Abstract
The breeding of crop species relies on the valorisation of ancestral or wild varieties to enrich the cultivated germplasm. The Tunisian date palm genetic patrimony is being threatened by diversity loss and global climate change. We have conducted a genetic study to evaluate the potential of spontaneous coastal resources to improve the currently exploited Tunisian date palm genetic pool. Eighteen microsatellite loci of Phoenix dactylifera L. were used to compare the genetic diversity of coastal accessions from Kerkennah, Djerba, Gabès and continental date palm accessions from Tozeur. A collection of 105 date palms from the four regions was analysed. This study has provided us with an extensive understanding of the local genetic diversity and its distribution. The coastal date palm genotypes exhibit a high and specific genetic diversity. These genotypes are certainly an untapped reservoir of agronomically important genes to improve cultivated germplasm in continental date palm.
Similar content being viewed by others
References
Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Cherif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud JC (2014) In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization and transferability. Appl Plant Sci 2:1300058
Al Dous EK, George B, Al-Mahmoud ME, Al-Jaber MY, Wang H, Salameh YM, Al-Azwani EK (2011) De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera L). Nat Biotechnol 29:521–527
Al-Mssallem IS (1996) Date palm (Phoenix dactylifera L.), vol 7. Encyclopedia Works Publishing & Distribution
Al-Ruqaishi IA, Davey M, Alderson P, Mayes S (2008) Genetic relationships and genotype tracing in date palm (Phoenix dactylifera L.) in Oman based on microsatellite markers. Plant Genet 61:70–72
Arabnezhad H, Bahar M, Reza Mohammadi H, Latifian M (2012) Development; characterization and use of microsatellite markers for germplasm analysis in date palm (Phoenix dactylifera L.). Sci Hortic 134:150–156
Ballardini M, Mercuri A, Littardi C, Abbas S, Couderc M, Ludeña B, Pintaud JC (2013) The chloroplast DNA locus psbZ-trnfM as a potential barcode marker in Phoenix L. (Arecaceae). Zookeys 365:71–82
Barrow S (1998) A monograph of Phoenix L. (Palmae. Coryphoideae). Kew Bull 53:513–575
Ben Salah M (2010) Palmier dattier de l’ile de Kerkennah. VI rencontre européenne du palmier. Sanremo 18–20 novembre 2010
Billotte N, Marseillac N, Brottier P, Noyer JL, Jacquemoud-Collet J, Moreau C, Couvreur T, Chevallier MH, Pintaud JC, Risterucci AM (2004) Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.). Characterization and utility across the genus Phoenix and in other palm genera. Mol Ecol Notes 4:256–258
Bodian A, Nachtigall M, Frese L, Elhoumaizi MA, Hasnaoui A, Ndir KN, Sané D (2014) Genetic diversity analysis of date palm (Phoenix dactylifera L.) cultivars from Morocco using SSR markers. J Biodivers Biopros Dev 126: doi:10.4172/ijbbd.1000126
Chakraborty R, Jin LA (1993) Unified approach to study hypervariable polymorphisms statistical considerations of determining relatedness and population distances. In: Pena SDJ, Chakraborty R, Epplen JT, Jeffreys AJ (eds) DNA fingerprinting: state of the science. Birkhäuser Verlag, Basel, pp 153–175
Chaluvadi SR, Khanam S, Aly MAM, Bennetzen JL (2014) Genetic diversity and population structure of native and introduced date palm (Phoenix dactylifera L.) germplasm in the United Arab Emirates. Tropical Plant Biol 7:30–41
Elshibli S, Korpelainen H (2008) Microsatellites markers reveal high genetic diversity in date palm (Phoenix dactylifera L.) germplasm from Sudan. Genetica 134:251–260
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE. A simulation study. Mol Ecol 14:261–2620
Henderson S, Billotte N, Pintaud JC (2006) Genetic isolation of Cape Verde Island Phoenix atlantica (Arecaceae) revealed by microsatellite markers. Conserv Genet 7:213–223
Jakobsson M, Rosenberg NA (2007) CLUMPP: cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801–1806
Khierallah HSM, Bader SM, Baum M, Hamwieh A (2011) Genetic diversity of Iraqi date palms revealed by microsatellite polymorphism. J Am Soc Hort Sci 136:282–287
Liu K, Muse SV (2005) PowerMarker. Integrated analysis environment for genetic marker data. Bioinformatics 9:2128–2129
Ludeña B, Chabrillange N, Aberlenc-Bertossi F, Adam H, Tregear JW, Pintaud JC (2011) Phylogenetic utility of the nuclear genes Agamous 1 and phytochrome B in palms (Arecaceae): an example within Bactridinae. Ann Bot 108:1433–1444
Peakall R, Smouse PE (2006) GENALEX 6. Genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295
Peakall R, Smouse PE, GenAlEx 6.5. (2012) Genetic analysis in Excel. Population genetic software for teaching and research an update. Bioinform Appl Notes 28:2537–2539
Pintaud JC, Zehdi S, Couvreur T, Barrow S, Henderson S, Aberlenc-Bertossi F, Tregear J, Billotte N (2010) Species delimitation in the genus Phoenix (Arecaceae) based on SSR markers with emphasis on the identity of the date palm (Phoenix dactylifera L.). In: Seberg O, Petersen G, Barfod A, Davis J (eds) Diversity, phylogeny and evolution in the monocotyledons. Aarhus University Press, Aarhus, pp 267–286
Pintaud JC, Ludeña B, Zehdi S, Gros-Balthazard M, Ivorra S, Terral JF, Newton C, Tengberg M, Abdoulkader S, Daher A, Nabil M, Saro Hernández N, González-Pérez MA, Sosa P, Santoni S, Moussouni S, Si-Dehbi F, Boughedoura N (2013) Biogeography of the date palm (Phoenix dactylifera L.; Arecaceae) insights on the origin and on the structure of modern diversity. Acta Hortic 99:19–36
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959
Racchi ML, Bove A, Turchi A, Bashir G, Battaglia M, Camussi A (2014) Genetic characterization of Libyan date palm resources by microsatellite markers. 3 Biotech 4:21–32
Raymond M, Rousset F (1995) GENEPOP (ver1.2). A population genetics software for exact test and ecumenicism. J Hered 86:248–249
Rhouma A (1994) Le palmier dattier en Tunisie. I. le patrimoine génétique, Arabesque: Tunisie
Rhouma S, Zehdi-Azouzi S, Ould Mohamed Salem A, Rhouma A, Marrakchi M, Trifi MAFLP (2007) Markers for genetic diversity analysis in Tunisian date palm (Phoenix dactylifera L.) accessions. J Hortic Sci Biotechnol 82:929–933
Rhouma-Chatti S, Choulak S, Zehdi-Azouzi S, Chatti K, Said K (2014) Molecular polymorphism and phylogenetic relationships within Tunisian date palm (Phoenix dactylifera L.): evidence of non-coding trnL-trnF regions of chloroplast DNAs. Sci Hortic 170:32–38
Rosenberg NA (2004) DISTRUCT. A program for the graphical display of population structure. Mol Ecol Notes 4:137–138
Sakka H, Baraket G, Dakhlaoui Dkhil S, Zehdi Azouzi S, Salhi-Hannachi A (2013) Chloroplast DNA analysis in Tunisian date-palm cultivars (Phoenix dactylifera L.): sequence variations and molecular evolution of trnL (UAA) intron and trnL (UAA) trnF (GAA) intergenic spacer. Sci Hortic 164:256–269
Weir BS, Cockerham C (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370
Zehdi S, Trifi M, Billotte N, Marrakchi M, Pintaud JC (2004) Genetic diversity of Tunisian date palms (Phoenix dactylifera L.) revealed by nuclear microsatellite polymorphism. Hereditas 141:278–287
Zehdi S, Cherif E, Rhouma S, Santoni S, Salhi Hannachi A, Pintaud JC (2012) Molecular polymorphism and genetic relationships in date palm (Phoenix dactylifera L.). The utility of nuclear microsatellite markers. Sci Hortic 148:255–263
Zehdi-Azouzi S, Cherif E, Moussouni S, Gros-Balthazard M, Abbas Naqvi S, Ludeña B, Castillo K, Chabrillange N, Bouguedoura N, Bennaceur M, Si-Dehbi F, Abdoulkader S, Daher A, Terral JF, Santoni S, Ballardini M, Mercuri A, Bensalah M, Kadri K, Othmani A, Littardi C, Salhi-Hannachi A, Pintaud JC, Aberlenc-Bertossi F (2015) Genetic structure of the date palm (Phoenix dactylifera L.) in the Old World reveals a strong differentiation between eastern and western populations. Ann Bot 116:101–112
Zohary D, Spiegel-Roy P (1975) Beginnings of fruit growing in the Old World. Science 187:319–327
Acknowledgments
We thank Abdelmajid Rhouma for kindly providing date palm leaf material. This work was financed by the AUF MeRSi project (6313PS001), the Tunisian Ministère de l’Enseignement Supérieur et de la Recherche Scientifique. This study has been made possible by grant NPRP-EP X-014-4-001 from the Qatar National Research Fund (a member of the Qatar Foundation). In memory of our colleague Jean-Christophe Pintaud who preciously contributed to this work.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflicts of interest
The authors declare no conflict of interest.
Rights and permissions
About this article
Cite this article
Zehdi-Azouzi, S., Cherif, E., Guenni, K. et al. Endemic insular and coastal Tunisian date palm genetic diversity. Genetica 144, 181–190 (2016). https://doi.org/10.1007/s10709-016-9888-z
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10709-016-9888-z