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Mapping of flag smut resistance in common wheat

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Abstract

Flag smut, caused by Urocystis agropyri, has been a problem in wheat production, but its incidence has declined with the use of resistant varieties and seed dressing. Diamondbird, an Australian wheat cultivar that carries high levels of resistance to flag smut, was crossed with susceptible Chinese landrace TH3929 and a doubled haploid (DH) population was developed. A linkage map comprising 386 markers was used for detection of genomic regions controlling flag smut resistance. Composite interval mapping identified five quantitative trait loci (QTL) with significant effects for flag smut resistance. QTL QFs.sun-3AL, QFs.sun-6AS, QFs.sun-1BL and QFs.sun-5BS were contributed by Diamondbird. Although TH3929 was susceptible, it contributed a minor QTL QFs.sun-3AS. QTL QFs.sun-3AL and QFs.sun-6AS were detected in both seasons and each explained more than 17 % of the variation in flag smut response. Other QTL QFs.sun-3AS, QFs.sun-1BL and QFs.sun-5BS explained 5–10 % of the phenotypic variation. DH lines that showed low flag smut levels carried combinations of three or more QTL. This is the first report on chromosomal location of flag smut resistance in a modern common wheat cultivar.

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References

  • Akbari M, Wenzl P, Caig V, Carling J, Xia L, Yang S, Uszynski G, Mohler V, Lehmensiek A, Kuchel H, Hayden M, Howes N, Sharp P, Vaughan P, Rathmell B, Huttner E, Kilian A (2006) Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theor Appl Genet 13:1409–1420

    Article  Google Scholar 

  • Allan R (1976) Flag smut reactions in wheat: its genetic control and association with other characters. Crop Sci 16:685–687

    Article  Google Scholar 

  • Ballyantyne B (1996) Flag smut. In: Wilcoxson RD, Saari EF (eds) Bunt and smut diseases of wheat: concepts and methods of disease management. Mexico, CIMMYT, pp 48–56

    Google Scholar 

  • Bhavani S, Bansal UK, Hare R, Bariana HS (2008) Mapping of stem rust resistance genes in durum cultivar Arrivato. Int J Plant Breed 2:23–26

    Google Scholar 

  • Don R, Cox P, Wainwright B, Baker K, Mattick J (1991) “Touchdown” PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res 19:4008

    Article  PubMed  CAS  Google Scholar 

  • Faris J, Haen K, Gill B (2000) Saturation mapping of a gene-rich recombination hot spot region in wheat. Genetics 154:823–835

    PubMed  CAS  Google Scholar 

  • Gill K, Gill B, Endot T, Boyko E (1996) Identification and high-density mapping of gene-rich regions in chromosome Group 5 of wheat. Genetics 143:1001–1012

    PubMed  CAS  Google Scholar 

  • Goel R (1991) Genetics of durable resistance to flag smut in some of the wheat lines. SABRO 23:95–101

    Google Scholar 

  • Goel R, Gupta A (1990) Reaction of some wheat cultivars and lines to flag smut. Indian J Genet 50:185–188

    Google Scholar 

  • Hayden M, Stephenson P, Logojan A, Khatkar D, Rogers C, Elsden J, Koebner R, Snape J, Sharp P (2006) Development and genetic mapping of sequence-tagged microsatellites (STMs) in bread wheat (Triticum aestivum L.). Theor Appl Genet 113:1271–1281

    Article  PubMed  CAS  Google Scholar 

  • Helm J, Allan R (1971) Inheritance of reaction to flag smut in wheat (Triticum aestivum). Crop Sci 11:177–180

    Article  Google Scholar 

  • Kosambi D (1944) The estimation of map distances from recombination values. Ann Eugen 12:172–175

    Google Scholar 

  • Kulwal P, Kumar N, Gaur A, Khurana P, Khurana J, Tyagi A, Balyan H, Gupta P (2005) Mapping of a major QTL for pre-harvest sprouting tolerance on chromosome 3A in bread wheat. Theor Appl Genet 111:1052–1059

    Article  PubMed  CAS  Google Scholar 

  • Lagudah E, McFadden H, Singh R, Huerta-Espino J, Bariana H, Spielmeyer W (2006) Molecular genetic characterization of the Lr34/Yr18 slow rusting resistance gene region in wheat. Theor Appl Genet 114:21–30

    Article  PubMed  CAS  Google Scholar 

  • Lander E, Green P, Abrahamson J, Barlow A, Daly M, Lincon S, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181

    Article  PubMed  CAS  Google Scholar 

  • Laurie D, Bennett M (1986) Wheat × maize hybridization. Can J Genet Cytol 28:313–316

    Google Scholar 

  • Lillemo M, Asalf B, Singh R, Huerta-Espino J, Chen X, He Z, Bjornstad A (2008) The adult plant rust resistance loci Lr34/Yr18 and Lr46/Yr29 are important determinants of partial resistance to powdery mildew in bread wheat line Saar. Theor Appl Genet 116:1155–1166

    Article  PubMed  CAS  Google Scholar 

  • Lin F, Chen X (2009) Quantitative trait loci for non-race-specific, high-temperature adult-plant resistance to stripe rust in wheat cultivar express. Theor Appl Genet 118:631–642

    Article  PubMed  CAS  Google Scholar 

  • Mago R, Brown-Guedira G, Dreisigacker S, Breen J, Jin Y, Singh R, Appels R, Lagudah ES, Ellis J, Spielmeyer W (2011) An accurate DNA marker assay for stem rust resistance gene Sr2 in wheat. Theor Appl Genet 122:735–744

    Article  PubMed  CAS  Google Scholar 

  • Manly K, Cudmore R, Meer J (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930–932

    Article  PubMed  CAS  Google Scholar 

  • McIntosh R (1968) Genetic and cytogenetic studies on resistance to flag smut in wheat. PhD Thesis, University of Sydney, NSW, Australia

  • Messmer M, Keller M, Zanetti S, Keller B (1999) Genetic linkage map of a wheat X spelt cross. Theor Appl Genet 98:1163–1170

    Article  CAS  Google Scholar 

  • Mori M, Uchino N, Chono M, Kato K, Miura H (2005) Mapping QTLs for grain dormancy on wheat chromosome 3A and the group 4 chromosomes, and their combined effect. Theor Appl Genet 110:1315–1323

    Article  PubMed  CAS  Google Scholar 

  • Murray G, Brennan J (2009) The current and potential costs from diseases of wheat in Australia. Grains Research and Development Corporation, pp 1–70. http://www.grdc.com.au/uploads/documents/GRDC_WheatDiseaseLoss_Report_final.pdf

  • Murray T, Parry D, Cattlin N (1998a) Bunts/smuts—diseases of small grain cereal crops. Iowa State University Press, Ames, pp 9–12

    Google Scholar 

  • Murray T, Parry D, Cattlin N (1998b) Flag smut—diseases of small grain cereal crops. Iowa State University Press, Ames, pp 55–57

    Google Scholar 

  • Padwick GW (1948) Plant protection and food crops of India I. Plant pests and diseases of rice, wheat, sorghum and gram. Emp J Exp Agr 16:55–64

    Google Scholar 

  • Peleg Z, Saranga Y, Suprunova T, Ronin Y, Röder M, Kilian A, Korol A, Fahima T (2008) High-density genetic map of durum wheat wild emmer wheat based on SSR and DArT markers. Theor Appl Genet 117:103–115

    Article  PubMed  CAS  Google Scholar 

  • Purdy L (1965) Flag smut of wheat. Bot Rev 31:56–606

    Article  Google Scholar 

  • Purdy L, Allan R (1967) Heritability of flag smut resistance in three wheat crosses. Phytopathology 57:324–325

    Google Scholar 

  • Purdy L, Allan R, Holton C (1964) Reactions of wheats to flag smut in the Pacific Northwest. Plant Dis Rep 48:895–899

    Google Scholar 

  • Semagn K, Bjornstad A, Skinnes H, Moraoy A, Tarkegne Y, William M (2006) Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population. Genome 49:545–555

    Article  PubMed  CAS  Google Scholar 

  • Shen T (1934) The inheritance of resistance to flag smut resistance ten wheat crosses. Bull Nanking Coll Agric For 17(NS):16

    Google Scholar 

  • Shen T, Tai S, Chang S (1938) The transgressive inheritance of reaction to flag smut, earliness of heading, partial sterility and stiffness of glumes in a varietal cross of wheat. J Am Soc Agron 30:68–79

    Article  Google Scholar 

  • Shen X, Ittu M, Ohm H (2003) Quantitative trait loci conditioning resistance to Fusarium head blight in wheat line F201R. Crop Sci 43:850–857

    Article  CAS  Google Scholar 

  • Singh R, Ma H, Rajaram S (1995) Genetic analysis of resistance to scab in spring wheat cultivar Frontana. Plant Dis 79:238–240

    Article  Google Scholar 

  • Tadesse W, Schmolke M, Hsam S, Mohler V, Wenzel G, Zeller F (2010) Chromosomal location and molecular mapping of a tan spot resistance gene in the winter wheat cultivar Red Chief. J Appl Genet 51:235–242

    Article  PubMed  CAS  Google Scholar 

  • Tisdale W, Dungan G, Leighty C (1923) Flag smut of wheat with special reference to varietal resistance. No 242, Urbana, Illinois, pp 510–538

  • Toor A (2011) Genetic analysis of flag smut and rust resistance in wheat. Ph.D. Thesis, the University of Sydney, Australia

  • Toor AK, Bariana HS (2012) Flag smut of wheat—pathogen biology and host resistance. In: Sharma I (ed) Disease resistance in wheat, CABI plant protection series. CABI, UK, pp 295–303

    Chapter  Google Scholar 

  • Wang S, Basten C, Zeng Z (2007) Windows QTL cartographer 2.5. Department of Statistics, North Carolina State, University, Raleigh, NC

  • Young N (1996) QTL mapping and quantitative disease resistance in plants. Ann Rev Phytopathol 34:479–501

    Article  CAS  Google Scholar 

  • Yu T, Hwang L, Tsiang C (1936) Varietal resistance and susceptibility to flag smut (Urocystis agropyri Koern) III. Physiologic specialization in Urocystis agropyri Koern. Bull Chin Bot Soc 2:111–113

    Google Scholar 

Download references

Acknowledgments

The first author acknowledges the University of a Sydney for the award of a University of Sydney International Scholarship (USydIS) and provision of research facilities. We thank Prof. R.A. McIntosh for provision of mapping population, advice and encouragement. The positions of Associate Professor Bariana and Dr Bansal are supported by GRDC Australia.

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Correspondence to Harbans Bariana.

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Toor, A., Bansal, U. & Bariana, H. Mapping of flag smut resistance in common wheat. Mol Breeding 32, 699–707 (2013). https://doi.org/10.1007/s11032-013-9903-3

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