Rhodomonas sp. cultures
Rhodomonas sp. was supplied by the Dutch aquaculture industry, as a strain used in a commercial application. The strain was characterized by 18S sequencing and confirmed as Rhodomonas sp. (Online Resource 1). The marine cryptophytic microalgae Rhodomonas sp. was maintained in pre-sterilized 300-mL Erlenmeyer flasks (20 min at 120 °C) containing 150 mL of 10 times concentrated nutrients of the modified L1 medium to maintain a nutrient-rich condition. The final concentration of the growth medium is 8.82 mM NaNO3, 0.36 mM NaH2PO4·2H2O, 0.11 mM Na2EDTA·2H2O, 0.11 mM FeCl2·6H2O, 9.1 μΜ MnCl2·4H2O, 0.77 μΜ ZnCl2·7H2O, 0.34 μΜ CoCl2·6H2O, 0.4 μΜ CuSO4·5H2O, 0.24 μΜ Na2MoO4·2H2O, 0.29 μΜ vitamin B1, 0.07 μΜ vitamin B12 and 0.01 μΜ vitamin H with a salinity of 30 g L−1 (adapted from Guillard, et al., 1993). The medium was filtered through a Sartorius membrane filter (0.2-μm pore size) into sterilized Erlenmeyer flasks. Cultures were maintained in an orbital incubator at 20 ± 1 °C and 5% CO2 v/vair was supplied in the headspace of the Erlenmeyer flasks. Sodium bicarbonate was added to the L1 medium to a final concentration of 8 mM as a pH buffer. All the stock cultures were continuously illuminated at a photon flux density (PFD) of 120 μmolphotons m−2 s−1 of cool white light provided by TL fluorescent tubes. Culture growth was monitored by measuring the cell abundance with a Coulter counter (Beckman Coulter Z1) to ensure that the inoculum was in the exponential phase before it was used in further experiments.
Experimental conditions
This research consists of two experimental setups. At the first experimental setup, Rhodomonas sp. was cultivated in batch cultures in Erlenmeyer flasks. Different light quantities and qualities were used for this experiment. During the second experimental setup, Rhodomonas sp. was grown in photobioreactors in continuous cultures under a set light intensity with different light wavelengths.
Light quantity
Three experiments were conducted in which Rhodomonas sp. cultures were exposed to different light intensities ranging from 8 ± 10, 60 ± 10 and 80 ± 20 μmolphotons m−2 s−1. Three different wavelengths were applied by white, red, green and blue (WRGB) LED lights, representing the colours blue, green and red (λ peak: 461, 517 and 630 nm respectively) with white LED light (λ range: 415–720 nm) as reference (Fig. 1). The light intensity was measured and monitored manually with the help of a photosynthetically active radiation (PAR) meter (SKP 200/217/140, Skye, UK). Rhodomonas sp. was batch cultured in pre-sterilized 300-mL Erlenmeyer flasks (20 min at 120 °C) containing 150 mL of 10 times concentrated L1 medium (salinity 30 g L−1) and 8 mM sodium bicarbonate at 20 ± 1 °C in an orbital incubator (Gallenkamp) and 5% CO2 V/Vair supply. The experiments were started with a culture density of 4 ± 0.1 × 105 cells mL−1 (10% of medium volume). All experiments were conducted in triplicates. During the experiments, light pollution and background light were excluded.
Light quality
Rhodomonas sp. was continuously cultivated in four different flat panel Algaemist-S photobioreactors (Technical Development Studio, Wageningen University, the Netherlands) with 0.4 L volume, 14 mm light path and 0.028 m2 total illuminated area. The warm light was provided by Bridgelux LED lamps (BXRAW1200, Bridgelux, USA) from one side of the Algaemist-S system. Unintentional exposure to other light sources was prevented by a black cover on the other side of the reactor. In order to illuminate the reactor with different light qualities, the light panel was covered with Lee filters (LEE Filters, USA), allowing transmission of a specific range of wavelengths. The following Lee filters were chosen targeting the absorption peaks of Rhodomonas sp.: Tokyo blue (380–520 nm, λmax peak 445 nm); Aurora Borealis green (520–600 nm, λmax peak 551 nm) and Marius red (λmax peak 700 nm) (Fig. 2). In all cultures, the incident light was 50 μmolphotons m−2 s−1, while in the turbidostat mode, the secondary light PAR sensor of the systems ensured outgoing light of 15 μmolphotons m−2 s−1. After inoculation, the reactor was started running in batch mode until the outgoing light intensity equalled 15–20 μmolphotons m−2 s−1. The temperature within the culture compartment of the photobioreactor (PBR) was kept stable at 22 °C by cooling the adjacent water compartment. The pH was set at 7.5 ± 0.1 and maintained constant by automatically regulating the flow of the air/CO2 mixture pumped into the culture.
Culture analysis
Biomass
Samples were taken daily during light intensity experiments (Erlenmeyers) and wavelength experiments (PBR). These samples were analyzed for basic culture monitoring. Optical density was measured at 750 nm (OD750nm) in a spectrophotometer (HACH, DR 5000), from which biomass concentration (Cx) was calculated as dry weight (Online Resource 2). Cell abundance, size range 7–14 μm, was measured with a Coulter counter (Beckman Coulter Z1). The fact that biomass accumulation was proportional to optical density was shown by a linear relationship between dry weight and OD750nm. All individual sample measurements were performed in triplicate. The growth rate (μ) was calculated for batch cultures from Eq. (1), while for the turbidostat mode as the dilution rate (D) through Eq. (2), where VH is the harvested volume in a period of time and VR the reactor volume.
$$ \mu =\frac{\mathit{\ln}\frac{Cx_1}{Cx_0}}{t_1-{t}_0} $$
(1)
$$ \mu =D=\frac{\frac{V_H}{t_1-{t}_0}}{V_R} $$
(2)
The biomass production rate (rx) for the turbidostat mode was calculated from the growth rate and the biomass concentration (Cx, Eq. (3)). The biomass production rate and the absorbed light (ΔIph = Iph,in − Iph,out) were used for the calculation of biomass yield on light (Yx/ph) (Eq. (4)). Yx/ph is defined as the biomass concentration that can be produced over a mol of photon.
$$ {r}_x=\mu \times {C}_x $$
(3)
$$ {Y}_{x/\mathrm{ph}}=\frac{r_x}{{\varDelta I}_{\mathrm{ph}}} $$
(4)
Phycoerythrin concentration
Samples from each experiment were analyzed on the PE concentration. In the batch culture experiment (Erlenmeyers), PE analysis was performed twice during the growth phase. The first sample was taken when the culture was in the exponential growth phase (day 4), while the second sampling took place during the stationary phase of the culture (day 10). The phycobilin pigments were extracted by a freeze-thawing process, centrifuged and analyzed using UV-VIS spectroscopy according to Bennett and Bogorad (1973) (Lawrenz et al. 2011). Absorbance at 545 nm was used after scatter corrected by subtracting the absorbance at 750 nm. PE was calculated in microgram per litre according to Eq. (5):
$$ \mathrm{PE}=\frac{A}{\varepsilon d}\times \mathrm{MW}\times \frac{V_{\mathrm{sample}}}{V_{\mathrm{buffer}}}\times {10}^6 $$
(5)
where ε is the molar extinction coefficient of PE (2.41 × 106 L mol−1 cm−1), MW is the molecular weight of PE (240,000 g mol−1), d is the path length in centimetre and Vsample and Vbuffer are the volumes of the sample and the buffer respectively. In the PBR experiment, samples for pigment analysis were taken when the culture was in a steady state.
Absorption spectrum
Light absorption was measured in a double beam spectrophotometer (Cary 300 UV-VIS, Agilent, USA) fitted with a Labsphere DRA-CA-3300 integrating sphere. The absolute absorbed light per wavelength was used to calculate the photosynthetically usable radiation (PUR) from PAR using Eq. (6):
$$ \mathrm{PUR}={\sum}_{\lambda =400}^{700}\mathrm{PAR}\left(\lambda \right)\alpha \left(\lambda \right) d\lambda $$
(6)
where α(λ) represents the probability that a photon with a given wavelength (λ) being absorbed by the cell (Morel 1978). It is derived by the absorption spectrum of Rhodomonas sp., normalized to its peak maximum (λ = 440 nm).
Processing for spectroscopy using FTIR
Fourier-transformed infrared spectrometry (FTIR) analysis was used to investigate changes in the bulk carbohydrate, lipid and protein content. A 50 mL sample was concentrated by centrifuging at 2500 1153×g for 15 min. The supernatant was discarded and 50 mL of ammonium formate (0.5 M) was added to rinse out the salt and preventing osmotic shock. The rinsing was repeated twice. Droplets of the concentrated suspension were placed on a microscope slide and thereafter dried at 50 °C for 24 h. The slides were stored in desiccators until the FTIR analysis, using the PerkinElmer Frontier FTIR equipped with the attenuated total reflectance (ATR) accessory. The spectrum collected was in the range of 4000–650 cm−1, and data was exported using the Unscrambler-X software (Camo Analytics, Norway). The spectral absorption bands were obtained and identified based on previously published studies (Table 1).
Table 1 Assignments of bands found in FTIR spectra of Rhodomonas sp. Vas and Vs indicate asymmetric and symmetric stretching Statistical analysis
All data measurements are shown as mean ± standard deviation (± SD) of three independent replicates for the flask experiment, while in the PBR experiments, the measurements that are shown are the average of five daily measurements when the reactor is in a steady state (stable dilution rate). Statistical analysis was performed using SPSS 25.0 statistical package (SPSS Inc., USA) and Prism 8.0.2 (GraphPad, USA). Data were tested for normal distribution (Kolmogorov-Smirnoff goodness of fit test) before being analyzed by ANOVA. The results were analyzed by one-way analyses of variance (ANOVA) with α = 0.05, followed by the post hoc test. For the statistical analysis of the FTIR results, principal component analysis (PCA) was carried out in R, using the factoextra R package to create a ggplot2-based visualization.