Abstract
F-box proteins are a large family of eukaryotic proteins that contained a conserved motif of approximately 40 amino acids. They play an important role in the processing of degradation of cellular regulatory proteins. In this study we isolated a full-length of cDNA encoding a putative F-box protein from Citrus grandis Osbeck CV ‘Zigui shatian’ pummelo and designated as CgF-box. The cDNA sequence of CgF-box was 920 bp containing a 585 bp open reading frame encoding a precursor protein of 194 amino acid residues. The deduced protein comprised a conserved F-box domain at the position from the 40th to 84th amino acids. Cluster analysis suggested that CgF-box was more closely related to the grape F-Box protein. Southern hybridization verified CgF-box existed in the genome as multiple copies. The expression analysis revealed that the expression level of CgF-box gene remarkably increases during the flower developmental process of ‘Zigui shatian’ pummelo, such as high level of expression was noted in style, petal and anther, on the other hand low level of expression was found in ovary and leaf. For further verifying the different expression in different tissue of this gene, in situ hybridization was conducted, strong expression signal could be observed in the style, stigma and anther, low even no signal was observed in ovary. According to their findings we can conclude that CgF-box was not only involved in flower maturation, but also showed different roles in different tissue.
Similar content being viewed by others
Abbreviations
- qRT-PCR:
-
Quantitative real-time polymerase chain reaction.
- ORF:
-
Open reading frame.
References
Smalle J, Vierstra RD (2004) The ubiquitin 26S proteasome proteolytic pathway. Annu Rev Plant Biol 55:555–590
Patton E, Willems AR, Tyers M (1998) Combinatorial control in ubiquitin-dependent proteolysis: don’t Skp the F-box hypothesis. Trends Genet 14:236–243
Gagne JM, Downes BP, Shiu SH, Durski AM, Vierstra RD (2002) The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc Natl Acad Sci USA 99:11519–11524
Hershko A, Ciechanover A (1998) The ubiquitin system. Annu Rev Biochem 67:425–479
Pickart CM (2001) Mechanisms underlying ubiquitination. Annu Rev Biochem 70:503–533
Xiao W, Jang JC (2000) F-box proteins in Arabidopsis. Trends Plant Sci 5:454–457
Winston JT, Koepp DM, Zhu C, Elledge SJ, Harper JW (1999) A family of mammalian F-box proteins. Curr Biol 9:1180–1182
Zeng L, Gu SH, Li Y, Wang WH, Huang Y, Ye X, Xu J, Zhao EP, Ji CN, Ying K, Xie Y, Mao YM (2004) cDNA cloning and expression analysis of a novel human F-box domain containing gene. Mol Biol Rep 31:51–57
Kawakami K, Amsterdam A, Shimoda N, Becker T, Mugg T, Shima A, Hopkins N (2000) Proviral insertions in the zebrafish hagoromo gene, encoding an F-box/WD40-repeat protein, cause stripe pattern anomalies. Curr Biol 10:463–466
Li Y, Yang SL, Tang ZL, Cui WT, Mu YL, Chu MX, Zhao SH, Wu ZF, Li K, Peng KM (2010) Expression and SNP association analysis of porcine FBXL4 gene. Mol Biol Rep 37:579–585
Wang ZW, Li XY, Tang ZL, Yang SL, Ying ZZ, Fu T, Fan B, Mu YL, Ao H, Li K (2010) Molecular characterization and association analysis of FBXO40 with partial hematological indexes in pig. Mol Biol Rep 37(7):3393–3400
Bai C, Richman R, Elledge SJ (1994) Human cyclin F. EMBO J 13:6087–6098
Kipreos ET, Pagano M (2000) The F-box protein family. Genome Biol 1: Rev 3002
Xu GX, Ma H, Nei M, Kong HZ (2009) Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proc Natl Acad Sci USA 106:835–840
Coates JC, Laplaze L, Haseloff J (2006) Armadillo-related proteins promote lateral root development in Arabidopsis. Proc Natl Acad Sci USA 103:1621–1626
Gray WM, Kepinski S, Rouse D, Leyser O, Estelle M (2001) Auxin regulates SCF (TIR1)-dependent degradation of AUX/IAA proteins. Nature 414:271–276
Gao Y, Zhao Y, Li TT, Liu Y, Ren CX, Wang ML (2010) Molecular cloning and expression analysis of an F-box protein gene responsive to plant hormones in Brassica napus. Mol Biol Rep 37:1037–1044
Qiao H, Chang KN, Yazaki J, Ecker JR (2009) Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis. Genes Dev 23(4):512–521
Woo HR, Chung KM, Park JH, Oh SA, Ahn T, Hong SH, Jang SK, Nam HG (2001) ORE9, an F-box protein that regulates leaf senescence in Arabidopsis. Plant Cell 13:1779–1790
Luo Y, Lv GL, Wu WT, Chen SN, Cheng ZQ (2010) Analysis of genome expression in the response of Oryza granulata to Xanthomonas oryzae pv oryzae. Mol Biol Rep 37:875–892
Samach A, Klenz JE, Kohalmi SE, Risseeuw E, Haughn GW, Crosby WL (1999) The UNUSUAL FLORAL ORGANS gene of Arabidopsis thaliana is an F-box protein required for normal patterning and growth in the floral meristem. Plant J 20:433–445
Ingram GC, Doyle S, Carpenter R, Schultz EA, Simon R, Coen ES (1997) Dual role for FIMBRIATA in regulating floral homeotic genes and cell division in Antirrhinum. EMBO J 16:6521–6534
Ni W, Xie D, Hobbie L, Feng B, Zhao D, Akkara J, Ma H (2004) Regulation of flower development in Arabidopsis by SCF complexes. Plant Physiol 134:1574–1585
Ushijima K, Sassa H, Dandekar AM, Gradziel TM, Tao R, Hirano H (2003) Structural and transcriptional analysis of the self incompatibility locus of almond: identification of a pollen-expressed F-box gene with haplotype-specific polymorphism. Plant Cell 15(3):771–781
Yamane H, Ikeda K, Ushijima K, Sassa H, Tao R (2003) Pollen-expressed gene for a novel protein with an F-box motif that very tightly linked to a gene for S-RNase in two species of cherry, Prunus cerasus and P. avium. Plant Cell Physiol 44(7):764–769
Sijacic P, Wang X, Skirpan AL, Wang Y, Dowd PE, McCubbin AG, Huang S, Kao TH (2004) Identification of the pollen determinant of S-RNase-mediated self-incompatibility. Nature 429(6989):302–305
Qiao H, Wang H, Zhao L, Zhou J, Huang J, Zhang Y, Xue Y (2004) The F-box protein AhSLF-S2 physically interacts with S-RNases that may be inhibited by the ubiquitin/26S proteasome pathway of protein degradation during compatible pollination in Antirrhinum. Plant Cell 16(3):582–595
Qiao H, Wang F, Zhao L, Zhou J, Lai Z, Zhang Y, Robbins TP, Xue Y (2004) The F-box protein AhSLF-S2 controls the pollen function of S-RNase-based self-incompatibility. Plant Cell 16(9):2307–2322
Masashi Y, Tatsuya K, Shigeto T (2006) Self- and cross-incompatibility of various citrus accessions. J Jpn Soc Hortic Sci 75(5):372–378
Chai LJ, Ge XX, Biswas MK, Xu Q, Deng XX (2010) Self-sterility in the mutant ‘Zigui shatian’ pummelo (Citrus grandis Osbeck) is due to abnormal post-zygotic embryo development and not self-incompatibility. Plant Cell, Tissue Organ Cult. doi: 10.1007/s11240-010-9793-6
Liu YZ, Liu Q, Tao NG, Deng XX (2006) Efficient isolation of RNA from fruit peel and pulp of ripening navel orange (Citrus sinesis Osbeck). J Huazhong Agric Univ 25(3):300–304
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
Cheng YJ, Guo WW, Yi HL, Pang XM, Deng XX (2003) An efficient protocol for genomic DNA extraction from Citrus species. Plant Mol Biol Rep 21:177a–177g
Hu ZY, Tong Z, Wei H, Yi HL, Deng XX (2006) Mitochondrial gene expression in stamens is differentially regulated during male gametogenesis in Citrus unshiu. J Hortic Sci Biotechnol 81:565–569
Jin J, Cardozo T, Lovering RC, Elledge SJ, Pagano M, Harper JW (2004) Systematic analysis and nomenclature of mammalian F-box proteins. Genes Dev 18:2573–2580
Kuroda H, Takahashi N, Shimada H, Seki M, Shinozaki K, Matsui M (2002) Classification and expression analysis of Arabidopsis F-box containing protein genes. Plant Cell Physiol 43:1073–1085
Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice: genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol 143:1467–1483
Chai LJ, Biswas MK, Ge XX, Deng XX (2010) Isolation, characterization, and expression analysis of an SKP1-like gene from ‘Shatian’ Pummelo (Citrus grandis Osbeck). Plant Mol Biol Rep 28:569–577
Lechner E, Achard P, Vansiri A, Potuschak T, Genschik P (2006) F-box proteins everywhere. Curr Opin Plant Biol 9:631–638
Xue MN, Chen TT, Yang XH (1995) Observations on self and cross-compatibility in Shatinyu. Acta Hortic Sin 22(2):127–132
Sassa H, Nishio T, Kowyama Y, Hirano H, Koba T, Ikehashi H (1996) Self-incompatibility (S) alleles of the Rosaceae encodes members of a distinct class of the T2/S ribonuclease super family. Mol Gen Genet 50:547–557
Wang Y, Wang X, Skirpan AL, Kao TH (2003) S-RNase mediated self-incompatibility. J Exp Bot 54:115–122
Chai LJ, Ge XX, Xu Q, Deng XX (2010) CgSL2, an S-like RNase gene in ‘Zigui shatian’ pummelo (Citrus grandis Osbeck), is involved in ovary senescence. Mol Biol Rep. doi: 10.1007/s11033-010-0070-x
Kao TH, Tsukamoto T (2004) The molecular and genetic bases of S-RNase-based self-incompatibility. Plant Cell 16:S72–S83
Acknowledgments
This research was financially supported by the National Basic Research Program of China (2011CB100600) and the National Natural Science Foundation of China (Nos. 30830078, 30921002).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Chai, L., Ge, X., Biswas, M.K. et al. Molecular analysis and expression of a floral organ-relative F-box gene isolated from ‘Zigui shatian’ pummelo (Citrus grandis Osbeck). Mol Biol Rep 38, 4429–4436 (2011). https://doi.org/10.1007/s11033-010-0571-7
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11033-010-0571-7