Abstract
Protein phosphorylation is a widespread modification that and plays a significant role in marine bioadhesion. The phosphorylated proteins of the barnacle Amphibalanus amphitrite can form strong ionic bonds with mineral surfaces to adapt to marine environments. The adhesion protein PC-3 in the sandcastle worm Phragmatopoma californica contains multipleserine phosphorylations. Interactions between these phosphate groups and the Mg/Ca2+ ions are less soluble at seawater pH, making the cement less fluid and more gel-like. The scallop byssus is characterized by strong wet adhesion performance and substantial byssus secretions. Thus, the excellent underwater adhesion properties of the byssus make it an ideal candidate for studies related to the development of new and versatile composite materials. However, phosphoproteins have not been identified or studied in the scallop Chlamys farreri. Phosphorylated proteins in the C. farreri byssus protein were identified by liquid chromatography–tandem mass spectrometry (LC–MS/MS) and further confirmed by phosphorylation staining and in-gel digestion coupled with mass spectrometric analysis (GeLC-MS/MS). Finally, sequence analyses and potential functional analyses were performed for these newly identified proteins. We have identified previously unreported phosphorylation sites within the C. farreri byssus protein. The results show phosphorylation modifications in all parts of the byssus structure and four foot-specific phosphorylated proteins were verified by two types of mass spectrometry and staining. The annotation of biological functions, based on sequence alignments shows that the protein 40,215.25 is homologous with TIMP-2. Similar to the previously identified TIMP-2-like protein Sbp8-1 in the scallop byssus, it contains an abundance of phosphorylated Cys, which may promote protein polymerization. We speculate that protein 40,215.25 may play an important role in cross-linking and adhesion of the scallop byssus. The phosphorylated protein we have identified in the C. farreri byssus may be related to the formation of protein cross-linkings and adhesion of the scallop foot. Our study lays the groundwork for a better understanding of the adhesion mechanism of the scallop byssus.
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Abbreviations
- PTMP1:
-
Proximal thread matrix protein1
- mefp-5:
-
Mytilus edulis foot protein 5
- TSP-1:
-
Thrombospondin-1
- LC–MS/MS:
-
Liquid chromatography–tandem mass spectrometry
- GeLC-MS/MS:
-
In-gel digestion coupled with mass spectrometric analysis
- CaM:
-
Calmodulin
- SDS-PAGE:
-
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis
References
Gorb SN (2008) Biological attachment devices: exploring nature’s diversity for biomimetics. Philos Trans Ser A Math Phys Eng Sci 366(1870):1557–1574. https://doi.org/10.1098/rsta.2007.2172
Kamino K (2008) Underwater adhesive of marine organisms as the vital link between biological science and material science. Mar Biotechnol 10(2):111–121. https://doi.org/10.1007/s10126-007-9076-3
Lee BP, Messersmith PB, Israelachvili JN, Waite JH (2011) Mussel-inspired adhesives and coatings. Annu Rev Mater Res 41:99–132. https://doi.org/10.1146/annurev-matsci-062910-100429
Cha HJ, Hwang DS, Lim S (2008) Development of bioadhesives from marine mussels. Biotechnol J 3(5):631–638. https://doi.org/10.1002/biot.200700258
Silverman HG, Roberto FF (2007) Understanding marine mussel adhesion. Mar Biotechnol 9(6):661–681. https://doi.org/10.1007/s10126-007-9053-x
Li S, Xia Z, Chen Y, Gao Y, Zhan A (2018) Byssus structure and protein composition in the highly invasive fouling mussel Limnoperna fortunei. Front Physiol 9:418. https://doi.org/10.3389/fphys.2018.00418
Waite JH, Andersen NH, Jewhurst S, Sun C (2005) Mussel adhesion: finding the tricks worth mimicking. J Adhes 81(3–4):297–317. https://doi.org/10.1080/00218460590944602
Suhre MH, Gertz M, Steegborn C, Scheibel T (2014) Structural and functional features of a collagen-binding matrix protein from the mussel byssus. Nat Commun 5:3392. https://doi.org/10.1038/ncomms4392
Kamino K, Nakano M, Kanai S (2012) Significance of the conformation of building blocks in curing of barnacle underwater adhesive. FEBS J 279(10):1750–1760. https://doi.org/10.1111/j.1742-4658.2012.08552.x
George A, Veis A (2008) Phosphorylated proteins and control over apatite nucleation, crystal growth, and inhibition. Chem Rev 108(11):4670–4693. https://doi.org/10.1021/cr0782729
Zhao H, Sun C, Stewart RJ, Waite JH (2005) Cement proteins of the tube-building polychaete Phragmatopoma californica. J Biol Chem 280(52):42938–42944. https://doi.org/10.1074/jbc.M508457200
Stewart RJ, Weaver JC, Morse DE, Waite JH (2004) The tube cement of Phragmatopoma californica: a solid foam. J Exp Biol 207(Pt 26):4727–4734. https://doi.org/10.1242/jeb.01330
Dickinson GH, Yang X, Wu F, Orihuela B, Rittschof D, Beniash E (2016) Localization of phosphoproteins within the barnacle adhesive interface. Biol Bull 230(3):233
Long JR, Dindot JL, Zebroski H, Kiihne S, Clark RH, Campbell AA, Stayton PS, Drobny GP (1998) A peptide that inhibits hydroxyapatite growth is in an extended conformation on the crystal surface. Proc Natl Acad Sci USA 95(21):12083–12087
Meisela H, Olieman C (1998) Estimation of calcium-binding constants of casein phosphopeptides by capillary zone electrophoresis. Anal Chim Acta 372:291–297
Waite JH, Qin X (2001) Polyphosphoprotein from the adhesive pads of Mytilus edulis. Biochemistry 40(9):2887–2893
Liu C, Xie L, Zhang R (2016) Ca(2+) mediates the self-assembly of the foot proteins of Pinctada fucata from the nanoscale to the microscale. Biomacromol 17(10):3347–3355. https://doi.org/10.1021/acs.biomac.6b01125
Stewart RJ, Wang CS (2010) Adaptation of caddisfly larval silks to aquatic habitats by phosphorylation of h-fibroin serines. Biomacromol 11(4):969–974. https://doi.org/10.1021/bm901426d
Addison JB, Ashton NN, Weber WS, Stewart RJ, Holland GP, Yarger JL (2013) Beta-sheet nanocrystalline domains formed from phosphorylated serine-rich motifs in caddisfly larval silk: a solid state NMR and XRD study. Biomacromol 14(4):1140–1148. https://doi.org/10.1021/bm400019d
Wang CS, Stewart RJ (2013) Multipart copolyelectrolyte adhesive of the sandcastle worm, Phragmatopoma californica (Fewkes): catechol oxidase catalyzed curing through peptidyl-DOPA. Biomacromol 14(5):1607–1617. https://doi.org/10.1021/bm400251k
Harrington MJ, Masic A, Holten-Andersen N, Waite JH, Fratzl P (2010) Iron-clad fibers: a metal-based biological strategy for hard flexible coatings. Science 328(5975):216–220. https://doi.org/10.1126/science.1181044
Miao Y, Zhang L, Sun Y, Jiao W, Li Y, Sun J, Wang Y, Wang S, Bao Z, Liu W (2015) Integration of transcriptomic and proteomic approaches provides a core set of genes for understanding of scallop attachment. Mar Biotechnol 17(5):523–532. https://doi.org/10.1007/s10126-015-9635-y
Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M (2006) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc 1(6):2856–2860. https://doi.org/10.1038/nprot.2006.468
Larsen MR, Thingholm TE, Jensen ON, Roepstorff P, Jorgensen TJ (2005) Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol Cell Proteom MCP 4(7):873–886. https://doi.org/10.1074/mcp.T500007-MCP200
Liang X, Fonnum G, Hajivandi M, Stene T, Kjus NH, Ragnhildstveit E, Amshey JW, Predki P, Pope RM (2007) Quantitative comparison of IMAC and TiO2 surfaces used in the study of regulated, dynamic protein phosphorylation. J Am Soc Mass Spectrom 18(11):1932–1944. https://doi.org/10.1016/j.jasms.2007.08.001
Wisniewski JR, Zougman A, Nagaraj N, Mann M (2009) Universal sample preparation method for proteome analysis. Nat Methods 6(5):359–362. https://doi.org/10.1038/nmeth.1322
Ashton NN, Taggart DS, Stewart RJ (2012) Silk tape nanostructure and silk gland anatomy of trichoptera. Biopolymers 97(6):432–445. https://doi.org/10.1002/bip.21720
Case ST, Powers J, Hamilton R, Burton MJ (1994) Silk and silk proteins from two aquatic insects. In: ACS symposium series, pp 80–90
Song IT, Stewart RJ (2018) Complex coacervation of Mg(ii) phospho-polymethacrylate, a synthetic analog of sandcastle worm adhesive phosphoproteins. Soft Matter 14(3):379–386. https://doi.org/10.1039/c7sm01654a
Nagase H, Woessner JF Jr (1999) Matrix metalloproteinases. J Biol Chem 274(31):21491–21494
Zhang X, Dai X, Wang L, Miao Y, Xu P, Liang P, Dong B, Bao Z, Wang S, Lyu Q, Liu W (2018) Characterization of an atypical metalloproteinase inhibitors like protein (Sbp8-1) from scallop byssus. Front Physiol 9:597. https://doi.org/10.3389/fphys.2018.00597
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This work was financially supported by the National Natural Science Foundation of China [Grant Number 81770900].
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Zhang, L., Zhang, X., Wang, Y. et al. Identification and characterization of protein phosphorylation in the soluble protein fraction of scallop (Chlamys farreri) byssus. Mol Biol Rep 46, 4943–4951 (2019). https://doi.org/10.1007/s11033-019-04945-x
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DOI: https://doi.org/10.1007/s11033-019-04945-x