Abstract
Rice provides a staple source of energy, protein and other nutrients to half of the world population. Over 90 of the rice seeds consists of starch and protein by dry weight. The quantity and property of starch and protein thus play a dominant role in the yield and quality of rice. The amylase content of starch is a determining factor in the eating and cooking quality while the amount and essential amino acids balance of storage proteins affect the nutritional quality of rice. In China, the super-hybrid rice currently under the last phase of development has a 35 yield advantage over the best inbred rice varieties. However, its grain quality needs further improvement. This study reported the expression patterns of 44 genes participating in starch, storage protein, and lysine synthesis in the developing rice grain. Field grown rice cultivar 9311, the paternal line of an elite super-hybrid rice LYP9with its draft genomic sequence released, was used as plant material. Results revealed diverse yet coordinated expression profiles of the genes involved in the three pathways which lead to the final composition and property of starch, protein and lysine that determine the quality of rice, providing useful information for rice quality improvement.
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Abbreviations
- AGPase or ADPG:
-
ADP glucose pyrophosphorylase
- AK:
-
aspartate kinase
- BAT:
-
branched-chain amino transferase
- CGS:
-
cystathionine γ-synthase
- DAF:
-
days after fertilization
- DHPS:
-
dihydrodipicolinate synthase
- GBSS I:
-
granular-bound starch synthase I
- HSD:
-
homoserine dehydrogenase
- LKR:
-
lys-2-ketoglutarate reductase
- Lys:
-
lysine
- MS:
-
methionine synthase
- SAMS:
-
S-adenosylmethionine synthase
- SBE:
-
starch branching enzyme
- SDE:
-
starch debranching enzyme
- SDH:
-
saccharopine dehydrogenase
- SDS-PAGE:
-
sodium dodecyl sulfate-polyacrylamide gel electrophoresis
- SSS:
-
soluble starch synthase
- TS:
-
threonine synthase
References
P. Arruda E.L. Kemper F. Papes A. Leite (2000) ArticleTitleRegulation of Lys catabolism in higher plants Trends in Plant Sci. 5 324–330 Occurrence Handle10.1016/S1360-1385(00)01688-5
N.M. Ayes A.M. McClung P.D. Larkin H.F.J. Bligh C.A. Jones W.D. Park (1997) ArticleTitleMicrosatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ plasm Theor. Appl. Genet. 94 773–781 Occurrence Handle10.1007/s001220050477
R.A. Azevedo P. Arruda W.L. Turner P.J. Lea (1997) ArticleTitleThe biosynthesis and metabolism of the aspartate derived amino acids in higher plants Phytochem. 46 395–419 Occurrence Handle10.1016/S0031-9422(97)00319-1
S.G. Ball j. Wal MHB Particlevan de R.G.F. Visser (1998) ArticleTitleProgress in understanding the biosynthesis of amylose Trends in Plant Sci. 3 462–467 Occurrence Handle10.1016/S1360-1385(98)01342-9
S.W.J. Bright P.R. Shewry (1983) ArticleTitleImprovement of protein quality in cereals CRC Crit. Rev. Plant Sci. 1 49–93
R.A. Burton P.E. Johnson D.M. Beckles G.B. Fincher H.L. Jenner M.J. Naldrett K. Denyer (2002) ArticleTitleCharacterization of the genes encoding the cytosolic and plastidal forms of ADP-glucose pyrophosphorylase in wheat endosperm Plant Physiol. 130 1464–1475 Occurrence Handle10.1104/pp.010363 Occurrence Handle12428011
G.B. Cagampang L.J. Cruz B.O. Juliano (1971) ArticleTitleFree amino acids in the bleeding sap and developing grain of the rice plant Cereal Chem. 48 533–539
X.L. Cai Z.Y. Wang Y.Y. Xing J.L. Zhang M.M. Hong (1998) ArticleTitleAberrant splicing of intron 1 leads to the heterogeneous 5′ UTR and decreased expression of waxygene in rice cultivars of intermediate amylose content Plant J. 14 459–465 Occurrence Handle10.1046/j.1365-313X.1998.00126.x Occurrence Handle9670561
S.B. Choi C. Wang D.G. Muench K. Ozawa V.R. Franceschi L. Wu T.W. Okita (2000) ArticleTitleMessenger RNA targeting of rice seed storage proteins to specific ER subdomains Nature 407 765–767 Occurrence Handle10.1038/35037633 Occurrence Handle11048726
Duan M.J. 2003. Profiling the expression of grain quality related genes in developing rice seeds. MPhil thesis. Department of biology, the Chinese University of Hong Kong.
S.C. Falco T. Guida M. Locke J. Mauvais C. Sandres R.T. Eard P. Webber (1995) ArticleTitleTransgenic canola and soybean seeds with increased Lys Biol/Technol. 13 577–582 Occurrence Handle10.1038/nbt0695-577
Y. Fu M.A. Ballicora J. Preiss (1998) ArticleTitleMutagenesis of the glucose-1-phosphate- binding site of potato tuber ADP-glucose pyrophosphorylase Plant Physiol. 117 989–996 Occurrence Handle10.1104/pp.117.3.989 Occurrence Handle9662541
G. Galili R. Hofgen (2002) ArticleTitleMetabolic engineering of amino acids and storage proteins in plants Metabolic Eng 4 3–11 Occurrence Handle10.1006/mben.2001.0203
S.A. Gaziola C.M.G. Teixeira J. Lugli L. Sodek R.A. Azevedo (1997) ArticleTitleThe enzymology of lysine catabolism in rice seeds: isolation, characterization and regulatory properties of a lysine 2-oxoglutarate reductase/saccharopine dehydrogenase bifunctional polypeptide Eur. J. Biochem. 247 364–371 Occurrence Handle10.1111/j.1432-1033.1997.00364.x Occurrence Handle9249048
Gomez, K.A. 1979. Effect of environment on protein and amylose content of rice. Proceedings of Workshop on Chemical Aspects of Rice Grain Quality. Intl. Rice Research Inst., Los Banos, pp. 56– 68.
M.G. James K. Denyer A.M. Myers (2003) ArticleTitleStarch synthesis in the cereal endosperm Curr. Opin. Plant Biol. 6 215–222 Occurrence Handle10.1016/S1369-5266(03)00042-6 Occurrence Handle12753970
B.O. Juliano (1971) ArticleTitleA simplified assay for milled-rice amylose Cereal Sci. Today 16 334–340
B.O. Juliano (1985) The rice caryopsis and its composition D.F. Houston (Eds) Rice: Chemistry and Technology, American Assoc Cereal Chemists Inc. St. Paul 17–74
B.O. Juliano (1993) Rice in human nutrition FAO Food and Nutrition SeriesNo 26, Publication Division FAO of the United Nations Rome 35–84
B.O. Juliano A.A. Antonio B.V. Esmama (1973) ArticleTitleEffect of protein content on the distribution and properties of rice protein J. Sci. Food Agric. 24 295–306 Occurrence Handle4696598
E.L. Kemper G. Cord Neto F. Papes K.C. Martinex Moraes A. Leite P. Arruda (1999) ArticleTitleThe role of Opaque 2 on the control of lysine degradating activities in developing maize endosperm Plant Cell 11 1981–1994 Occurrence Handle10.1105/tpc.11.10.1981 Occurrence Handle10521527
W.T. Kim X. Li T.W. Okita (1993) ArticleTitleExpression of storage protein multigene families in developing rice Plant Cell Phyisol. 34 595–603
A. Koller M.P. Washburn B.M. Lange N.L. Andon C. Deciu P.A. Haynes L. Hays D. Schieltz R. Ulaszek J. Wei D. Woltes J.R. Yates SuffixIII (2002) ArticleTitleProeomic survery of metabolic pathways in rice Proc. Natl. Acad. Sci. USA 99 11969–11974 Occurrence Handle10.1073/pnas.172183199 Occurrence Handle12163647
X.X. Li T.W. Okita (1993) ArticleTitleAccumulation of prolamins and glutelins during rice seed development: a quantitative evaluation Plant Cell Physiol. 34 385–390
C. Martin A.M. Smith (1995) ArticleTitleStarch biosynthesis Plant Cell 7 971–985 Occurrence Handle10.1105/tpc.7.7.971 Occurrence Handle7640529
K. Muntz (1998) ArticleTitleDeposition of storage protein Plant Mol. Biol. 38 77–99 Occurrence Handle10.1023/A:1006020208380 Occurrence Handle9738961
A.M. Myers M.K. Morell M.G. James S.G. Ball (2000) ArticleTitleRecent progress towards understanding biosynthesis of the amylopectin crystal Plant Physiol. 122 989–997 Occurrence Handle10.1104/pp.122.4.989 Occurrence Handle10759494
D. Normile (1999) ArticleTitleCrossing rice strains to keep Asia’s rice bowls brimming Science 283 313 Occurrence Handle10.1126/science.283.5400.313
E.P. Palmiano A.M. Almazan B.O. Juliano (1968) ArticleTitlePhysicochemical properties of protein of developing and mature rice grain Cereal Chem. 45 1–12
Y. Sano (1984) ArticleTitleDifferential regulation of waxy gene expression in rice endosperm Theor. Appl. Genet. 68 467–473 Occurrence Handle10.1007/BF00254822
O. Shaul G. Galli (1992) ArticleTitleIncreased lysine synthesis in transgenic tobacco plants expressing a bacterial dihydrodipicolinate synthase in their chloroplasts Plant J. 2 203–209 Occurrence Handle10.1111/j.1365-313X.1992.00203.x
P.R. Shewry N.G. Halford (2002) ArticleTitleCereal seed storage proteins: structures, properties and role in grain utilization J. Exp. Bot. 53 947–958 Occurrence Handle10.1093/jexbot/53.370.947 Occurrence Handle11912237
P.R. Shewry J.A. Napier A.S. Tatham (1995) ArticleTitleSeed storage protein: structure and biosynthesis Plant Cell 7 945–956 Occurrence Handle10.1105/tpc.7.7.945 Occurrence Handle7640527
M. Shibisaki S. Suzuki H. Nemoto T. Kuroume (1979) ArticleTitleAllergenicity and lymphocyte-stimulating property of rice protein J. Allergy Clin. Immunol. 64 259–265 Occurrence Handle10.1016/0091-6749(79)90141-6 Occurrence Handle479477
C.J. Slattery I.H. Havakli T.W. Okita (2000) ArticleTitleEngineering starch for increased quantity and quality Trends in Plant Sci. 5 291–298 Occurrence Handle10.1016/S1360-1385(00)01657-5
V.K. Sikka S.B. Choi I.H. Kavaklli C. Sakulsingharoj S. Gupta H. Ito T.W. Okida (2001) ArticleTitleSubcellular compartmentation and allosteric regulation of the rice endosperm SDP glucose pyrophosphorylase Plant Science 161 461–468 Occurrence Handle10.1016/S0168-9452(01)00431-9
S.S.M. Sun Q.Q. Liu (2004) ArticleTitleTransgenic approaches to improve the nutritional quality of plant proteins In Vitro Cell. Dev. Biol.-Plant 40 155–162 Occurrence Handle10.1079/IVP2003517
R. Terada H. Urawa Y. Inagaki K. Tsugane S. Lida (2002) ArticleTitleEfficient gene targeting by homologous recombination in rice Nature Biotechnol. 20 1030–1034 Occurrence Handle10.1038/nbt737
Z. Wang Y.J. Gu G. Chen F. Xiong Y.X. Li (2003) ArticleTitleRice quality and its affecting factors Mol. Plant. Breeding 1 231–241
Z.Y. Wang F.Q. Zheng G.Z. Shen J.P. Gao D.P. Snustad M.G. Li J.L. Zhang M.M. Hong (1995) ArticleTitleThe amylose content in rice endosperm is related to the post-transcription of the waxygene Plant J. 7 613–622 Occurrence Handle10.1046/j.1365-313X.1995.7040613.x Occurrence Handle7742858
InstitutionalAuthorNameWHO. (1973) Energy and protein requirements WHO Tech. Rep. Ser. 522. World Health Organization Geneva
J. Yu et al. (2002) ArticleTitleA draft sequence of the rice genome (Oryza sativaL. ssp. Indica) Science 296 79–92 Occurrence Handle10.1126/science.1068037 Occurrence Handle11935017
L.P. Yuan (1994) Increasing yield potential in rice by exploitation of heterosis S.S. Virmani (Eds) Hybrid rice: new developments and future prospects. Intl. Rice Res. Inst. Manila 1–6
Z. Zheng Y. Kawagoe S. Xiao Z. Li T.W. Okita T.L. Hau A. Lin N. Murai (1993) ArticleTitle5′ distal and proximal cis-acting regulator elements are required for developmental control of a rice seed storage protein glutelin gene Plant J. 4 357–366 Occurrence Handle10.1046/j.1365-313X.1993.04020357.x Occurrence Handle8220486
Z.K. Zhou K. Robards S. Helliwell C. Blanchard (2002) ArticleTitleComposition and functional properties of rice Intl. J. Food Technol. 37 849–868 Occurrence Handle10.1046/j.1365-2621.2002.00625.x
T. Zhu P. Budworth W.Q. Chen N. Provart H.S. Chang S. Guimil W.P. Su B. Estes G.Z. Zou X. Wang (2003) ArticleTitleTranscriptional control of nutrient partitioning during rice grain filling Plant Biotechnol. J. 1 59–70 Occurrence Handle10.1046/j.1467-7652.2003.00006.x
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Duan, M., Sun, S.S.M. Profiling the Expression of Genes Controlling Rice Grain Quality. Plant Mol Biol 59, 165–178 (2005). https://doi.org/10.1007/s11103-004-7507-3
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DOI: https://doi.org/10.1007/s11103-004-7507-3