251-3 Occurrence Handle11992820

    Article  PubMed  Google Scholar 

  • S. Kaufman S.G.A. Alivisatos (1955) ArticleTitlePurification and properties of the phosphorylating enzyme from spinach J.␣Biol. Chem. 216 141–152 Occurrence Handle13252014

    PubMed  Google Scholar 

  • S. Kumar K. Tamura I.B. Jakobsen M. Nei (2001) ArticleTitleMEGA2: molecular evolutionary genetics analysis software Bioinformatics 17 1244–1245 Occurrence Handle10.1093/bioinformatics/17.12.1244 Occurrence Handle11751241

    Article  PubMed  Google Scholar 

  • D.O. Lambeth K.N. Tews S. Adkins D. Frohlich I. Milavetz (2004) ArticleTitleExpression of two Succinyl-CoA synthetases with different nucleotide specificities in mammalian tissues J. Biol. Chem. 279 36621–36624 Occurrence Handle10.1074/jbc.M406884200 Occurrence Handle15234968

    Article  PubMed  Google Scholar 

  • A.H. Millar C.J. Leaver (2000) ArticleTitleThe cytotoxic lipid peroxidation product, 4-hydroxy-2-nonenal, specifically inhibits decarboxylating dehydrogenases in the matrix of plant mitochondria FEBS Lett. 481 117–121 Occurrence Handle10.1016/S0014-5793(00)01976-1 Occurrence Handle10996308

    Article  PubMed  Google Scholar 

  • A.H. Millar L.J. Sweetlove P. Giegé C. Leaver (2001) ArticleTitleAnalysis of the Arabidopsis mitochondrial proteome Plant Physiol. 127 1711–1727 Occurrence Handle10.1104/pp.127.4.1711 Occurrence Handle11743115

    Article  PubMed  Google Scholar 

  • A. Nunes-Nesi F. Carrari A. Lytovchenko A.M.O. Smith M.E. Loureiro R.G. Ratcliffe L. Sweetlove A.R. Fernie (2005) ArticleTitleEnhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial Malate dehydrogenase activity in transgenic tomato plants Plant Physiol. 137 611–622 Occurrence Handle10.1104/pp.104.055566 Occurrence Handle15665243

    Article  PubMed  Google Scholar 

  • H. Obiadalla-Ali A.R. Fernie J. Kossmann J.R. Lloyd (2004) ArticleTitleDevelopmental analysis of carbohydrate metabolism in tomato (Lycopersicon esculentum cv. Micro-Tom) fruits Physiol. Plant 120 196–204 Occurrence Handle10.1111/j.0031-9317.2004.0167.x Occurrence Handle15032853

    Article  PubMed  Google Scholar 

  • J.M. Palmer R.T. Wedding (1966) ArticleTitlePurification and properties of succinyl-CoA synthetase from jerusalem artichoke mitochondria Biochim. et Biophys. Acta 113 167–174 Occurrence Handle10.1016/0003-9861(66)90170-6

    Article  Google Scholar 

  • B. Przybyla-Zawislak R.A. Dennis S.O. Zakharkin M.T. McCammon (1998) ArticleTitleGenes of succinyl-CoA ligase from Saccharomyces cerevisiae Eur. J. Biochem. 258 736–743 Occurrence Handle10.1046/j.1432-1327.1998.2580736.x Occurrence Handle9874242

    Article  PubMed  Google Scholar 

  • D.G. Ryan T. Lin E. Brownie W.A. Bridger W.T. Wolodko (1997) ArticleTitleMutually exclusive splicing generates two distinct isoforms of pig heart succinyl-CoA synthetase J. Biol. Chem. 272 21151–21159 Occurrence Handle10.1074/jbc.272.34.21151 Occurrence Handle9261120

    Article  PubMed  Google Scholar 

  • N. Saitou M. Nei (1987) ArticleTitleThe neighbor-joining method: A new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 406–425 Occurrence Handle3447015

    PubMed  Google Scholar 

  • J. Sambrook E.F. Fritsch T. Maniatis (1989) Extraction, purification, and analysis of messenger RNA from eukaryotic cells N. Ford C. Nolan M. Ferguson (Eds) Molecular Cloning: A Laboratory Manual Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY 7.3–7.83

    Google Scholar 

  • N. Schauer D. Zamir A.R. Fernie (2005) ArticleTitleMetabolic profiling of leaves and fruits of wild species tomato: A survey of the Solanum lycopersicon complex J. Exp. Bot. 56 297–307 Occurrence Handle10.1093/jxb/eri057 Occurrence Handle15596477

    Article  PubMed  Google Scholar 

  • R.H. Schiestl R.D. Gietz (1989) ArticleTitleHigh efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier Curr. Genet. 16 339–346 Occurrence Handle10.1007/BF00340712 Occurrence Handle2692852

    Article  PubMed  Google Scholar 

  • I. Small N. Peeters F. Legeai C. Lurin (2004) ArticleTitlePredotar: A tool for rapidly screening proteomes for N-terminal targeting sequences Proteomics 4 1581–1590 Occurrence Handle10.1002/pmic.200300776 Occurrence Handle15174128

    Article  PubMed  Google Scholar 

  • D. Steinhauser B. Usadel A. Luedemann O. Thimm J. Kopka (2004) ArticleTitleCSB.DB: A comprehensive systems-biology database Bioinformatics 20 3647–3651 Occurrence Handle10.1093/bioinformatics/bth182 Occurrence Handle15247097

    Article  PubMed  Google Scholar 

  • L.J. Sweetlove J.L. Heazelwood V. Herald R. Holtzapffel D.A. Day C.J. Leaver A.H. Millar (2002) ArticleTitleThe impact of oxidative stress on Arabidopsis mitochondria Plant J. 32 891–904 Occurrence Handle10.1046/j.1365-313X.2002.01474.x Occurrence Handle12492832

    Article  PubMed  Google Scholar 

  • E. Urbanczyk-Wochniak A. Luedemann J. Kopka J. Selbig U. Roessner-Tunali L. Willmitzer A.R. Fernie (2003) ArticleTitleParallel analysis of a transcript and metabolic profiles:␣a new approach in systems biology EMBO Reports 4 989–993 Occurrence Handle10.1038/sj.embor.embor944 Occurrence Handle12973302

    Article  PubMed  Google Scholar 

  • R. Hoeven ParticleVan der C. Ronning J. Giovannoni G. Martin S. Tanksley (2003) ArticleTitleDeductions about the number, organization and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing Plant Cell 14 1441–1456 Occurrence Handle10.1105/tpc.010478

    Article  Google Scholar 

  • E.A. Wider H.A. Tigier (1971) ArticleTitlePorphyrin biosynthesis in soybean callus tissue. VIII. Isolation, purification and general properties of Succinyl CoA synthetase Enzymologia 41 217–231 Occurrence Handle5166363

    PubMed  Google Scholar 

  • W.T. Wolodko M.E. Fraser M.N.G. James W.A. Bridger (1994) ArticleTitleThe crystal structure of succinyl-CoA synthetase from Escherichia coli at 2.5-A resolution J. Biol. Chem. 269 10883–10894 Occurrence Handle8144675

    PubMed  Google Scholar 

  • P. Zimmermann M. Hirsch-Hoffmann L. Hennig W. Gruissem (2004) ArticleTitleGENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox Plant Physiol. 136 2621–2632 Occurrence Handle10.1104/pp.104.046367 Occurrence Handle15375207

    Article  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Alisdair R. Fernie.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Studart-Guimarães, C., Gibon, Y., Frankel, N. et al. Identification and Characterisation of the α and β Subunits of Succinyl CoA Ligase of Tomato. Plant Mol Biol 59, 781–791 (2005). https://doi.org/10.1007/s11103-005-1004-1

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11103-005-1004-1

Keywords

Navigation