Skip to main content
Log in

Originality of M3S maize population and changes in allele frequencies revealed by SSR markers after two cycles of selfed progeny recurrent selection

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

Maksimir 3 Synthetic (M3S) maize population was developed at the Faculty of Agriculture University of Zagreb by intercrossing inbred lines, whose origins trace back to several open-pollinated varieties and local populations from different regions of the former Yugoslavia. The population was subjected to two cycles of selfed progeny recurrent selection for grain yield. The objectives of this study were: (i) to determine genetic distances among the parental inbred lines of the M3S population (M3S progenitors), the M3S population before and after two cycles of recurrent selection, and elite inbred lines representing the BSSS and Lancaster heterotic group; and (ii) to examine the effect of two cycles of recurrent selection on allele frequency changes in the population. Nine M3S progenitors, three BSSS lines, and three Lancaster lines were genotyped at 24 SSR loci, out of which nine randomly chosen loci were used for genotyping 96 individuals from both C0 (the M3S population before selection) and from C2 (M3S population after two cycles of selection). A total of 101 alleles were detected across 24 loci in the 15 lines, whereas 83 alleles were found in the nine M3S progenitors. Among the latter 83 alleles 31 were unique, i.e. found only in one of the progenitors. Mean genetic distance among nine M3S progenitors was 0.61 indicating a broad genetic base of the M3S population. High mean genetic distance was found between M3S progenitors and BSSS lines (0.69) and M3S progenitors and Lancaster lines (0.71). This indicates that the M3S population represents a germplasm source unrelated to both the BSSS and Lancaster germplasm. Mean genetic distance between the M3S population and BSSS as well as Lancaster lines decreased slightly after two cycles of recurrent selection suggesting the need to introduce testers from both groups in future selection in the M3S population in order to maintain heterotic complementarity of the M3S population to these groups. A test of selective neutrality identified several non-neutral loci in the population whose allele frequency changes from the C0 to the C2 cannot be explained by genetic drift. The majority of non-neutral alleles, whose frequency increased after two cycles of selection, were present in at least one line from the BSSS or Lancaster heterotic group.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Ajmone-Marsan P, Castiglioni P, Fusari F, Kuiper M, Motto M (1998) Genetic diversity and its relationship to hybrid performance in maize, as revealed by RFLP and AFLP markers. Theor Appl Genet 96:219–227

    Article  Google Scholar 

  • Choukan R, Warburton ML (2005) Use of SSR data to determine relationships among early maturing Iranian maize inbred lines. Maydica 20:163–170

    Google Scholar 

  • Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15

    Google Scholar 

  • Dubreuil P, Charcosset A (1998) Genetic diversity within and among maize populations: a comparison between isozyme and nuclear RFLP loci. Theor Appl Genet 96:577–587

    Article  CAS  Google Scholar 

  • Dubreuil P, Charcosset A (1999) Relationships among maize inbred lines and populations from European and North-American origins as estimated using RFLP markers. Theor Appl Genet 99:473–480

    Article  CAS  Google Scholar 

  • Dubreuil P, Dufour P, Krejci E, Causse M, de Vienne D, Gallais A, Charcosset A (1996) Organization of RFLP diversity among inbred lines for maize representing the most significant heterotic groups. Crop Sci 36:790–799

    Article  Google Scholar 

  • Gauthier P, Gouesnard B, Dallard J, Redaelli R, Rebourg C, Charcosset A, Boyat A, (2002) RFLP diversity and relationships among traditional European maize populations. Theor Appl Genet 105:91–99

    Article  PubMed  CAS  Google Scholar 

  • Goodman MM (1985) Exotic maize germplasm: status, prospects, and remedies. Iowa State J Res 59:497–527

    Google Scholar 

  • Heredia-Diaz O, Alsirt A, Darrah EH, Coe EH (1996) Allelic frequency changes in the MoSCSS maize synthetic in response to bi-directional recurrent selection for rind penetrometer resistance. Maydica 41:65–76

    Google Scholar 

  • Hinze LL, Kresovich S, Nason JD, Lamkey KR (2005) Population genetic diversity in a maize reciprocal recurrent selection program. Crop Sci 45:2435–2442

    Article  CAS  Google Scholar 

  • Labate JA, Lamkey KR, Lee M, Woodman WL (1999) Temporal changes in allele frequencies in two reciprocally selected maize populations. Theor Appl Genet 99:1166–1178

    Article  Google Scholar 

  • Li Y, J Du, Wang T, Shi Y, Song Y, Jia J (2002) Genetic diversity and relationships among Chinese maize inbred lines revealed by SSR markers. Maydica 47:93–101

    Google Scholar 

  • Liu K, Goodman M, Muse S, Smith JS, Buckler E, Doebly J (2003) Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics 165:2117–2128

    PubMed  CAS  Google Scholar 

  • Lu H, Bernardo R (2001) Molecular marker diversity among current and historical maize inbreds. Theor Appl Genet 103:613–617

    Article  CAS  Google Scholar 

  • Melchinger AE, Lee M, Lamkey KR, Hallauer AR, Woodman WL (1990) Genetic diversity for restriction fragment length polymorphisms and heterosis for two diallel sets of maize inbreds. Theor Appl Genet 80:488–496

    Article  Google Scholar 

  • Messmer MM, Melchinger AE, Lee M, Woodman WL, Lee EA, Lamkey KR (1991) Genetic diversity among progenitors and lines from the Iowa Stiff Stalk Synthetic (BSSS) maize population: comparison of allozyme and RFLP data. Theor Appl Genet 83:97–107

    Article  Google Scholar 

  • Mumm RH, Dudley JW (1994) A classification of 148 U.S. maize inbreds: I. cluster analysis based on RFLPs. Crop Sci 34:842–851

    Article  Google Scholar 

  • Nei M, Li W (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269–5273

    Article  PubMed  CAS  Google Scholar 

  • Nei M (1972) Genetic distance between populations. Am Nat 106:283–292

    Article  Google Scholar 

  • Pejić I (1992) Heterotična komplementarnost i genetska varijabilnost domaće germplazme kukuruza. Poljoprivredna znanstvena smotra 3–4:335–35

    Google Scholar 

  • Pejić I, Ajmone-Marsan P, Morgante M, Kozumplik V, Castiglioni G, Taramino G, Motto M (1998) Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs. Theor Appl Genet 97:1248–1255

    Article  Google Scholar 

  • Reif JC, Xia XC, Melchinger AE, Warburton ML, Hosington DA, Bbeck D, Bohn M, Frisch M (2004) Genetic diversity determined within and among CIMMYT maize populations of troppical, subtropical, and temperate germplasm by SSR markers. Crop Sci 44:326–334

    Article  CAS  Google Scholar 

  • Revilla P, Malvar RA, Cartea ME, Soengas P, Ordas A (2002) Heterotic relationships among European maize inbreds. Euphytica 126:259–264

    Article  Google Scholar 

  • Rholf FJ (2000) NTSYS-pc. Numerical taxonomy and multivariate analysis system, version 2.1. Exter Publications, NY

    Google Scholar 

  • Ron Para J, Hallauer AR (1997) Utilization of exotic maize germplasm. Plant Breed Rev 14:165–187

    Google Scholar 

  • Rossini Pinto L, Carneiro Vieira ML, Lopes de Souza C Jr, Pereira de Souza A (2003) Genetic-diversity assessed by microsatellites in tropical maize populations submitted to a high-intensity reciprocal recurrent selection. Euphytica 134:277–286

    Article  CAS  Google Scholar 

  • Sánchez JJ, Goodman MM, McK Bird R, Stuber CW (2006) Isozyme and morphological variation in maize of five Andean countries. Maydica 51:25–42

    Google Scholar 

  • Šarčević H, Pejić I, Barić M, Kozumplik V (2004) Performance and inbreeding depression of an exotic maize population under selfed progeny recurrent selection. Die Bodenkultur 55:37–43

    Google Scholar 

  • Schrag TA, Melchinger AE, Sørensen AP, Frisch M (2006) Prediction of single-cross hybrid performance for grain yield and grain dry matter content in maize using AFLP markers associated with QTL. Theor Appl Genet 113:1037–1047

    Article  PubMed  CAS  Google Scholar 

  • Senior ML, Murphy JP, Goodman MM, Stuber CV (1998) Utility of SSRs for determining genetic similarities and relationship in maize using agarose gel system. Crop Sci 38:1088–1098

    Article  Google Scholar 

  • Smith JSC, Chin ECL, Shu H, Smith OS, Wall SJ, Senior ML, Mitchell SE, Kresovich S, Ziegle J (1997) An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.) Comparison with data from RFLPs and pedigree. Theor Appl Genet 95:163–173

    Article  CAS  Google Scholar 

  • Smith JSC, Smith OS, Wright S, Wall SJ, Walton M (1992) Diversity of U.S. hybrid maize germplasmas revealed by restriction fragment length polymorphisms. Crop Sci 32:598–604

    Article  CAS  Google Scholar 

  • Sprague GF, Eberhart SA (1977) Corn Breeding. In: Sprague, GF (ed) Corn and corn Improvement , American Society of Agronomists, Madison, Wis., USA

  • Stuber CW (1978) Exotic sources for broadening genetic diversity in corn breeding programs. Ann Corn Sorghum Res Conf Proc 33:34–47

    Google Scholar 

  • Stuber CW, Moll RH, Goodman MM, Schaffer HE, Weir BS (1980) Allozyme frequency changes associated with selection for increased grain yield in maize (Zea mays L.). Genetics 95:225–236

    PubMed  CAS  Google Scholar 

  • Tallury SP, Goodman MM (1999) Experimental evaluation of the potential of tropical germplasm for temperate maize improvement. Theor Appl Genet 98:54–61

    Article  Google Scholar 

  • Vigouroux Y, Jaqueth JS, Msmith J, Beavis WD, Stephen J, Smith C, Doebly J (2002) Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol 19(8):1251–1260

    PubMed  CAS  Google Scholar 

  • Waples RS (1989) Temporal variation in allele frequencies: testing the right hypothesis. Evolution 43:1236–1251

    Article  Google Scholar 

  • Warburton ML, Xianchun X, Crossa J, Franco J, Melchinger AE, Frisch M, Bohn M, Hoisington D (2002) Genetic characterisation of CIMMYT inbred maize lines and open pollinated populations using large scale fingerprinting methods. Crop Sci 42:1832–1840

    Article  Google Scholar 

  • Xia XC, Reif JC, Hoisington DA, Melchinger AE, Frisch M, Warburton ML (2004) Genetic diversity among CIMMYT maize inbred lines investigated with SSR markers: I. Lowland tropical maize. Crop Sci 44:2230–2237

    Article  Google Scholar 

  • Yeh FC, Boyle TJB (1997) POPGENE Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg J Botany 129:157

    Google Scholar 

Download references

Acknowledgement

We would like to thank B.R. Christie for critical reading the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hrvoje Šarčević.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Šarčević, H., Pejić, I., Barić, M. et al. Originality of M3S maize population and changes in allele frequencies revealed by SSR markers after two cycles of selfed progeny recurrent selection. Euphytica 161, 97–105 (2008). https://doi.org/10.1007/s10681-007-9450-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10681-007-9450-2

Keywords

Navigation