Amann, R. I., W. Ludwig & K.-H. Schleifer, 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews 59: 143–169.
PubMed
CAS
PubMed Central
Google Scholar
Anagnostidis, K. & J. Komárek, 1985. Modern approach to the classification system of cyanophytes, Introduction. Archiv für Hydrobiologie. Supplementband 71. Algological Studies 38(39): 291–302.
Google Scholar
Bates, S. T., D. Berg-Lyons, C. L. Lauber, W. A. Walters, R. Knight & N. Fiefer, 2012. A preliminary survey of lichen associated eukaryotes using pyrosequencing. The Lichenologist 44: 137–146.
Article
Google Scholar
Bornet, E. & C. Flahaut, 1887. Révision des Nostocacées hétérocystées. Annales des Sciences Naturelles (Botanique) 5: 51–129.
Google Scholar
Bornet, E. & C. Flahaut, 1888a. Note sur deux nouveaux genres d’algues perforantes. Journal de Botanique 2: 161–165.
Google Scholar
Bornet, E. & C. Flahaut, 1888b. Revision des Nostocacées hétérocystées. Annales des Sciences Naturelles (Botanique) 7: 177–262.
Google Scholar
Bourrelly, P., 1970. Les algues d’eau douce III. Boubée & Cie, Paris.
Google Scholar
Castenholz, R. W., 1992. Species usage, concept, and evolution in the cyanobacteria (blue-green algae). Journal of Phycology 28: 737–745.
Article
Google Scholar
Castenholz, R. W., 2001. General characteristics of cyanobacteria. In Garrity, G. M. (ed.), Bergey’s Manual of Systematic Bacteriology. Springer, New York: 474–478.
Google Scholar
Castenholz, R. W. & T. B. Norris, 2005. Revisionary concepts of species in the cyanobacteria and their applications. Algological Studies 117: 53–69.
Article
Google Scholar
Castenholz, R. W. & J. B. Waterbury, 1989. Group I. Cyanobacteria. Preface. In Holt, J. G. (ed.), Bergey´s Manual of Systematic Bacteriology, Vol. 3. Williams & Wilkins, Baltimore: 1710–1727.
Google Scholar
Cohan, F. M., 2001. Bacterial species and speciation. Systematics Biology 50: 513–524.
Article
CAS
Google Scholar
Cohan, F. M., 2002. What are bacterial species? Annual Review of Microbiology 56: 457–487.
PubMed
Article
CAS
Google Scholar
Cohan, F. M., 2004. Concepts of bacterial biodiversity for the age of genomics. In Fraser, C. M., T. Read & K. E. Nelson (eds), Microbial Genomes. Humana Press, New York: 175–194.
Compere, P., 2005. The nomenclature of the Cyanophyta under the Botanical Code. Algological Studies 117: 31–37.
Article
Google Scholar
Dawson, C. A. & P. H. A. Sneath, 1985. A probability matrix for the identification of vibrios. Journal of Applied Bacteriology 58: 407–423.
PubMed
Article
CAS
Google Scholar
de Queiroz, K., 1998. Species and speciation. In Howard, D. J. & S. H. Berlocher (eds), Endless Forms. Oxford University Press, Oxford: 57–75.
Google Scholar
Desikachary, T. V., 1959. Cyanophyta. Indian Council Agricultural Research. Academic Press, New York.
Google Scholar
Dor, I. & M. Hornhoff, 1985. Salinity-temperature relations and morphotypes of mixed population of coccoid cyanobacteria from a hot, hypersaline pond in Israel. Marine Ecology 6: 13–25.
Article
Google Scholar
Drouet, F., 1981. Summary of the classification of blue-green algae. Nova Hedwigia, Beihefte 66: 133–209.
Google Scholar
Elenkin, A. A., 1938 & 1949. Sinezelenye vodorosli SSSR Monographia algarum cyanophycearum aquidulcium et terrestrium in finibus URSS inventarum. Pars spec 1, 2, Akademia Nauk SSSR, Moscow-Leningrad.
Feldgarden, M., N. Byrd & F. M. Cohan, 2003. Gradual evolution in bacteria: evidence from Bacillus systematics. Microbiology 149: 3565–3573.
PubMed
Article
CAS
Google Scholar
Fox, G. E., J. D. Wisotzkey & P. Jurtshuk, 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. International Journal of Systematic Bacteriology 42: 166–170.
PubMed
Article
CAS
Google Scholar
Friedmann, E. I. & L. Borowitzka, 1982. The symposium on taxonomic concepts in blue-green algae: towards a compromise with the bacteriological code? Taxon 31: 673–683.
Article
Google Scholar
Fritsch, F. E., 1959. The Structure and Reproduction of the Algae, Vol. 1. University Press, Cambridge.
Google Scholar
Garcia-Pichel, F., L. Prufert-Bebout & G. Muyzer, 1996. Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to be a cosmopolitan cyanobacterium. Applied and Environmental Microbiology 62: 3284–3291.
PubMed
CAS
PubMed Central
Google Scholar
Geitler, L., 1932. Cyanophyceae. In Kolkwitz, R. (ed.), Rabenhorst‘s Kryptogamen Flora von Deutschland, Österreich und der Schweiz, Vol. 14. Akademische Verlagsgesellschaft, Leipzig: 1–1196.
Google Scholar
Giovannoni, S. J., S. Turner, G. J. Olsen, J. Barns, D. J. Lane & N. R. Pace, 1988. Evolutionary relationships among cyanobacteria and green chloroplasts. Journal of Bacteriology 170: 3584–3592.
PubMed
CAS
PubMed Central
Google Scholar
Godreuil, S., F. M. Cohan, H. Shah & M. Tibayrenc, 2005. Which species concept for pathogenic bacteria? An e-debate. Infection, Genetics and Evolution 5: 375–387.
PubMed
Article
Google Scholar
Golubic, S., 1976. Organisms that build stromatolites. In Walter, M. R. (ed.), Stromatolites, Developments in Sedimentology. Elsevier Scientific Publishing Co., Amsterdam: 113–126.
Google Scholar
Golubic, S., 1979. Einführung in die Probleme der numerischen Taxonomie bei Cyanophyten. In Krumbein, W. E. (ed.), Cyanobacterien oder Algen?. Oldenburg, Littman: 15–32.
Google Scholar
Gomont, M., 1892. Monographie des Oscillariées (Nostocaceae homocystées). Annales des Sciences Naturelles, Serie Botanique 15: 265–368.
Google Scholar
Hernandez-Marine, M. & R. Wit, 1999. Characterization and morphological transformation of laboratory grown Leptolyngbya valderiana (Gom.) Anagn. et Komárek (Cyanophyta/Cyanobacteria). Algological Studies 94: 139–146.
Google Scholar
Hoffmann, L., 2005. Nomenclature of Cyanophyta/Cyanobacteria: roundtable on the unification of the nomenclature under the Botanical and Bacteriological Codes. Algological Studies 117: 13–29.
Article
Google Scholar
Holtkamp, E., 1985. The microbial mats of the Gavish Sabkha (Sinai). Environmental factors as determinants of the formation, structure and composition of hypersaline cyanobacterial associations. PhD Thesis University of Oldenburg, Germany.
Honda, D., A. Yokota & J. Sugiyama, 1999. Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains. Journal of Molecular Evolution 48: 723–739.
PubMed
Article
CAS
Google Scholar
Hugenholtz, P. & N. R. Pace, 1996. Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. Trends in Biotechnology 14: 190–197.
PubMed
Article
CAS
Google Scholar
Iteman, I., R. Rippka, N. Tandeau de Marsac & M. Herdman, 2000. Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer of cyanobacteria. Microbiology 146: 1275–1286.
PubMed
CAS
Google Scholar
Johansen, J. R. & D. A. Casamatta, 2005. Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algological Studies 117: 71–93.
Article
Google Scholar
Komárek, J., 2013. Cyanoprokaryota 3. Teil Heterocystous Genera. In Büdel, B., G. Gärtner, L. Krienitz & M. Schagerl (eds), Süßwasserflora von Mitteleuropa. Spektrum Akademischer Verlag.
Komárek, J. & K. Anagnostidis, 1999. Cyanoprokaryota 1. Teil Chroococcales. In Ettl, H., G. Gärtner, H. Heynig & D. Mollenhauer (eds), Süßwasserflora von Mitteleuropa. Gustav Fischer, Jena-Stuttgart-Lübeck-Ulm.
Komárek, J. & K. Anagnostidis, 2005. Cyanoprokaryota 2. Teil Oscillatoriales. In Büdel, B., G. Gärtner, L. Krienitz & M. Schagerl (eds), Süßwasserflora von Mitteleuropa. Gustav Fischer, Jena-Stuttgart-Lübeck-Ulm.
Komárek, J., S. Ventura, S. Turicchia, J. Komarkova, C. Mascalchi & E. Soldati, 2005. Cyanobacterial diversity in alkaline marshes of northern Belize (Central America). Algological Studies 117: 265–278.
Article
Google Scholar
Kondrateva, N. V., 1968. Sino-zeleni vodorosti. In Vizn. Prisnov. Vodorost. Ukr. RSR 1, 2, Naukova Dumka, Kiev.
Krumbein, W. E., 1979. Über die Zuordnung der Cyanophyten. In Krumbein, W. E. (ed.), Cyanobacterien oder Algen?. Oldenburg, Littman: 33–48.
Google Scholar
Laloui, W., K. A. Palinska, R. Rippka, F. Partensky, N. Tandeau de Marsac, M. Herdman & I. Iteman, 2002. Genotyping of axenic and non-axenic isolates of the genus Prochlorococcus and the “marine Synechococcus clade” by size, sequence analyses or RFLP of the internal transcribed spacer (ITS) of the ribosomal operon. Microbiology 148: 453–455.
PubMed
CAS
Google Scholar
Lodders, N., E. Stackebrandt & U. Nübel, 2005. Frequent genetic recombination in natural populations of the marine cyanobacterium Microcoleus chthonoplastes. Environmental Microbiology 7: 434–442.
PubMed
Article
CAS
Google Scholar
Lyra, C., M. Laamanen, J. Lehtimäki, A. Surakka & K. Sivonen, 2005. Benthic cyanobacteria of the genus Nodularia are non-toxic, without gas vacuoles, able to glide and genetically more diverse than planktonic Nodularia. International Journal of Systematic and Evolutionary Microbiology 55: 555–568.
PubMed
Article
CAS
Google Scholar
Marquardt, J. & K. A. Palinska, 2007. Genotypic and phenotypic diversity of cyanobacteria assigned to the genus Phormidium (Oscillatoriales) from different habitats and geographical sites. Archives of Microbiology 187: 397–413.
PubMed
Article
CAS
Google Scholar
Mayr, E., 1982. The Growth of the Biological Thought. The Belknap Press, Cambridge.
Google Scholar
Moore, L., R. G. Rocap & S. W. Chisholm, 1998. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393: 464–467.
PubMed
Article
CAS
Google Scholar
Nübel, U., F. Garcia-Pichel & G. Muyzer, 1997. PCR primers to amplify 16S rRNA genes from cyanobacteria. Applied and Environmental Microbiology 63: 3327–3332.
PubMed
PubMed Central
Google Scholar
Oren, A., 2004. A proposal for further integration of the cyanobacteria under the Bacteriological Code. International Journal of Systematic and Evolutionary Microbiology 54: 1895–1902.
PubMed
Article
Google Scholar
Oren, A., 2011. Naming Cyanophyta/Cyanobacteria – a bacteriologist’s view. Fottea 11: 9–16.
Google Scholar
Oren, A., 2014. Cyanobacteria: biology, ecology and evolution. In Sharma, N. K., A. K. Rai & L. Stal (eds) Stress Biology of Cyanobacteria: Molecular Mechanisms to Cellular Responses. Wiley, New York: 3–20.
Oren, A. & G. M. Garrity, 2014. Proposal to change general consideration 5 and principle 2 of the International Code of Nomenclature of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology 64: 309–310.
PubMed
Article
Google Scholar
Oren, A. & B. J. Tindall, 2005. Nomenclature of the Cyanophyta/Cyanobacteria/Cyanoprokaryotes under the International Code of Nomenclature of Prokaryotes. Algological Studies 117: 39–52.
Article
Google Scholar
Otsuka, S., S. Suda, R. Li, S. Matsumoto & M. M. Watanabe, 2000. Morphological variability of colonies of Microcystis morphospecies in culture. Journal of General and Applied Microbiology 46: 57–68.
Article
Google Scholar
Otsuka, S., S. Suda, S. Shibata, H. Oyaizu, S. Matsumoto & M. M. Watanabe, 2001. A proposal for the unification of five species of the cyanobacterial genus Microcystis Kützing ex Lemmermann 1907 under the Rules of the Bacteriological Code. International Journal of Systematic and Evolutionary Microbiology 51: 873–879.
PubMed
Article
CAS
Google Scholar
Palinska, K. A. & W. E. Krumbein, 2000. Perforation patterns in filamentous cyanobacteria. Journal of Phycology 36: 139–145.
Article
Google Scholar
Palinska, K. A., W. E. Krumbein & U. Schlemminger, 1998. Ultramorphological studies on Spirulina sp. Botanica Marina 41: 349–355.
Article
Google Scholar
Palinska, K. A., W. Liesack, E. Rhiel & W. E. Krumbein, 1996. Phenotype variability of identical genotypes: the need for a combined cyanobacterial taxonomy demonstrated on Merismopedia-like isolates. Archives of Microbiology 166: 224–233.
PubMed
Article
CAS
Google Scholar
Palinska, K. A. & J. Marquardt, 2008. Conformity between molecular and phenotypic results demonstrated on Phormidium autumnale isolates (cyanobacteria). Archives of Microbiology 189: 325–335.
PubMed
Article
CAS
Google Scholar
Palinska, K. A. & W. Surosz, 2008. Population of Aphanizomenon from the Gulf of Gdansk (Southern Baltic Sea): differences in phenotypic and genotypic characteristics. Hydrobiologia 607: 163–173.
Article
CAS
Google Scholar
Palinska, K. A., C. F. Thomasius, J. Marquardt & S. Golubic, 2006. Phylogenetic evaluation of cyanobacteria preserved as historic herbarium exsiccata. International Journal of Systematic and Evolutionary Microbiology 56: 2253–2263.
PubMed
Article
CAS
Google Scholar
Rabenhorst, L., 1873. Algarum europæarum exsiccatarum : (der Algen Europa’s mit Berücksichtigung des ganzen Erdballs). Verlag Dresden Drück von C. Heinrich: 1–235.
Rajaniemi, R., P. Hrouzek, K. Kastovska, R. Willame, A. Rantala, L. Hoffmann, J. Komarek & K. Sivonen, 2005. Phylogenetic and morphological evaluation of the genera Anabaena, Aphanizomenon, Trichormus and Nostoc (Nostocales, Cyanobacteria). International Journal of Systematic and Evolutionary Microbiology 55: 11–26.
PubMed
Article
CAS
Google Scholar
Rippka, R., J. Deruelles, J. B. Waterbury, M. Herdman & R. Y. Stanier, 1979. Generic assignments, strain histories and properties of pure culture of cyanobacteria. Journal of General Microbiology 111: 1–61.
Article
Google Scholar
Rippka, R., T. Coursin, W. Hess, C. Lichtlé, D. J. Scanlan, K. A. Palinska, I. Iteman, F. Partensky, J. Houmard & M. Herdman, 2000. Prochlorococcus
marinus. Chisholm et al. 1992, subsp. nov. pastoris, strain PCC 9511, the first axenic chlorophyll a2b2 marine, chlorophyll b-containing cyanobacterium (Oxyphotobacteria). International Journal of Systematic and Evolutionary Microbiology 50: 1833–1847.
Rudi, K., O. M. Skulberg, F. Larsen & K. S. Jakobsen, 1997. Strain characterization and classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8. Applied and Environment Microbiology 63: 2593–2599.
CAS
Google Scholar
Schloter, M., M. Lebuhn, T. Heulin & A. Hartmann, 2000. Ecology and evolution of bacterial microdiversity. FEMS Microbiology Review 24: 647–660.
Article
CAS
Google Scholar
Sneath, P. H. A. & R. R. Sokal, 1973. Numerical Taxonomy. Freemann, San Francisco: 1–573.
Google Scholar
Sogin, M. L., H. G. Morrison, J. A. Huber, D. M. Welch, S. M. Huse, P. R. Neal, J. M. Arrieta & G. J. Herndl, 2006. Microbial diversity in the deep sea and the under explored ‘‘rare biosphere’’. Proceedings of the National Academy of Sciences 103: 12115–12120.
Article
CAS
Google Scholar
Stackebrandt, E., W. Frederiksen, G. M. Garrity, P. A. D. Grimont, P. Kampfer, M. C. J. Maiden, X. Nesme, R. Rossello-Mora, J. Swings, H. G. Truper, L. Vauterin, A. C. Ward & W. B. Whitman, 2002. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. International Journal of Systematic and Evolutionary Microbiology 52: 1043–1047.
PubMed
Article
CAS
Google Scholar
Stackebrandt, E. & B. M. Goebel, 1994. A place for DNA–DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology 44: 846–849.
Article
CAS
Google Scholar
Stahl, D. A., D. J. Lane, G. J. Olsen & N. R. Pace, 1984. Analysis of hydrothermal vent-associated symbionts by ribosomal-RNA sequences. Science 224: 409–411.
PubMed
Article
CAS
Google Scholar
Stanier, R. Y., W. R. Sistrom, T. A. Hansen, B. A. Whitton, R. W. Castenholz, N. Pfennig, V. N. Gorlenko, E. N. Kondratieva, K. E. Eimhjellen, R. Whittenbury, R. L. Gherna & H. G. Trüper, 1978. Proposal to place the nomenclature of the cyanobacteria (blue-green algae) under the rules of the International Code of Nomenclature of Bacteria. International Journal of Systematic Bacteriology 28: 335–336.
Article
Google Scholar
Starmach, K., 1966. Cyanophyta, Sinice. Flora Slodkowodna Polski, Vol. 2. Polska Akademia Nauk, Warszawa: 1–753.
Steven, B., S. McCann & N. L. Ward, 2012. Pyrosequencing of plastid 23S rRNA genes reveals diverse and dynamic cyanobacterial and algal populations in two eutrophic lakes. FEMS Microbiology Ecology 82: 607–615.
PubMed
Article
CAS
Google Scholar
Stewart, W. D. P., 1985. Nitrogen fixation: differentiating cyanobacteria rearrange their nif genes. Nature 314: 404–405.
Article
Google Scholar
Thuret, G., 1875. Essai de classification des Nostochinées. Annales des Sciences Naturelles (Botanique) 6: 372–382.
Google Scholar
Turner, S., 1997. Molecular systematics of oxygenic photosynthetic bacteria. In Bhattacharya, D. (ed.), The Origin of the Algae and their Plastids. Springer, New York: 13–52.
Chapter
Google Scholar
Urbach, E., D. Robertson & S. W. Chisholm, 1992. Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation. Nature 355: 267–269.
PubMed
Article
CAS
Google Scholar
Vandamme, P., B. Pot, M. Gillis, P. de Vos, K. Kersters & J. Swings, 1996. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiological Reviews 60: 407–438.
PubMed
CAS
PubMed Central
Google Scholar
Waterbury, J. B. & R. Y. Stanier, 1977. Two unicellular cyanobacteria which reproduce by budding. Archives of Microbiology 115: 249–257.
Article
CAS
Google Scholar
Welch, R. A., V. Burland, G. Plunkett III, P. Redford, P. Roesch, D. Rasko, E. L. Buckles, S. R. Liou, A. Boutin, J. Hackett, D. Stroud, G. F. Mayhew, D. J. Rose, S. Zhou, D. C. Schwartz, N. T. Perna, H. L. T. Mobley, M. S. Donnenberg & F. R. Blattner, 2002. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proceedings of the National Academy of Sciences 99: 17020–17024.
Article
CAS
Google Scholar
Whitton, B. A. & M. Potts, 2000. Introduction to the cyanobacteria. In Whitton, B. A. & M. Potts (eds), The Ecology of Cyanobacteria. Kluwer Academic Publishers, Dordrecht: 1–11.
Google Scholar
Wilmotte, A., 1994. Molecular evolution and taxonomy of the cyanobacteria. In Bryant, D. A. (ed.), The Molecular Biology of Cyanobacteria. Kluwer Academic Publishers, Dordrecht: 1–25.
Chapter
Google Scholar
Wilmotte, A. & M. Herdman, 2001. Phylogenetic relationships among the cyanobacteria based on 16S rRNA sequences. In Garrity, G. M. (ed.), Bergey’s Manual of Systematic Bacteriology: 487–493.
Woese, C. R., 1987. Bacterial evolution. Microbiological Reviews 51: 221–271.
PubMed
CAS
PubMed Central
Google Scholar
Woese, C. R. & G. E. Fox, 1977. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proceedings of the National Academy of Sciences 74: 5088–5090.
Article
CAS
Google Scholar
Zehr, J. P., B. D. Jenkins, S. M. Short & G. F. Steward, 2003. Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environmental Microbiology 5: 539–554.
PubMed
Article
CAS
Google Scholar