Abstract
Biallelic KARS1 mutations cause KARS-related diseases, a rare syndromic condition encompassing central and peripheral nervous system impairment, heart and liver disease, and deafness. KARS1 encodes the t-RNA synthase of lysine, an aminoacyl-tRNA synthetase, involved in different physiological mechanisms (such as angiogenesis, post-translational modifications, translation initiation, autophagy and mitochondrial function). Although patients with immune-hematological abnormalities have been individually described, results have not been collectively discussed and functional studies investigating how KARS1 mutations affect B cells have not been performed. Here, we describe one patient with severe developmental delay, sensoneurinal deafness, acute disseminated encephalomyelitis, hypogammaglobulinemia and recurrent infections. Pathogenic biallelic KARS1 variants (Phe291Val/ Pro499Leu) were associated with impaired B cell metabolism (decreased mitochondrial numbers and activity). All published cases of KARS-related diseases were identified. The corresponding authors and researchers involved in the diagnosis of inborn errors of immunity or genetic syndromes were contacted to obtain up-to-date clinical and immunological information. Seventeen patients with KARS-related diseases were identified. Recurrent/severe infections (9/17) and B cell abnormalities (either B cell lymphopenia [3/9], hypogammaglobulinemia [either IgG, IgA or IgM; 6/15] or impaired vaccine responses [4/7]) were frequently reported. Immunoglobulin replacement therapy was given in five patients. Full immunological assessment is warranted in these patients, who may require detailed investigation and specific supportive treatment.
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Data Availability
Data are available upon request.
Change history
03 November 2023
A Correction to this paper has been published: https://doi.org/10.1007/s10875-023-01600-w
References
Liu M, Liang Y, Huang B, et al. Report of rare and novel mutations in candidate genes in a cohort of hearing-impaired patients. Mol Genet Genomic Med. 2022;10(4):e1887. https://doi.org/10.1002/mgg3.1887.
Santos-Cortez RLP, Lee K, Azeem ZA, et al. Mutations in KARS, encoding lysyl-tRNA synthetase, cause autosomal-recessive nonsyndromic hearing impairment DFNB89. Am J Hum Genet. 2013;93(1):132–40. https://doi.org/10.1016/j.ajhg.2013.05.018.
Scheidecker S, Bär S, Stoetzel C, et al. Mutations in KARS cause a severe neurological and neurosensory disease with optic neuropathy. Hum Mutat. 2019;40(10):1826–40. https://doi.org/10.1002/humu.23799.
McLaughlin HM, Sakaguchi R, Liu C, et al. Compound heterozygosity for loss-of-function lysyl-tRNA synthetase mutations in a patient with peripheral neuropathy. Am J Hum Genet. 2010;87(4):560–6. https://doi.org/10.1016/j.ajhg.2010.09.008.
van derKnaap MS, Bugiani M, Mendes MI, et al. Biallelic variants in LARS2 and KARS cause deafness and (ovario)leukodystrophy. Neurology. 2019;92(11):e1225–37. https://doi.org/10.1212/WNL.0000000000007098.
Ardissone A, Tonduti D, Legati A, et al. KARS-related diseases: progressive leukoencephalopathy with brainstem and spinal cord calcifications as new phenotype and a review of literature. Orphanet J Rare Dis. 2018;13(1):45. https://doi.org/10.1186/s13023-018-0788-4.
Itoh M, Dai H, Horike SI, et al. Biallelic KARS pathogenic variants cause an early-onset progressive leukodystrophy. Brain. 2019;142(3):560–73. https://doi.org/10.1093/brain/awz001.
Ruzzenente B, Assouline Z, Barcia G, et al. Inhibition of mitochondrial translation in fibroblasts from a patient expressing the KARS p.(Pro228Leu) variant and presenting with sensorineural deafness, developmental delay, and lactic acidosis. HumMutat. 2018;39(12):2047–59. https://doi.org/10.1002/humu.23657.
Zhou XL, He LX, Yu LJ, et al. Mutations in KARS cause early-onset hearing loss and leukoencephalopathy: potential pathogenic mechanism. Hum Mutat. 2017;38(12):1740–50. https://doi.org/10.1002/humu.23335.
Kohda M, Tokuzawa Y, Kishita Y, et al. A comprehensive genomic analysis reveals the genetic landscape of mitochondrial respiratory Chain complex deficiencies. Plos Genet. 2016;12(1):e1005679. https://doi.org/10.1371/journal.pgen.1005679. (eCollection 2016 Jan).
Verrigni D, Diodato D, Di Nottia M, et al. Novel mutations in KARS cause hypertrophic cardiomyopathy and combined mitochondrial respiratory chain defect. Clin Genet. 2017;91(6):918–23. https://doi.org/10.1111/cge.12931.
Fuchs SA, Schene IF, Kok G, et al. Aminoacyl-tRNA synthetase deficiencies in search of common themes. Genet Med. 2019;21(2):319–30. https://doi.org/10.1038/s41436-018-0048-y.
Murray CR, Abel SN, McClure MB, et al. Novel causative variants in DYRK1A, KARS, and KAT6A associated with intellectual disability and additional phenotypic features. J Pediatr Genet. 2017;6(2):77–83. https://doi.org/10.1055/s-0037-1598639.
Wada MK, Fukuhara Y, Hayakawa I, et al. KARS-related diseases with macrothrombocytes and pulmonary arterial hypertension. Pediatr Int. 2023;65(1):e15428. https://doi.org/10.1111/ped.15428.
Seidel MG, Kindle G, Gathmann B, et al. The European Society for Immunodeficiencies (ESID) registry working definitions for the clinical diagnosis of inborn errors of immunity. J Allergy Clin Immunol Pract. 2019;7(6):1763–70. https://doi.org/10.1016/j.jaip.2019.02.004.
Shearer WT, Rosenblatt HM, Gelman RS, et al. Lymphocyte subsets in healthy children from birth through 18 years of age: the pediatric AIDS clinical trials group P1009 study. J Allergy Clin Immunol. 2003;112(5):973–80. https://doi.org/10.1016/j.jaci.2003.07.003.
Saettini F, Mantovani P, De Lorenzo P, et al. Severe and recurrent infections identify severe congenital neutropenia and primary immunodeficiencies in pediatric isolated neutropenia. Clin Immunol. 2020;223:108643. https://doi.org/10.1016/j.clim.2020.108643.
McMillan HJ, Humphreys P, Smith A, et al. Congenital visual impairment and progressive microcephaly due to lysyl-transfer ribonucleic acid (RNA) synthetase (KARS) mutations: the expanding phenotype of aminoacyl-transfer RNA synthetase mutations in human disease. J Child Neurol. 2015;30(8):1037–43. https://doi.org/10.1177/0883073814553272.
Peluso F, Palazzo V, Indolfi G, et al. Leopard-like retinopathy and severe early-onset portal hypertension expand the phenotype of KARS1-related syndrome: a case report. BMC MedGenomics. 2021;14:25. https://doi.org/10.1186/s12920-020-00863-1.
Cappuccio G, Ceccatelli Berti C, Baruffini E, et al. Biallelic KARS1 pathogenic variants affecting functions of cytosolic and mitochondrial isoforms are associated with a progressive and multisystem disease. HumMutat. 2021;42(6):745–61. https://doi.org/10.1002/humu.24210.
Saettini F, Herriot R, Prada E, et al. Prevalence of immunological defects in a cohort of 97 Rubinstein-Taybi syndrome patients. J ClinImmunol. 2020;40(6):851–60. https://doi.org/10.1007/s10875-020-00808-4.
Saettini F, Poli C, Vengoechea J, et al. Absent B cells, agammaglobulinemia, and hypertrophic cardiomyopathy in folliculin-interacting protein 1 deficiency. Blood. 2021;137(4):493–9. https://doi.org/10.1182/blood.2020006441.
Verdura E, Rodriguez-Palmero A, Velez Santamaria V, et al. Biallelic PI4KA variants cause a novel neurodevelopmental syndrome with hypomyelinating leukodystrophy. Brain 2021 144(5) https://doi.org/10.1093/brain/awab124
Baronio M, Saettini F, Gazzurelli L, et al. Immunological evaluation of patients affected with Jacobsen syndrome reveals profound not age-related lymphocyte alterations. J Clin Immunol. 2022;42(2):365–374. https://doi.org/10.1007/s10875-021-01169-2
Tang W, Dou Y, Qin T, et al. Skewed B cell receptor repertoire and reduced antibody avidity in patients with DOCK8 deficiency. Scand J Immunol. 2019;89(6):e12759. https://doi.org/10.1111/sji.12759.
Nie A, Sun B, Fu Z, Yu D. Roles of aminoacyl-tRNA synthetases in immune regulation and immune diseases. Cell Death Dis. 2019;10:901.
Ballotti R, Cheli Y, Corine BC. The complex relationship between MITF and the immune system: a melanoma immunotherapy (response) factor? Mol Cancer. 2020;19:170.
Jellusova J, Rickert RC. The PI3K pathway in B cell metabolism. Crit Rev Biochem Mol Biol. 2016;51(5):359–78. https://doi.org/10.1080/10409238.2016.1215288.
Del Pino-Molina L, M Torres Canizales JM, Rodríguez-Pena R & López-Granados E. Evaluation of B-cell intracellular signaling by monitoring the PI3K-Akt axis in patients with common variable immunodeficiency and activated phosphoinositide 3-kinase delta syndrome. Cytometry B Clin Cytom . 2021 100(4):460–466. 10.Proc Natl Acad Sci U S A. 2018 115(35): E8228–E8235.
Harder I, Münchhalfen M, Andrieux G, et al. Dysregulated PI3K signaling in B cells of CVID patients. Cells. 2022;11(3):464. https://doi.org/10.3390/cells11030464.
Nyga R, Pecquet C, Harir N, et al. Activated STAT5 proteins induce activation of the PI 3-kinase/Akt and Ras/MAPK pathways via the Gab2 scaffolding adapter. Biochem J. 2005;390(Pt 1):359–66. https://doi.org/10.1042/BJ20041523.
Manning BD, Cantley LC. AKT/PKB signaling: navigating downstream. Cell. 2007;129:1261–74.
Milner JD, Vogel TP, Forbes L, et al. Early-onset lymphoproliferation and autoimmunity caused by germline STAT3 gain-of-function mutations. Blood. 2015;125(4):591–9. https://doi.org/10.1182/blood-2014-09-602763.
Pelham SJ, Caldirola MS, Avery DT, et al. STAT5B restrains human B-cell differentiation to maintain humoral immune homeostasis. J Allergy Clin Immunol. 2022;150(4):931–46. https://doi.org/10.1016/j.jaci.2022.04.011.
Park SG, Kim HJ, Min YH, et al. Human lysyl-tRNA synthetase is secreted to trigger proinflammatory response. Proc Natl Acad Sci U S A. 2005;102(18):6356–61.
Lee AK, Aifantis I, Thandapani P. Emerging roles for tRNAs in hematopoiesis and hematological malignancies. Trends Immunol. 2022;43(6):466–77.
Hidalgo San Jose L, Sunshine MJ, Dillingham CH, et al. Modest declines in proteome quality impair hematopoietic stem cell self-renewal. Cell Rep. 2020;30(1):69-80.e6. https://doi.org/10.1016/j.celrep.2019.12.003.
Ardissone A, Lamantea E, Quartararo J, Dallabona C, Carrara F, Moroni I, Donnini C, Garavaglia B, Zeviani M, Uziel G. A novel homozygous YARS2 mutation in two Italian siblings and a review of literature. JIMD Rep. 2015;20:95–101. https://doi.org/10.1007/8904_2014_397.
Kanaji T, Vo MN, Kanaji S, et al. Tyrosyl-tRNA synthetase stimulates thrombopoietin-independent hematopoiesis accelerating recovery from thrombocytopenia. 2018. https://doi.org/10.1073/pnas.1807000115 PNAS
Kim BH, Jung WY, Lee H, et al. Lysyl-tRNA synthetase (KRS) expression in gastric carcinoma and tumor-associated inflammation. Ann Surg Onco. 2014;21(6):2020–7. https://doi.org/10.1245/s10434-014-3522-z.
Murphy DM, Cox DJ, Connolly SA, et al. Trained immunity is induced in humans after immunization with an adenoviral vector COVID-19 vaccine. J Clin Invest. 2023;133(2):e162581. https://doi.org/10.1172/JCI162581.
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Francesco Saettini designed the work and coordinated the project. Mario Mauri, Grazia Fazio, Manuel Quadri, and Crisitina Bugaring performed the experiments. Francesco Saettini wrote the manuscript. All authors contributed with clinical, immunological, and molecular data. All authors approved the final version of the manuscript.
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Saettini, F., Guerra, F., Fazio, G. et al. Antibody Deficiency in Patients with Biallelic KARS1 Mutations. J Clin Immunol 43, 2115–2125 (2023). https://doi.org/10.1007/s10875-023-01584-7
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DOI: https://doi.org/10.1007/s10875-023-01584-7