Abstract
Oxidized low-density lipoprotein (oxLDL) plays a central role in the pathogenesis of atherosclerosis, in part via an effect to promote endothelial dysfunction. In the present study, we evaluated the expression profiles of long non-coding RNAs (lncRNAs) and protein-coding mRNAs in endothelial cells following oxLDL stimulation. LncRNAs and mRNAs from human umbilical vein endothelial cells (HUVECs) were profiled with the Arraystar Human lncRNA Expression Microarray V3.0 following 24 h of oxLDL treatment (100 µg/mL). Of the 30,584 lncRNAs screened, 923 were significantly up-regulated and 975 significantly down-regulated (P < 0.05) in response to oxLDL exposure. In the same HUVEC samples, 518 of the 26,106 mRNAs screened were up-regulated and 572 were down-regulated. Of these differentially expressed lncRNAs, CLDN10-AS1 and CTC-459I6.1 were the most up-regulated (~87-fold) and down-regulated (~28-fold), respectively. Bioinformatic assignment of the differentially regulated genes into functional groups indicated that many are involved in signaling pathways among which are the cytokine receptor, chemokine, TNF, MAPK and Ras signaling pathways, olfactory transduction, and vascular smooth muscle cell function. This is the first report profiling oxLDL-mediated changes in lncRNA and mRNA expression in human endothelial cells. The novel targets revealed substantially extend the list of potential candidate genes involved in atherogenesis.
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Abbreviations
- ANRIL:
-
Antisense non-coding RNA in the INK4
- CVD:
-
Cardiovascular disease
- DE:
-
Differentially expressed
- ENCODE:
-
Encyclopedia of DNA Elements
- GO:
-
Gene ontology
- HDL:
-
High-density lipoprotein
- HLA-DPB1:
-
Major Histocompatibility Complex, Class II, DP Beta-1
- HUVECs:
-
Human umbilical vein endothelial cells
- KEGG:
-
Kyoto Encyclopedia of Genes and Genomes
- lncRNA:
-
Long non-coding RNAs
- MIAT:
-
Myocardial infarction-associated transcript
- miRNA:
-
MicroRNA
- ncRNA:
-
Non-coding RNAs
- NO:
-
Nitric oxide
- NQO1:
-
NAD(P)H dehydrogenase quinone 1
- O2 − :
-
Oxygen radical
- oxLDL:
-
Oxidized low-density lipoprotein
- piRNAs:
-
PIWI-interacting RNAs
- ROS:
-
Reactive oxygen species
- SMC:
-
Smooth muscle cell
- snoRNAs:
-
Small nucleolar RNAs
- t-UCRs:
-
Transcribed ultra-conserved regions
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Acknowledgements
This work was supported by in part by grants from the Canadian Institutes of Health Research and Heart and Stroke Foundation of Canada to S. Verma. S. Verma is the Canada Research Chair in Atherosclerosis at the University of Toronto.
Authors’ contributions
KKS and SV designed the studies and the experiments. KKS, PNM, YP, AQ, and VG conducted the experiments. KKS drafted the manuscript. KKS, AQ, HT, MAO, and SV interpreted the data and critically edited the manuscript. All authors read and approved the final manuscript.
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Singh, K.K., Matkar, P.N., Pan, Y. et al. Endothelial long non-coding RNAs regulated by oxidized LDL. Mol Cell Biochem 431, 139–149 (2017). https://doi.org/10.1007/s11010-017-2984-2
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DOI: https://doi.org/10.1007/s11010-017-2984-2