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Separation of long-and short-range interactions in calculations of energy distribution of ions in membrane channels

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Abstract

A calculation approach is proposed that is based on the separation of long-and short-range interactions. It allows adequate energy distribution of ions in axially symmetric ion channels to be obtained. The present approach has been tested on a bacterial potassium channel, for which the energy distribution of ions was calculated and its potassium selectivity was explained quantitatively.

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References

  1. V. A. Tverdislov, A. N. Tikhonov, and L. V. Yakovenko, Physical Mechanisms of Functioning of Biological Membranes, [in Russian], Izd. Mosk. Gos. Univ., Moscow (1987).

    Google Scholar 

  2. W. Nonner, D. P. Chen, and D. Eisenberg, J. Gen. Physiol., 113, 773–782 (1999).

    Article  CAS  Google Scholar 

  3. E. Von Kitzing, ibid., 114, 593–595.

  4. A. V. Dmitriev and V. A. Tverdislov, Biofiz., 49, 506–510 (2004).

    CAS  Google Scholar 

  5. A. V. Dmitriev, P. P. Isaev, G. A. Isaeva, et al., ibid., 47, 864–868 (2002).

    CAS  Google Scholar 

  6. D. A. Doyle, et al., Science., 280, 69–77 (1998).

    Article  CAS  Google Scholar 

  7. L. J. Mullins, Biophys. J., 15, 921–931 (1975).

    CAS  Google Scholar 

  8. V. I. Minkin, B. Ya. Simkin, and R. M. Minyaev, Theory of Molecule Structure (electron shells), [in Russian], Vysshaya Shkola, Moscow (1979).

    Google Scholar 

  9. W. D. Cornell, et al., J. Am. Chem. Soc., 117, 5179–5197 (1995).

    Article  CAS  Google Scholar 

  10. W. F. van Gunsteren, P. K. Weiner, and A. J. Wilkinson (eds.), Computer Simulation of Biomolecular Systems, Vol. 3, Plenum Press, New York (1997), pp. 83–96.

    Google Scholar 

  11. S. S. Batsanov, Structural Chemistry, [in Russian], Izd. Dialog-MGU, Moscow (2000).

    Google Scholar 

  12. R. B. Gennis, Biomembranes. Molecular Structure and Functions, Springer-Verlag, New York (1989).

    Google Scholar 

  13. A. Syganow and E. Kitzing, Biophys. J., 76, 768–771 (1999).

    Article  CAS  Google Scholar 

  14. A. N. Tikhonov, A. F. Pogrebnaya, and Yu. M. Romanovskii, Biofiz., 48, 1052–1070 (2003).

    CAS  Google Scholar 

  15. D. J. Aidley and P. R. Stanfield, Ion Channels. Molecule in Action, Cambridge University Press, Great Britain (1996).

    Google Scholar 

  16. G. Moy, B. Corry, S. Kuyucak, and S. H. Chung, Biophys. J., 78, 2349–2363 (2000).

    CAS  Google Scholar 

  17. M. Kurnikova, R. Coalson, P. Graf, and H. Nitzam, ibid., 76, 642–656 (1999).

    CAS  Google Scholar 

  18. A. Cardenas, R. Coalson, and M. Kurnikova, ibid., 79, 80–93 (2000).

    CAS  Google Scholar 

  19. S. Kuyucak, M. Hoyels, S. H. Chung, ibid., 74, 22–36 (1998).

    CAS  Google Scholar 

  20. A. V. Dmitriev and V. A. Tverdislov, On the Possibility of Existence and Structural Features of Mirror Antipode for the Natural Cell, [in Russian], Preprint of Physical Faculty of M. V. Lomonosov State Univ., Moscow (2005).

    Google Scholar 

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Original Russian Text Copyright © 2006 by A. V. Dmitriev, P. P. Isaev, and V. A. Tverdislov

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Translated from Zhurnal Strukturnoi Khimii, Vol. 47, No. 2, pp. 249–253, March–April, 2006.

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Dmitriev, A.V., Isaev, P.P. & Tverdislov, V.A. Separation of long-and short-range interactions in calculations of energy distribution of ions in membrane channels. J Struct Chem 47, 241–246 (2006). https://doi.org/10.1007/s10947-006-0292-x

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  • DOI: https://doi.org/10.1007/s10947-006-0292-x

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