Skip to main content
Log in

Novel single nucleotide polymorphisms of bovine SREBP1 gene is association with fatty acid composition and marbling score in commercial Korean cattle (Hanwoo)

  • Published:
Molecular Biology Reports Aims and scope Submit manuscript

Abstract

The sterol regulatory element binding factor 1 (SREBP1) gene plays an important role in the biosynthesis of fatty acids. The aim of this study was to investigate the association between SNPs within SREBP1 gene and fatty acid composition of muscle fat and marbling score in a commercial population of Korean cattle. Among 10 SNPs in dbSNP of bovine SREBP1 gene, we identified 7 polymorphic SNPs and 84-bp ins/del variation (SREBP1-INT5 SNP) in commercial Korean cattle (n = 513). The SREBP1-9 SNP showed a significant effect on marbling score, monounsaturated fatty acids and C18:1n-9 in the muscle fat of commercial Korean cattle. However, SREBP1-INT5 SNP showed no effect on any fatty acid composition. Therefore, two polymorphisms in SREBP1 may improve flavored beef and meat quality in commercial Korean cattle.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  1. Abe T, Saburi J, Hasebe H, Nakagawa T, Kawamura T, Saito K, Nade T, Misumi S, Okumura T, Kuchida K, Hayashi T, Nakane S, Mitsuhasi T, Nirasawa K, Sugimoto Y, Kobayashi E (2008) Bovine quantitative trait loci analysis for growth, carcass, and meat quality traits in an F2 population from a cross between Japanese Black and Limousin. J Anim Sci 86:2821–2832

    Article  PubMed  CAS  Google Scholar 

  2. Bartoň L, Kott T, Bureš D, Řehák D, Zahrádková R, Kottová B (2010) The polymorphisms of stearoyl-CoA desaturase (SCD1) and sterol regulatory element binding protein-1 (SREBP-1) genes and their association with the fatty acid profile of muscle and subcutaneous fat in Fleckvieh bulls. Meat Sci 85:15–20

    Article  PubMed  Google Scholar 

  3. Bernard L, Leroux C, Chilliard Y (2008) Expression and nutritional regulation of lipogenic genes in the ruminant lactating mammary gland. Adv Exp Med Biol 606:67–108

    Article  PubMed  CAS  Google Scholar 

  4. Brown MS, Goldstein JL (1997) The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor. Cell 89:331–340

    Article  PubMed  CAS  Google Scholar 

  5. Bhuiyan MSA, Yu SL, Jeon JT, Yoon D, Cho YM, Park EW, Kim NK, Kim KS, Lee JH (2009) DNA polymorphisms in SREBP1 and FASN genes affect fatty acid composition in Korean cattle(Hanwoo). Asian-Aust J Anim Sci 22:765–773

    CAS  Google Scholar 

  6. Chung KY, Lunt DK, Choi CB, Chae SH, Rhoades RD, Adams TH, Booren B, Smith SB (2006) Lipid characteristics of subcutaneous adipose tissue and M. longissimus thoracis of Angus and Wagyu steers fed to U.S. and Japanese endpoints. Meat Sci 73:432–441

    Article  PubMed  CAS  Google Scholar 

  7. Eberle D, Hegarty B, Bossard P, Ferre P, Foufelle F (2004) SREBP transcription factors: master regulators of lipid homeostasis. Biochimie 86:839–848

    Article  PubMed  CAS  Google Scholar 

  8. Falconer DS, Mackay TFC (1996) Introduction to quantitative genetics, 4th edn. Longman, England

    Google Scholar 

  9. Field FJ, Born E, Murthy S, Mathur SN (2002) Polyunsaturated fatty acids decrease the expression of sterol regulatory element-binding protein-1 in CaCo-2 cells : effect on fatty acid synthesis and triacylglycerol transport. Biochem J 368:855–864

    Article  PubMed  CAS  Google Scholar 

  10. Folch J, Lees M, Stanley GHS (1957) A simple method for the isolation and purification of total lipids from animal tissue. J Biol Chem 226:497–509

    PubMed  CAS  Google Scholar 

  11. Hoashi S, Ashida N, Ohsaki H, Utsugi T, Sasazaki S, Taniguchi M, Oyama K, Mukai F, Mannen H (2007) Genotype of bovine sterol regulatory element binding protein-1(SREBP-1) is associated with fatty acid composition in Japanese Black cattle. Mamm Genome 18:880–886

    Article  PubMed  CAS  Google Scholar 

  12. Hughes AL, Todd BL, Espenshade PJ (2005) SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast. Cell 120:831–842

    Article  PubMed  CAS  Google Scholar 

  13. Kim JH, Kim CH, Ko YD (2002) Influence of dietary addition of dried wormwood (Artemisia sp.) of the performance and carcass characteristics of Hanwoo steers and the nutrient digestibility of sheep. Asian-Aust J Anim Sci 15:390–395

    CAS  Google Scholar 

  14. Lee SH, Yoon DH, Hwang SH, Cheong EY, Kim OH, Lee CS (2004) Relationship between monounsaturated fatty acid composition and stearoyl-CoA desaturase mRNA level in Hanwoo liver and loin muscle. Korean J Anim Sci Technol 46:7–14

    CAS  Google Scholar 

  15. Lee SH, Cho YM, Lee SH, Kim BS, Kim NK, Choy YH, Kim KH, Yoon D, Im SK, Oh SJ, Park EW (2008) Identification of marbling-related candidate genes in M. longissimus dorsi of high- and low marbled Hanwoo (Korean Native Cattle) steers. BMB Rep 41:846–851

    Article  PubMed  CAS  Google Scholar 

  16. Mandell IB, Buchanan-Smith JG, Campbell CP (1998) Effects of forage vs grain feeding on carcass characteristics, fatty acid composition, and beef quality in Limousin-cross steers when time on feed is controlled. J Anim Sci 76:2619–2630

    PubMed  CAS  Google Scholar 

  17. Mannen H (2011) Identification and utilization of genes associated with beef qualities. Anim Sci J 82:1–7

    Article  PubMed  CAS  Google Scholar 

  18. Melton SL, Amiri M, Davis GW, Backus WR (1982) Flavor and chemical characteristics of ground beef from grass-, forage-grain- and grain-finished steers. J Anim Sci 55:77–87

    CAS  Google Scholar 

  19. Morris CA, Cullen NG, Glass BC, Hyndman DL, Manley TR, Hickey SM, McEwan JC, Pitchford WS, Bottema CD, Lee MA (2007) Fatty acid synthase effects on bovine adipose fat and milk fat. Mamm Genome 18:64–74

    Article  PubMed  CAS  Google Scholar 

  20. Mozaffarian D, Ascherio A, Hu FB, Stampfer MJ, Willett WC, Siscovick DS, Rimm EB (2005) Interplay between different polyunsaturated fatty acids and risk of coronary heart disease in man. Circulation 111:157–164

    Article  PubMed  CAS  Google Scholar 

  21. Ohsaki H, Tanaka A, Hoashi S, Sasazaki S, Oyama K, Taniguchi M, Mukai F, Mannen H (2009) Effect of SCD and SREBP genotypes on fatty acid composition in adipose tissue of Japanese Black cattle herds. Anim Sci J 80:225–232

    Article  PubMed  CAS  Google Scholar 

  22. Oh D, Lee Y, Lee C, Chung E, Yeo J (2011) Association of bovine fatty acid composition with missense necleotide polymorphism in exon7 of peroxisome proliferator-activated receptor gamma gene. Anim Genet. doi:10.1111/j.1365-2052.2011.02288.x

    PubMed  Google Scholar 

  23. Oh SY, Park SK, Kim JW, Ahn YH, Park SW, Kim KS (2003) Acetyl-CoA Carboxylase beta gene is regulated by sterol regulatory element-binding protein-1 in Liver. J Biol Chem 278:28410–28417

    Article  PubMed  CAS  Google Scholar 

  24. O’Keefe PW, Wellington GH, Mattick LR, Stouffer JR (1968) Composition of bovine muscle lipids at various carcass locations. J Food Sci 33:188–192

    Article  Google Scholar 

  25. Orellana C, Pena F, Garcia A, Perea J, Martos J, Domenech V, Acero R (2009) Carcass characteristics, fatty acid composition, and meat quality of Criollo Argentino and Braford steers raised on forage in a semi-tropical region of Argentina. Meat Sci 81:57–64

    Article  PubMed  CAS  Google Scholar 

  26. Osborne TF, Espenshade PJ (2009) Evolutionary conservation and adaptation in the mechanism that regulates SREBP action: what a long, strange tRIP it’s been. Gene Dev 23:2578–2591

    Article  PubMed  CAS  Google Scholar 

  27. Realini CE, Duckett SK, Brito GW, Dalla RM, De Mattos D (2004) Effect of pasture vs. concentrate feeding with or without antioxidants on carcass characteristics, fatty acid composition, and quality of Uruguayan beef. Meat Sci 66:567–577

    Article  PubMed  CAS  Google Scholar 

  28. Sherman EL, Nkrumah JD, Murdoch BM, Wang C, Li Z, Fu A, Moore SS (2008) Polymorphisms and haplotypes in the bovine NPY, GHR, GHRL, IGF2, UCP2, and UCP3 genes and their associations with measures of growth, performance, feed efficiency and carcass merit in beef cattle. J Anim Sci 86:1–16

    Article  PubMed  CAS  Google Scholar 

  29. Shimano H (2001) Sterol regulatory element-binding proteins (SREBPs): transcriptional regulators of lipid synthesis genes. Prog Lipid Res 40:439–452

    Article  PubMed  CAS  Google Scholar 

  30. Shin SC, Kang MJ, Chung ER (2007) Identification of a novel SNP associated with meat quality in C/EBPα gene of Korean cattle. Asian-Aust J Anim 20:466–470

    CAS  Google Scholar 

  31. Shuman S (2001) Structure, mechanism, and evolution of the mRNA capping apparatus. Prog Nucleic Acid Res Mol Biol 66:1–40

    Article  PubMed  CAS  Google Scholar 

  32. Smith SB, Gill CA, Lunt DK, Brooks MA (2009) Regulation of fat and fatty acid composition in beef cattle. Asian-Aust J Anim Sci 22:1225–1233

    CAS  Google Scholar 

  33. Smith SB, Yang A, Larsen TW, Tume RK (1998) Positional analysis of triacylglycerols from bovine adipose tissue lipids varying in degree of unsaturation. Lipids 33:197–207

    Article  PubMed  CAS  Google Scholar 

  34. Tsuji S, Itoh K, Sasazaki S, Mannen H, Oyama K, Shojo M, Mukai F (2004) An association study using AFLP markers and application to a beef cattle breeding population. Anim Genet 35:40–43

    Article  PubMed  CAS  Google Scholar 

  35. Vreeland WN, Meagher RJ, Barron AE (2002) Multiplexed, high-throughput genotyping by single-base extension and end-labeled free-solution electrophoresis. Anal Chem 74:4328–4333

    Article  PubMed  CAS  Google Scholar 

  36. Westerling DB, Hedrick HB (1979) Fatty acid composition of bovine lipids as influenced by diet, sex and anatomical location and relationship to sensory characteristics. J Anim Sci 48:1343–1348

    CAS  Google Scholar 

  37. Wood JD, Richardson RI, Nute GR, Fisher AV, Campo MM, Kasapidou E, Sheard PR, Enser M (2004) Effects of fatty acids on meat quality: a review. Meat Sci 66:21–32

    Article  PubMed  CAS  Google Scholar 

  38. Yang A, Larsen TW, Smith SB, Tume RK (1999) △9-desaturase activity in bovine subcutaneous adipose tissue of different fatty acid composition. Lipids 34:971–978

    Article  PubMed  CAS  Google Scholar 

  39. Barrett JC, Fry B, Maller J, Daly MJ (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21:263–265

    Article  PubMed  CAS  Google Scholar 

  40. Gabriel SB, Schaffner SF, Nguyen H, Moore JM, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, Liu-Cordero SN, Rotimi C, Adeyemo A, Cooper R, Ward R, Lander ES, Daly MJ, Altshuler D (2002) The structure of haplotype blocks in the human genome. Science 296:2225–2229

    Article  PubMed  CAS  Google Scholar 

  41. Matsuhashi T, Maruyama S, Uemoto Y, Kobayashi N, Mannen H, Abe T, Sakaguchi S, Kobayashi E (2011) Effects of bovine fatty acid synthase, stearoyl-coenzyme A desaturase, sterol regulatory element-binding protein 1, and growth hormone gene polymorphisms on fatty acid composition and carcass traits in Japanese Black cattle. J Anim Sci 89:12–22

    Article  PubMed  CAS  Google Scholar 

  42. Huang YZ, He H, Sun JJ, Wang J, Li ZJ, Lan XY, Lei CZ, Zhang CL, Zhang EP, Wang JQ, Chen H (2011) Haplotype combination of SREBP-1c gene sequence variants is associated with growth traits in cattle. Genome 54:507–516

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by a grant from Next-Generation BioGreen 21 Program, Rural Development Administration, Republic of Korea (Grant No. PJ008135).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jungsou Yeo.

Additional information

D. Oh authors contributed equally to this study

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 16 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lee, Y., Oh, D., Lee, J. et al. Novel single nucleotide polymorphisms of bovine SREBP1 gene is association with fatty acid composition and marbling score in commercial Korean cattle (Hanwoo). Mol Biol Rep 40, 247–254 (2013). https://doi.org/10.1007/s11033-012-2055-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11033-012-2055-4

Keywords

Navigation