Abstract
A novel Nickel (II) complex of 2-hydroxypyridine-N-oxide has been prepared and characterized by X-ray crystal structure analysis, FT-IR, UV spectra and thermogravimetry. The X-ray diffraction study reveals that the nickel complex is a 1D linear polymer in space group Pī with a = 6.250(1), b = 8.746(2), c = 9.462(2) Å, α = 81.76(3)o, β = 79.55(3)o and γ = 81.17(3)o. Two nickel ions are present in the unit cell related by the crystallographic centre of symmetry at ½ ½ ½. There are two different short non-bonded Ni to Ni separations in the polymeric structure: 3.454 and 3.467 Å respectively. Both room temperature magnetic moment measurements, and theoretical calculations are in favor of a simple paramagnetic system. As a complementary study, plane wave pseudopotential DFT calculations were performed, utilizing eight different XC functionals. The PBE and PBE0 functionals reproduce well the X-ray crystal structure of the complex, while the HSE functional gives a band gap which corresponds reasonably to the experimentally estimated value. The results of antimicrobial properties and thermal analysis of the complex are also reported.
Graphical Abstract
The preparation, crystallization and X-ray analysis of a novel 1D polymeric Nickel (II) complex of 2-hydroxypyridine-N-oxide and its characterization by FT-IR, UV spectra, thermogravimetry and possible therapeutics via antimicrobial studies are described.
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References
Bullen GJ, Mason R, Pauling P (1965) Inorg Chem 4:456
Ginsberg AP, Martin LR, Sherwood RC (1968) Inorg Chem 7:932
Rodriguez-Dieguez A, Mota AJ, Cano J, Ruiz J, Choquesillo-Lazarte D, Colacio E (2009) Dalton Trans. doi:10.1039/b901415b
Bronisz R (2007) Inorg Chem 46:6733
Tandon SS, Bunge SD, Sanchiz J, Thompson LK (2012) Inorg Chem 51:3270
Bonnet M, Aronica C, Chastanet G, Pilet G, Luneau D, Mathoniere C, Clerac R, Robert V (2008) Inorg Chem 47:1127
Amo-Ochoa P, Castillo O, Alexandre SS, Welte L, dePablo PJ, Rodriguez-Tapiador MI, Gomez-Herrero J, Zamora F (2009) Inorg Chem 48:7931
Barnes JA, Hatfield WE (1971) Inorg Chem 10:2355
CCP4 (1994) Acta Crystallogr Sect D Biol Crystallogr 50:760–763
Evans P (2006) Acta Crystallogr Sect D Biol Crystallogr 62:72–82
Kabsch W (1988) J Appl Crystallogr 21:67–72
Kabsch W (1988) J Appl Crystallogr 21:916–924
Kabsch W (1993) J Appl Crystallogr 26:795–800
Kabsch W (2010) Acta Crystallogr Sect D Biol Crystallogr 66:125–132
Winter G (2010) J Appl Crystallogr 43:186–190
Winter G, Lobley CM, Prince SM (2013) Acta Crystallogr Sect D Biol Crystallogr 69:1260–1273
Sheldrick GM (1986) SHELX86, program for crystal structure determination. University of Göttingen, Germany
Sheldrick GM (1997) SHELXL97, program for crystal structure refinement. University of Göttingen, Germany
Farrugia LJ (1999) J Appl Crystallogr 1999:837
Valiev M, Bylaska EJ, Govind N, Kowalski K, Straatsma TP, van Dam HJJ, Wang D, Nieplocha J, Apra E, Windus TL, de Jong WA (2010) NWChem: a comprehensive and scalable open-source solution for large scale molecular simulations. Comput Phys Commun 181:1477
Bylaska EJ, Taylor PR, Kawai R, Weare JH (1996) J Phys Chem 100:6966
Troullier N, Martins JL (1991) Phys Rev B 43:1993
Bylaska EJ, Tsemekhman KL, Baden SB, Weare JH, Jonsson H (2011) J Comput Chem 32:54
Bylaska EJ (2011) Lecture notes pacific northwest national laboratory 2011
Monkhorst HJ, Pack JD (1976) Phys Rev B 13:5897
Vosko SH, Wilk L, Nusair M (1980) Can J Phys 58:1200
Perdew JP, Burke K, Ernzerhof M (1996) Phys Rev Lett 77:3865
Zhang Y, Yang W (1998) Phys Rev Lett 80:890
Perdew JP, Ruzsinszky A, Csonka GI, Vydrov OA, Scuseria GE, Constantin LA, Zhou X, Burke K (2008) Phys Rev Lett 100:136406
Perdew JP, Ernzerhof M, Burke K (1996) J Chem Phys 105:9982
Perdew JP, Ernzerhof M, Burke K (1997) Chem Phys Lett 265:115
Heyd J, Scuseria GE, Ernzerhof M (2003) J Chem Phys 118:8207
Adamo C, Barone V (1999) J Chem Phys 110:6158
ORCA version 3.03—An ab initio,DFT and Semiempirical SCF-MO Package. Design and scientific directorship frank neese. Technical directorship frank wennmohs. Max-Planck Institute for Chemical Conversion, Stiftsh, pp 34–36 Mulheim a.d. Ruhr Germany
Noodleman L, Davidson ER (1986) Chem Phys 109:131
Ginsberg AV, Martin RL, Sherwood RC (1968) Inorg Chem 7:932
Makhyoun MA. J Mol Model (submitted)
Bencini D, Gatteschi J (1980) J Am Chem Soc 108:5763
Ye S, Neese F (2010) Inorg Chem 49:772
Yakovkin IN, Dowben PA (2007) Surf Rev Lett 14:481
Janotti A, Varley JB, Rinke P, Umezawa N, Kresse G, Van de Walle CG (2010) Phys Rev B 81:085212
Blochl PE (1995) J Chem Phys 103:7422
Zhurko GA, Zhurko DA (2014) Chemcraft software. version b484. www.chemcraftprog.com
El-Metwally NM, Gabr IM, El-Asmy AA, Abou-Hussen AA (2006) Transit Met Chem 31:71
Accelerys Corporation (2012) Discovery studio software version 3.5. http://accelrys.com/products/datasheets/whats-new-in-discovery-studio.pdf)
Farrugia LJ (1997) ORTEP-3 for windows—a version of ORTEP-III with a Graphical User Interface (GUI). J Appl Cryst 30:565–570. Based on ORTEP-III (v 1.0.3) by C. K. Johnson and M. N. Burnett
Nyokong T, Greedan JE (1982) Inorg Chem 21:398
Fisher ME (1964) Am J Phys 32:343
Macrae CF, Edgington PR, McCabe P, Pidcock E, Shields GP, Taylor R, Towler M, van de Streek J (2006) J Appl Cryst 39:453
Acknowledgments
We are grateful to Dr. Carina M. C. Lobley, Dr. Anna J. Warren and Professor Thomas Sorensen, Diamond Light Source Ltd, Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, UK, for help initially in providing the I(hkl) data used in this study.
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Makhyoun, M.A., Palmer, R.A., Soayed, A.A. et al. Synthesis, Crystal Structure and Comparative DFT Studies of a 1D Ni(II) Polymeric Complex of 2-Hydroxypyridine-N-oxide. J Chem Crystallogr 46, 269–279 (2016). https://doi.org/10.1007/s10870-016-0656-9
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DOI: https://doi.org/10.1007/s10870-016-0656-9