The explanation presented above is descriptive, because it is directly based on the behaviour of the calculated fields and is therefore well suited for explaining the origin of the resonance shapes. But it does not provide a method to predict the resonance shapes, because it relies on the beforehand calculated full fields. For that, temporal coupled-mode theory can be used, which provides an abstract way of explaining and also predicting the resonance shape based on just a few input parameters.
Temporal coupled-mode theory
It is known that the resonances in transmission and reflection spectra are Fano resonances, created by the interplay of non-resonant background light with the light leaking from the resonator (Wood 1902; Fano 1941).
Temporal coupled-mode theory is able to accurately model Fano resonances of photonic crystal slabs (Fan et al. 2003; Suh et al. 2004). We will briefly discuss how the formation of the resonance peak in the orthogonal polarizer setup is explained in this framework. We follow the work of Fan et al. (2003) with slightly adapted notation.
The coupled-mode equations for one resonator with multiple ports are
$$\begin{aligned} \frac{\mathrm {d}a}{\mathrm {d}t}&= \left( \mathrm {i}\omega _0 - 1/\tau \right) a + \vec {\kappa }^{\mathsf {T}}\cdot \vec {\psi }_\text {in}\\ \vec {\psi }_\text {out}&= C \cdot \vec {\psi }_\text {in}+ a \,\vec {\kappa }, \end{aligned}$$
where a is the amplitude of the resonant mode, \(\omega _0\) is the resonance’s frequency, \(\tau \) its lifetime, \(\vec {\psi }_\text {in}\) and \(\vec {\psi }_\text {out}\) the vectors of the in- and outgoing waves’ amplitudes at all the ports, \(\vec {\kappa }\) the coupling vector for the in- and outcoupling and C is the matrix describing the direct pathways between the ports.
For external excitation, the scattering matrix S for the whole system is
$$\begin{aligned} \vec {\psi }_\text {out}= S \cdot \vec {\psi }_\text {in}= \left( C + \frac{\vec {\kappa }\cdot \vec {\kappa }^{\mathsf {T}}}{\mathrm {i}(\omega - \omega _0) + 1/\tau }\right) \cdot \vec {\psi }_\text {in}. \end{aligned}$$
In our case, the ports and waves are defined as shown in Fig. 8a. Because the TE and TM mode are orthogonal, their scattering processes are independent and we can write down the corresponding matrices \(S^{\text {TE}}\) and \(S^{\text {TM}}\) individually with \(\kappa ^{\text {TE}}\), \(\omega _0^{\text {TE}}\), \(\tau ^{\text {TE}}\) and \(\kappa ^{\text {TM}}\), \(\omega _0^{\text {TM}}\), \(\tau ^{\text {TM}}\), respectively. The matrix C is identical for both polarizations because it describes the scattering of the equivalent unstructured planar layer stack and is therefore identical for TE and TM at normal light incidence.
The transmission through the photonic crystals slab is described by the \(S_{21}\) parameters. Therefore, its Jones matrix, written in the coupled-mode-theory framework, is
$$\begin{aligned} {\mathcal {T}}_\text {PCS}= \begin{pmatrix} S_{21}^{\text {TM}}&{} 0 \\ 0 &{} S_{21}^{\text {TE}}\\ \end{pmatrix} = \begin{pmatrix} C_{21} + \frac{(\vec {\kappa }\cdot \vec {\kappa }^{\mathsf {T}})_{21}^{\text {TM}}}{\mathrm {i}(\omega - \omega _0^{\text {TM}}) + 1/\tau ^{\text {TM}}} &{} 0 \\ 0 &{} C_{21} + \frac{(\vec {\kappa }\cdot \vec {\kappa }^{\mathsf {T}})_{21}^{\text {TE}}}{\mathrm {i}(\omega - \omega _0^{\text {TE}}) + 1/\tau ^{\text {TE}}} \end{pmatrix} .\end{aligned}$$
The resulting polarisation state of the transmitted light is \(\vec {J}_\text {out}= {\mathcal {T}}_\text {Pol 2}\cdot {\mathcal {T}}_\text {PCS}\cdot \vec {J}_\text {in}\), from which we calculate the transmission:
$$\begin{aligned} T = \frac{|\vec {J}_\text {out}|^2}{|\vec {J}_\text {in}|^2} = \frac{1}{4} \left| +\frac{(\vec {\kappa }\cdot \vec {\kappa }^{\mathsf {T}})_{21}^{\text {TM}}}{\mathrm {i}(\omega - \omega _0^{\text {TM}}) + 1/\tau ^{\text {TM}}} - \frac{(\vec {\kappa }\cdot \vec {\kappa }^{\mathsf {T}})_{21}^{\text {TE}}}{\mathrm {i}(\omega - \omega _0^{\text {TE}}) + 1/\tau ^{\text {TE}}}\right| ^2 . \end{aligned}$$
Here we clearly see that for each polarization a Lorentzian with center frequency \(\omega _0\) remains after the second polarizer because the two direct pathways C cancel out. The two Lorentzians are also clearly visible in the graph of the above equation shown in Fig. 8b. This confirms that the ‘orthogonal polarizer resonance wavelength’ \(\lambda _{\text {OP}}\) is the correct wavelength that characterizes the resonantly interacting quasi-guided mode.
Another way of separating the resonant light from the background light can be performed in the time-domain. This is described in the next section.
Time-domain apodization
It has been demonstrated that in a time-domain simulation, for example with the FDTD method, the excitation of a photonic crystal slab with a broadband pulse leads to the following effect: The directly transmitted part of the light reaches the detector below the structure quickly, while another part excites the resonator and leaks slowly into the free space. This is shown in Fig. 9a. When the discrete Fourier transform (DFT) of the time-domain signal at the bottom detector is calculated, both parts of the light interfere and create the dip in the transmission spectrum at \(\lambda _{\text {GMR}}\). However, when the directly transmitted light is removed from the time-domain signal with a window function, which is also called apodization function, the interference vanishes and the light leaking from the resonator creates a Lorentzian-like peak in the spectrum (Fan and Joannopoulos 2002; Nazirizadeh 2010).
The example in Fig. 9b shows that the resonance peak obtained by time-domain apodization is not equal to the resonance peak from the orthogonal polarizer setup. Especially the intensities differ. The peak positions differ slightly (\(\varDelta \lambda = {0.7}\,\hbox {nm}\)), despite manual fine-tuning of the apodization time (both peak position and intensity depend strongly on the settings for the apodization function). Nevertheless, the time-domain analysis provides an intuitive understanding of the resonance phenomenon.