Clinical studies
This population PK (popPK) analysis of evolocumab pooled data from 11 clinical studies, the relevant characteristics of which are summarized in Table 1. Additional details of the clinical trials are reported elsewhere [11, 13,14,15,16,17,18,19,20,21,22,23].
Table 1 Summary of the studies and data included in the analyses
Bioanalytical assay
For all clinical studies used in this analysis, unbound evolocumab concentrations in human serum were determined using a validated enzyme-linked immunosorbent assay. Microplate wells coated with a mouse anti-evolocumab monoclonal antibody (clone no. 1.18.1, Amgen Inc.) were used to capture evolocumab from serum. The capture reagent incubation wells were then washed, and standards, quality controls, and samples were pipetted into the wells. Unbound materials were removed by a subsequent wash step. Horseradish peroxidase–labeled mouse anti-evolocumab monoclonal antibody (clone no. 1.46, Amgen Inc.) was added to the wells for detection of the captured evolocumab. After another wash step, a tetramethylbenzidine substrate solution reacted with the peroxide and produced a colorimetric signal that was proportional to the amount of evolocumab bound by the capture reagent. The color development was stopped by addition of H2SO4, and the optical density signal was measured at 450 nm with reference to 650 nm. The lower limit of quantification (LLOQ) and upper limit of quantification for the assay was 0.8 and 10 µg/mL, respectively.
Software
PopPK and PK/PD data were analyzed using the nonlinear, mixed-effects modeling software program NONMEM (version 7.2) [24] on the NONMEM High Performance Cluster (NONMEM HPC), which is a suite of scripts, procedures, and services that supports popPK and PK/PD analyses. It consists of NONMEM 7.2, NMQual 8.2.7, Subversion 1.6.11, MPICH 3.0.4, Grid Engine 2011.11p1, Intel FORTRAN 13.0.1, R 3.0.1, RStudio 0.97.551, and Perl 5.18.1 (1800). NONMEM jobs in the NONMEM HPC system are run on a Grid Engine moderated pseudo-cluster of Intel® Xeon® CPU X5660 @ 2.80 GHz processors under Red Hat Enterprise Linux 5.8 (Tikanga). Graphical and all other statistical analyses were performed using either TIBCO Spotfire S+ for Windows version 8.2 (TIBCO Software Inc., Palo Alto, CA) or R software 2.10.1 or higher (The R Foundation for Statistical Computing).
PopPK analysis
Phase 1 and 2 data were used to develop the initial popPK model. A 1–compartment open model with linear and nonlinear elimination pathways from the central compartment (Fig. 1) was parameterized by volume of distribution (V) in the central compartment, linear clearance (CL), and nonlinear clearance (Vmax, km), and was selected based on preliminary analyses and visualizations of the data [25]. Attempts were made to fit a target-mediated drug disposition model [12] using the quasi steady-state (QSS) approximation of the full target-mediated drug disposition (TMDD) model estimating steady state constant (kss) from the data, but results showed that the model was overparameterized given the sparseness of PK data available across subjects (Table 1).
Absorption after SC administration was described by a first-order process from the depot compartment to the central compartment. Bioavailability (F) was used to scale IV to SC dosing. Estimates of the absorption rate constant (ka) and F were fixed from the phase 1a, densely sampled, single-dose data for subsequent modeling activities. In the population PK analysis, we used the Michaelis–Menten (MM) approximation of the full TMDD model. The km value was estimated from phase 1 and 2 data where a broad dose range was studied (70, 105, and 140 mg every 2 weeks [Q2W] and 280, 350, and 420 mg once monthly [QM]), enabling a robust estimate of km. Phase 3 studies evaluated optimal doses selected from phase 2 (140 mg Q2W and 420 mg QM). The inclusion of 2 doses required fixing km because the extent of nonlinearity is less evident at these high doses. The MM approximation of the full TMDD model is appropriate to describe the system when target concentrations are small relative to the free drug concentrations [25].
Stochastic Approximation Expectation Maximization (SAEM) and Monte Carlo Importance Sampling (IMP) methods [26] were used for structural model development. The SAEM method was conducted in 2 phases: i) burn-in phase until convergence criteria based on evaluation of objective function, thetas, sigmas, and all omega elements were achieved, followed by ii) accumulation phase. The IMP method was evaluated for the purpose of obtaining standard error estimates for each parameter and ensuring stability across independent fits to the model.
Because approximately 19% of the serum free evolocumab data were below the LLOQ, the M3 method [27,28,29] was used to analyze serum concentrations below LLOQ.
The between-subject variability (BSV) in the model parameters was assumed to follow a log-normal distribution. BSV was implemented as a full-block variance matrix for random effects on all parameters except for ka and km, as these 2 parameters were fixed from previous steps. The residual variability of the PK model was assumed to have both additive and proportional components.
In the first step, covariates were evaluated univariately. As discussed in the literature [30], statistical significance does not necessarily predict clinical importance; instead, inferences about clinical importance driven by estimated magnitude of effect and associated precision may be more appropriate. Using a similar approach [30], during univariate covariate analysis, point estimates for covariate effects were estimated for each covariate. Covariates were considered significant if the 95% confidence interval (CI) of the point estimate of covariate effect did not include 0 for continuous covariates or did not include 1 for categorical covariates. The 95% CI was calculated based on the standard error estimates following the IMP step. Given the stochastic nature of the SAEM and IMP methods, the change in objective function could not be used as statistical significance criteria for covariate inclusion and exclusion. If the covariate in the univariate analysis was found to be significant based on the above criterion, then the covariate was included in the model with its estimated effect fixed from that step. This step was continued for the rest of the covariates univariately on top of the existing significant covariates in the model, until a full model was obtained. A final model including all significant covariates in the model building process allowing all covariate estimates to be estimated at the final step was used to account for any interacting effects. This final model was used for all simulation and prediction.
Continuous covariates were modeled according to the general equation:
$${\text{P}}_{j} = TVP \cdot \left( {\frac{{{\text{cov}}_{j} }}{\text{cov}}} \right)^{\varTheta } \cdot \exp (\eta_{j} )$$
Categorical covariates were modeled according to the general equation:
$${\text{P}}_{j} = TVP \cdot {\varTheta }^{\text{cov}_{j}} \cdot \exp (\eta_{j} )$$
where P
j
is the individual model parameter for the jth subject, TVP is the typical value of the model parameter P, cov
j
is the individual’s value of the covariate, cov is the population median value of the covariate, Θ is the magnitude of the covariate effect, and η
j
is an independent and normally distributed random variable with mean 0 and variance ω2.
Covariates of interest included demographic parameters (body weight, sex, age, and race), concomitant medications (statins and ezetimibe), laboratory variables (baseline PCSK9), and disease state (heterozygous familial hypercholesterolemia [HeFH] and renal function). Of the race groups, only the African American group contained enough individuals to estimate covariate effects. The statin covariate represents patients on a statin only and no other comedication because statin comedication was a particular covariate of interest. The ezetimibe covariate includes all patients on ezetimibe, regardless of comedications. The dataset did not include enough patients on ezetimibe alone (< 3%) for an accurate measurement of the independent effect. For the PK model, any duration of administration of comedication was considered a covariate. Though for monoclonal antibodies renal elimination may be unlikely, potential changes in PK due to varying extents of renal impairment is a critical piece of information for the label. Therefore, a population PK approach similar to that performed for other monoclonal antibodies [31,32,33] was undertaken to rule out any possibilities of renal effect. The effect of renal function on PK was evaluated using both Cockcroft-Gault creatinine clearance (CrCL) and the Modification of Diet in Renal Disease (MDRD) measures. Across 26 placebo-controlled and active-controlled clinical trials, 0.1% of patients treated with at least one dose of evolocumab tested positive for binding antibody development. None of these patients tested positive for neutralizing antibodies. There was no evidence that anti-drug binding antibodies affected the PK profile, clinical response, or safety of evolocumab. Therefore, the incidence of anti-evolocumab binding antibodies is low, and not deemed necessary to evaluate in this analysis [34]. In addition, various analyses showed that evolocumab produced similar lipid-lowering effects in patients with and without diabetes, and hence not deemed a clinically relevant covariate in this analysis [35,36,37]. Albumin range was expected to be narrow for this population, hence not formally evaluated as a covariate. All covariates evaluated were baseline only.
When evaluating categorical effects, in order to ensure an adequate number of patients per category, categorical covariates with 5% or greater prevalence in the population data set of phase 1 and 2 data were evaluated for covariate effects. Of the race groups, only the African American group contained more than 5% of the population dataset to attempt to estimate covariate effects against a reference White patient. The ezetimibe covariate included all patients taking ezetimibe, regardless of lipid-lowering concomitant medications. Of 148 patients taking ezetimibe in the phase 1 and 2 PK model, 117 (79%) were also taking a statin. Thus, the ezetimibe covariate most generally represented a combination therapy covariate (hereafter notated as statin + ezetimibe). Patients with missing body weight, CrCL, or MDRD values were imputed to the mean values, and patients with missing baseline PCSK9 concentrations were excluded from analyses that included baseline PCSK9 as a covariate. The effect of each demographic and renal function covariate was estimated against CL, V, and Vmax, and the concomitant medications, laboratory variables, and HeFH were estimated against Vmax due to their possible relationships to unbound PCSK9 concentrations [8, 19, 38].
Finally, data from 5 phase 3 studies were used to update the popPK model. The observed phase 3 data were overlaid on the model predictions from the phase 1 and 2 model to ensure that no major differences were evident between the phase 3 PK data and the phase 1 and 2 PK data. Because of the sparseness of the phase 3 data and the use of only 2 dosing regimens in phase 3, estimates of Vmax and km were fixed to the phase 1 and 2 model parameter estimates. Similarly, additional covariates were not tested due to the sparseness of the data and potential for shrinkage [39]. Of 404 patients taking ezetimibe in the final PK model, 377 (93%) were also taking a statin; thus, the ezetimibe covariate continued to most generally represent a statin + ezetimibe combination therapy covariate.
Exposure–response analysis
The longitudinal PK/PD relationship in an indirect response model using results from Phase 1a and 1b studies has been reported elsewhere [12]. In phase 2 and phase 3 studies, the primary efficacy endpoint was the mean of weeks 10 and 12 and week 12 LDL-C reduction. The exposure–response analysis based on the primary endpoints was best described by an Emax model, rather than the longitudinal response, which would be best described by the indirect response model. Hence, a week 8–12 exposure–response model was used to characterize the relationship between evolocumab exposure and LDL-C at the mean of weeks 10 and 12 (LDLmean,wk10&12) for combined data from all the phase 2 studies. LDLmean,wk10&12 was a surrogate for the time-averaged effect (TAE) on LDL-C over weeks 8–12. It represented a time-averaged LDL-C reduction over the dosing interval and a comparable measure across dosing regimens Q2W or QM. Further, the absolute LDL-C values were measured clinically and are considered the raw data collected from the studies. We confirmed the appropriateness of the model by transforming the data to % change from baseline and evaluating diagnostic plots of DV vs PRED, and WRES vs PRED. Evolocumab area under the concentration–time curve from week 8 to 12 (AUCwk8–12) was used as the exposure metric, because this represented exposure at steady state during the same time period that the response variable was assessed. AUCwk8–12 for each patient in the phase 2 studies was predicted from the individual parameter estimates from the phase 1 and 2 PK model. Using the predicted AUCwk8–12 eliminated the residual error in the PK, which is a key assumption in the predictor variable for exposure–response relationships. Placebo response was evaluated but was not included in the model, because it was found to be negligible and did not influence the model parameters. The modeled data included the observed predose (days –13 and 0) LDL-C measurements and LDLmean,wk10&12.
The model took the form:
$$Eff = \frac{{E_{\hbox{max} } \cdot AUC_{wk8 - 12} }}{{(EC_{50} \cdot REG^{i} ) + AUC_{wk8 - 12} }}$$
Both (1) additive and (2) proportional-effect models were tested to relate the effect size to the baseline of LDL-C:
$$Y = BASL \cdot (1 + Eff)$$
(2)
where Y is the predicted response for any AUCwk8–12, BASL (mg/dL) is the baseline LDL-C concentration informed by the predose LDL-C measurements, Emax (mg/dL or a unit-less fraction) is the theoretical maximum evolocumab response for the mean of weeks 10 and 12, EC50 is the AUCwk8–12 required to achieve half-maximal response with evolocumab dosed Q2W, and Eff is the effect magnitude. A regimen effect (REG) was modeled as a multiplier on EC50 to account for the dosing interval differences between the Q2W and QM regimens. An indicator variable, i, with a value of 0 or 1, was used to indicate Q2W or QM regimens, respectively. If the 95% CI of the REG multiplier included 1, the EC50 of the QM regimen did not differ significantly from the Q2W regimen. This way, we could assess if regimen would have any impact on efficacy. The different EC50 values are a result of the difference in the time courses of target saturation between the dosing regimens, given the lack of kinetics in the exposure–response Emax model. A random effect on the baseline was included in the model assuming a log-normal distribution. Additive, proportional, and combined additive and proportional error models were considered to describe the residual variability. Data were fit using first-order conditional estimation method with interaction (FOCEI) followed by an IMP step for the purpose of obtaining standard error estimates for each parameter. A placebo effect was tested on Y.
Covariates of interest included concomitant medications (statins and ezetimibe), disease (diabetes and HeFH), and laboratory variables (baseline PCSK9). For the exposure–response model, only stable concomitant medication (> 4 weeks of administration before study day 1) was considered a covariate to ensure an accurate estimation of the effects of baseline concomitant medication use. The statin covariate represented patients taking only a statin and no other concomitant medication. The ezetimibe covariate included all patients taking ezetimibe, regardless of concomitant medications. Of 160 patients taking ezetimibe in the exposure–response model, 158 (99%) were also taking a statin; thus, the ezetimibe covariate most generally represented a combination therapy covariate. Patients with missing baseline PCSK9 concentrations were excluded from analyses that included baseline PCSK9 as a covariate. Concomitant medications and HeFH were estimated against both the baseline LDL-C concentration and Eff, and diabetes and laboratory variables were modeled against Eff.
Finally, the observed phase 3 data were overlaid on the model predictions from the phase 1 and 2 model to ensure that no major differences were evident between the phase 3 response data and the phase 1 and 2 response data. Because of the sparseness of the phase 3 data and the use of only 2 dosing regimens in phase 3, possibly leading to increased shrinkage in the updated PK model, the exposure–response model was not updated with data from phase 3. Similarly, additional covariates were not tested due to the sparseness of the data and potential for shrinkage. No liabilities in the results are anticipated as the patient population was similar between phase 2 and phase 3 studies; hence, it is not expected that inclusion of additional patients from phase 3 would lead to identification of any additional covariates.
For comparisons of outcomes across significant covariates, an 84 kg male patient (mean weight of the patients in this analysis) with hypercholesterolemia, not taking other lipid-lowering medications and with baseline PCSK9 of 5.9 nM (425 ng/mL), was considered as the reference patient.
Model-based simulation
Forest plots were generated based on the simulated parameter, incorporating the uncertainty for each significant covariate condition on the final covariate models. Parameter sets for 1000 individuals were constructed based on the variance–covariance structure for the thetas of the final covariate models using the simpar function built into the NONMEM HPC [40]. These simulations did not include BSV or residual variability. Outcomes of interest for each individual, AUCwk8–12 and LDLmean,wk10&12, were simulated under the significant covariate conditions of the final covariate models. Thus, the outcome for each individual under a covariate condition could be compared to the “same” individual in the reference (e.g., without the covariate condition). In this way, the geometric mean of the change in outcome relative to baseline for each covariate condition could be calculated across 1000 individuals. These were plotted along with the 95% CI of the geometric mean [41].