Skip to main content

Advertisement

Log in

Associations of PCR markers with freezing tolerance and photosynthetic acclimation to cold in winter barley

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

Associations of PCR markers with freezing tolerance and acclimation of photosynthetic apparatus to cold were tested on 28 winter barley cultivars and advanced breeding forms to select alleles for practical application in marker assisted selection (MAS). We found significant associations between freezing tolerance evaluated with field-laboratory method (FLM) and markers located on 5H chromosome in region of gene Fr-H2 (bin9-10: Xbmag812, Xmwg2230) and region of gene Fr-H1 (bin11: Xmwg514, HvBM5, Xmwg644). Additionally, significant associations with photochemical quenching of chlorophyll a fluorescence (qP) were found for PCR markers Xpsr115 and Xmwg2062. In our study variation in the promoter region of Vrn-H1 (HvBM5) was directly connected with freezing tolerance of plants partially de-acclimated in the field. The results obtained here showed that different loci of freezing tolerance may play role in variable selection pressure of winter conditions.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Cattivelli L, Baldi P, Crosatti C, Di Fonzo N, Faccioli P, Grossi M, Mastrangelo AM, Pecchioni N, Stanca AM (2002) Chromosome regions and stress-related sequences involved in resistance to abiotic stress in Triticeae. Plant Mol Biol 48:649–665

    Article  CAS  Google Scholar 

  • Chalhoub BA, Thibault S, Laucou V, Rameau C, Höfte H, Cousin R (1997) Silver staining and recovery of AFLP™ amplification products on large denaturing polyacrylamide gels. BioTechniques 22:216–220

    CAS  PubMed  Google Scholar 

  • Choi DW, Rodriguez EM, Close TJ (2002) Barley Cbf3 gene identification, expression pattern, and map location. Plant Physiol 129:1781–1787

    Article  CAS  PubMed  Google Scholar 

  • Comadran J, Thomas WTB, van Eeuwijk FÁ, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A, Ouabbou H, Bort J, Romagosa I, Hackett CA, Russell JR (2009) Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theor Appl Genet 119:175–187

    Article  CAS  PubMed  Google Scholar 

  • De Riek J, Calsyn E, Everaert I, Van Bockstaele E, De Loose M (2001) AFLP based alternatives for the assessment of distinctness, uniformity and stability of sugar beet varieties. Theor Appl Genet 103:1254–1265

    Article  Google Scholar 

  • Doll H, Haahr V, Sogard B (1989) Relationship between vernalization requirement and winter hardiness in doubled haploids of barley. Euphytica 42:209–1213

    Google Scholar 

  • Fowler DB, Limin AE (2004) Interactions among factors regulating phenological development and acclimation. Ann Bot 94:717–724

    Article  CAS  PubMed  Google Scholar 

  • Fowler DB, Limin AE, Wang S, Ward RW (1996) Relationship between low-temperature tolerance and vernalization response in wheat and rye. Can J Plant Sci 76:37–42

    Google Scholar 

  • Francia E, Rizza F, Cattivelli L, Stanca AM, Galiba G, Tóth B, Hayes PM, Skinner JS, Pecchioni N (2004) Two loci on chromosome 5H determine low–temperature tolerance in a ‘Nure’ (winter) × ‘Tremois’ (spring) barley map. Theor Appl Genet 108:670–680

    Article  CAS  PubMed  Google Scholar 

  • Francia E, Barabaschi D, Tondelli A, Laidò G, Rizza F, Stanca AM, Busconi M, Fogher C, Stockinger EJ, Pecchioni N (2007) Fine mapping of a HvCBF gene cluster at the frost resistance locus Fr-H2 in barley. Theor Appl Genet 115:1083–1091

    Article  CAS  PubMed  Google Scholar 

  • Hall TA (1999) BioEdit: a user–friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Hayes PM, Blake TK, Chen THH, Tragoonrung S, Chen F, Pan A, Liu B (1993) Quantitative trait loci on barley (Hordeum vulgare) chromosome 7 associated with components of winterhardiness. Genome 36:66–71

    Article  CAS  PubMed  Google Scholar 

  • Hömmo LM (1994) Hardening of some winter wheat (Triticum aestivum L.), Triticale (Triticosecale Wittmack) and winter barley (Hordeum vulgare L.) cultivars during autumn and the final winter survival in Finland. Plant Breed 112:285–293

    Article  Google Scholar 

  • Huner NPA, Öquist G, Hurry VM, Krol M, Falk S, Griffith M (1993) Photosynthesis, photoinhibition and low temperature acclimation in cold tolerant plants. Photosynth Res 37:19–39

    Article  CAS  Google Scholar 

  • Kalberer SR, Wisniewski M, Arora R (2006) Deacclimation and reacclimation of cold-hardy plants: current understanding and emerging concepts. Plant Sci 171:3–16

    Article  CAS  Google Scholar 

  • Lincoln SE, Daly MJ, Lander ES (1991) PRIMER: a computer program for automatically selecting PCR primers. MIT Center for Genome Research and Whitehead Institute for Biomedical Research, Cambridge, USA

    Google Scholar 

  • Mesfin A, Smith KP, Dill-Macky R, Evans CK, Waugh R, Gustus CD, Muehlbauer GJ (2003) Quantitative trait loci for Fusarium Head Blight resistance in barley detected in a two-rowed by six-rowed population. Crop Sci 43:307–318

    Article  CAS  Google Scholar 

  • Milligan BG (1992) Plant DNA isolation. In: Hoelzel AR (ed) Molecular genetic analysis of populations: a practical approach. IRL Press, Oxford, UK, pp 59–88

    Google Scholar 

  • Pan A, Hayes PM, Chen F, Chen THH, Blake T, Wright S, Karsai I, Bedö Z (1994) Genetic analysis of components of winterhardiness in barley (Hordeum vulgare L.). Theor Appl Genet 89:900–910

    Article  CAS  Google Scholar 

  • Rapacz M (2002) Cold-deacclimation of oilseed rape (Brassica napus var. oleifera) in response to fluctuating temperatures and photoperiod. Ann Bot 89:543–549

    Article  CAS  PubMed  Google Scholar 

  • Rapacz M (2007) Chlorophyll a fluorescence transient during freezing and recovery in winter wheat. Photosynthetica 45:409–418

    Article  CAS  Google Scholar 

  • Rapacz M, Woźniczka A (2009) A selection tool for freezing tolerance in common wheat using the fast chlorophyll a fluorescence transient. Plant Breed 128:227–234

    Article  Google Scholar 

  • Rapacz M, Gąsior D, Zwierzykowski Z, Leśniewska–Bocianowska A, Humphreys MW, Gay AP (2004) Changes in cold tolerance and the mechanisms of acclimation of photosystem II to cold hardening generated be anther culture of Festuca pratensis × Lolium multiflorum cultivars. New Phytol 161:105–114

    Article  Google Scholar 

  • Rapacz M, Tyrka M, Kaczmarek W, Gut M, Wolanin B, Mikulski W (2008a) Photosynthetic acclimation to cold as a potential physiological marker of winter barley freezing tolerance assessed under variable winter environment. J Agron Crop Sci 194:61–71

    Article  Google Scholar 

  • Rapacz M, Wolanin B, Hura K, Tyrka M (2008b) The effect of cold acclimation on photosynthetic apparatus and the expression of COR14b in four genotypes of barley (Hordeum vulgare) contrasting in their tolerance to freezing and high light treatment in cold. Ann Bot 101:689–699

    Article  CAS  PubMed  Google Scholar 

  • Rohlf FJ (2001) NTSYS-pc numerical taxonomy and multivariate analysis system, Ver. 2.10q. Exeter Publishing Ltd., Setauket, NY

    Google Scholar 

  • Rostoks N, Mudie S, Cardle L, Russell J, Ramsay L, Booth A, Svensson JT, Wanamaker SI, Walia H, Rodriguez EM, Hedley PE, Liu H, Morris J, Close TJ, Marshall DF, Waugh R (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Mol Gen Genomics 274:515–527

    Article  CAS  Google Scholar 

  • Skinner JS, Szűcs P, von Zitzewitz J, Marquez-Cedillo L, Filichkin T, Stockinger EJ, Thomashow MF, Chen THH, Hayes PM (2006) Mapping of barley homologs to genes that regulate low temperature tolerance in Arabidopsis. Theor Appl Genet 112:832–842

    Article  CAS  PubMed  Google Scholar 

  • Szűcs P, Karsai I, von Zitzewitz J, Mészáros K, Cooper LLD, Gu YQ, Chen THH, Hayes PM, Skinner JS (2006) Positional relationships between photoperiod response QTL and photoreceptor and vernalization genes in barley. Theor Appl Genet 112:1277–1285

    Article  PubMed  Google Scholar 

  • Szűcs P, Skinner JS, Karsai I, Cuesta-Marcos A, Haggard KG, Corey AE, Chen THH, Hayes PM (2007) Validation of the VRN-H2/VRN-H1 epistatic model in barley reveals that intron length variation in VRN-H1 may account for a continuum of vernalization sensitivity. Mol Genet Genomics 277:249–261

    Article  PubMed  Google Scholar 

  • Tondelli A, Francia E, Barabaschi D, Aprile A, Skinner JS, Stockinger EJ, Stanca AM, Pecchioni N (2006) Mapping regulatory genes as candidates for cold and drought stress tolerance in barley. Theor Appl Genet 112:445–454

    Article  CAS  PubMed  Google Scholar 

  • Tóth B, Francia E, Rizza F, Stanca AM, Galiba G, Pecchioni N (2004) Development of PCR-based markers on chromosome 5H for assisted selection of frost-tolerant genotypes in barley. Mol Breed 14:265–273

    Article  Google Scholar 

  • Varshney RK, Marcel TC, Ramsay L, Russell J, Röder MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theor Appl Genet 114:1091–1103

    Article  CAS  PubMed  Google Scholar 

  • Weber JL (1990) Informativeness of human (dC–dA)n (dG–dT)n polymorphisms. Genomics 7:524–530

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

The studies were funded by Polish Ministry of Science and Higher Education Grant 2 P06A 002 28.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to M. Rapacz.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 87 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Rapacz, M., Tyrka, M., Gut, M. et al. Associations of PCR markers with freezing tolerance and photosynthetic acclimation to cold in winter barley. Euphytica 175, 293–301 (2010). https://doi.org/10.1007/s10681-010-0127-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10681-010-0127-x

Keywords

Navigation