Skip to main content
Log in

Development of a genetic marker linked to a new thermo-sensitive male sterile gene in rice (Oryza sativa L.)

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

Application of the thermo-sensitive genic male sterile (TGMS) system has a great potential to increase the efficiency of hybrid rice breeding. An indica rice TGMS mutant, 0A15-1, was crossed with a fertile indica line “Guisi-8” to map the gene responsible to the TGMS. A RAPD (random amplified polymorphic DNA) maker, S187-770, linked to the TGMS gene at a distance of 1.3 cM in coupling phase was identified. The S187-770 was then cloned and sequenced to develop a dominant SCAR (sequence characterized amplified region) marker. Homology search against rice genome DNA sequence database indicated that S187-770 located on the short arm of chromosome 3 and close to centromere as a single copy sequence. This SCAR marker can be used in the marker-assisted transfer of this gene to different genetic background. As no other TGMS gene has been mapped on rice chromosome 3, the gene from 0A15-1 is a new TGMS gene and tentatively designated tms6(t).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Bernatzky, R. & S.D. Tanksly, 1986. Genetics of actin-related sequences in tomato. Theor Appl Genet 72: 312–321.

    Google Scholar 

  • Dong, N.V., P.K. Subudhi, P.N. Luong, V.D. Quang, T.D. Quy, H.G. Zheng, B. Wang & H.T. Nguyen, 2000. Molecular mapping of a rice gene conditioning thermosensitive genic male sterility using AFLP, RFLP and SSR techniques. Theor Appl Genet 100: 727–734.

    Google Scholar 

  • Gustafson, J.P. & J.E. Dille, 1992. Chromosome location of Oryza sativa recombination linkage groups. Proc Natl Acad Sci USA 89: 8646–8650.

    Google Scholar 

  • Hanada, H. & M. Hirai, 2003. Development of a genetic marker linked to the tendril trait of sweat pea (Lathyrus odoratus L.). Breed Sci 53: 7–13.

    Google Scholar 

  • Jia, J.H., C.Y. Li, X.P. Qu, Q. Wang, Q.Y. Deng, M.L. Weng, L.P. Yuan & B. Wang, 2000. Constructing a genetic linkage map and mapping a new thermo-sensitive genic male-sterile gene (tms5) in rice. In: Abstr 1st Natl Plant Genome Meet China. Dalian, China, p. 37.

  • Jia, J.H., D.S. Zhang, C.Y. Li, X.P. Qu, S.W. Wang, V. Chamarerk, H.T. Nguyen & B. Wang, 2001. Molecular mapping of the reverse thermo-sensitive genic male-sterile gene (rtms1) in rice. Theor Appl Genet 103: 607–612.

    Google Scholar 

  • Koh, H.J., Y.H. Son, M.H. Heu, H.S. Lee & S.R. McCouch, 1999. Molecular mapping of a new genic male-sterility gene causing chalky endosperm in rice (Oryza sativa L.). Euphytica 106: 57–62.

    Google Scholar 

  • Lincoln, S., M. Daly & E. Lander, 1992. Constructing genetic maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report. 3rd Edition, Whitehead Institute, Cambridge, Mass, USA.

    Google Scholar 

  • Liu, Y.G., H.M. Liu, L. Chen, W. Qiu, Q. Zhang, H. Wu, C. Yang, J. Su, Z. Wang, D. Tian & M. Mei, 2002. Development of new transformation-competent artificial chromosome vectors and rice genomic libraries for efficient gene cloning. Genetics 282: 247–255.

    Google Scholar 

  • Ma, Z.R., C.H. Wang, W. Liu & D.H. Ling, 2002. Somaclonal variation of cytoplasmic male sterile lines with wild rice cytoplasm II. Somaclonal thermo-sensitive genic male sterile mutation. Journal of Tropical and Subtropical Botany 10: 313–320.

    Google Scholar 

  • Maclean, J.L., D.C. Dawe, B. Hardy, G.P. Hettel, 2002. Rice almanac, p35. Los Banos (Philippines): International Rice Research Institute, Bouake (cote d’Ivoire):West Africa Rice Development Association, Cali (Colombia): International Center for Tropical Agriculture, Rome (Italy): Food Agriculture Orgnization.

  • Maruyama, K., H. Araki & H. Kato, 1991. Thermosensitive genetic male sterility induced by irradiation. Rice Genetics II. IRRI. Manila, Philippines 227–232.

  • Michelmore, R.W., I. Paaran & K.V. Kesseli, 1991. Identification of markers linked to disease resistance gens by bulked segregant analysis: A rapid method to detect markers in specific genomic regions bu using segregating populations. Proc Natl Acad Sci USA 88: 9828–9832.

    CAS  PubMed  Google Scholar 

  • Subudhi, P.K., R.P. Borkakati, S.S. Virmani & N. Huang, 1997. Molecular mapping of a thermosensitive genetic male sterile gene in rice using bulked segregant analysis. Genome 40: 188–194.

    Google Scholar 

  • Wang, B., W.W. Xu, J.Z. Wang, W. Wu, H.G. Zheng, Z.Y. Yang, N. Huang, J.D. Ray & H.T. Nguyen, 1995. Tagging and mapping the thermo-sensitive genic male-sterile gene in rice with molecular markers. Theor Appl Genet 91: 1111–1114.

    Google Scholar 

  • Williams, J.G., A.R. Kubelik, K.J. Livak, J.A. Rafalski & S.V. Tingey, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531–6535.

    CAS  PubMed  Google Scholar 

  • Yamaguchi, Y., R. Ikeda, H. Hirasawa, M. Minami & P. Ujihara, 1997. Linkage analysis of the thermo-sensitive genic male sterility gene tms2 in rice (Oryza sativa L.). Breed Sci 47: 371–377.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wang, C., Zhang, P., Ma, Z. et al. Development of a genetic marker linked to a new thermo-sensitive male sterile gene in rice (Oryza sativa L.). Euphytica 140, 217–222 (2004). https://doi.org/10.1007/s10681-004-3360-3

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10681-004-3360-3

Key words

Navigation