Abstract
Managers of aquatic resources benefit from indices of habitat quality that are reproducible and easy to measure, demonstrate a link between habitat quality and biota health, and differ between human-impacted (i.e., managed) and reference (i.e., nonimpacted or minimally impacted) conditions. The instability index (ISI) is an easily measured index that describes the instability of a streambed by relating the tractive force of a stream at bankfull discharge to the median substrate size. Previous studies have linked ISI to biological condition but have been limited to comparisons of sites within a single stream or among a small number of streams. We tested ISI as an indicator of human impact to habitat and biota in mountain streams of the northwestern USA. Among 1428 sites in six northwestern states, ISI was correlated with other habitat measures (e.g., residual pool depth, percent fine sediment) and indices of biotic health (e.g., number of intolerant macroinvertebrate taxa, fine sediment biotic index) and differed between managed and reference sites across a range of stream types and ecoregions. While ISI could be useful in mountain streams throughout the world, this index may be of particular interest to aquatic resource managers in the northwestern USA where a large dataset, from which ISI can be calculated, exists.
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Al-Chokhachy, R., Roper, B. R., & Archer, E. K. (2010). Evaluating the status and trends of physical stream habitat in headwater streams within the interior Columbia River and upper Missouri River basins using an index approach. Transactions of the American Fisheries Society, 139, 1041–1059.
Archer, E. K., Scully, R. A., Henderson, R., Roper, B. B., & Heitke, J. D., (2012). Effectiveness monitoring for streams and riparian areas: Sampling protocol for stream channel attributes. http://www.fs.fed.us/biology/nsaec/assets/archeretal_2012_pibo_stream_sampling_protocol.pdf. Accessed 20 Feb 2014.
Bilby, R. E., & Ward, J. W. (1989). Changes in characteristics and function of woody debris with increasing size of streams in western Washington. Transactions of the American Fisheries Society, 118, 368–378.
Bramblett, R. G., Johnson, T. R., Zale, A. V., & Heggem, D. G. (2005). Development and evaluation of a fish assemblage index of biotic integrity for northwestern Great Plains streams. Transactions of the American Fisheries Society, 134, 624–640.
Cain, D. J., Luoma, S. N., Carter, J. L., & Fend, S. V. (1992). Aquatic insects as bioindicators of trace element contamination in cobble-bottom rivers and streams. Canadian Journal of Fisheries and Aquatic Sciences, 49, 2141–2154.
Cobb, D. G., & Flannagan, J. F. (1990). Trichoptera and substrate stability in the Ochre River, Manitoba. Hydrobiologia, 206, 29–38.
Cross, D., & Everest, L. (1995). Fish habitat attributes of reference and managed watersheds with special reference to the location of bull charr (Salvelinus confluentus) spawning sites in the upper Spokane River Ecosystem, northern Idaho. FHR Currents, Fish Habitat Relationships Technical Bulletin No. 17, USDA Forest Service.
Death, R. G., & Winterbourn, M. J. (1994). Environmental stability and community persistence: a multivariate perspective. Journal of the North American Benthological Society, 13, 125–139.
Death, R. G., & Winterbourn, M. J. (1995). Diversity patterns in stream benthic invertebrate communities: the influence of habitat stability. Ecology, 76, 1446–1460.
Dingman, S. L. (1984). Fluvial hydrology. New York: W.H. Freeman.
Dodds, W. K., & Oakes, R. M. (2008). Headwater influences on downstream water quality. Environmental Management, 41, 367–377.
Duncan, M. J., Suren, A. M., & Brown, S. L. (1999). Assessment of streambed stability in steep, bouldery streams: development of a new analytical technique. Journal of the North American Benthological Society, 445–456.
Faustini, J. M., & Jones, J. A. (2003). Influence of large woody debris on channel morphology and dynamics in steep, boulder-rich mountain streams, western Cascades, Oregon. Geomorphology, 51, 187–205.
Faustini, J. M., & Kaufmann, P. R. (2007). Adequacy of visually classified particle count statistics from regional stream habitat surveys. Journal of the American Water Resources Association, 43, 1293–1315.
Feldman, D., & Jessup, B. (2012). The proper use and interpretation of the Montana observed/expected (O/E) models. Helena: Montana Dept. of Environmental Quality.
Ferreira, W. R., Ligeiro, R., Macedo, D. R., Hughes, R. M., Kaufmann, P. R., Oliveira, L. G., & Callisto, M. (2014). Importance of environmental factors for the richness and distribution of benthic macroinvertebrates in tropical headwater streams. Freshwater Science, 33, 860–871.
Fitzpatrick, F. A., Waite, I. R., D’Arconte, P. J., Meader, M. R., Maupin, M. A., & Gurtz, M. E. (1998). Revised methods for characterizing stream habitat in the National Water-Quality Assessment Program. U.S. Geological Survey Water-Resources Investigations Report 93-4052. Madison, WI.
Flannagan, J. F., & Cobb, D. G. (1991). Factors controlling the species diversity and density of mayflies (Ephemeroptera) emerging from an unstable river in Manitoba, Canada. Overview and Strategies of Ephemeroptera and Plecoptera, 333–341.
Flannagan, J. F., Cobb, D. G., & Friesen, M. K. (1990). The relationship between some physical factors and mayflies emerging from South Duck River and Cowan Creek, Manitoba. In Mayflies and stoneflies: Life histories and biology (pp. 233–242). Netherlands: Springer.
Fripp, J. B., & Diplas, P. (1993). Surface sampling in gravel streams. Journal of Hydraulic Engineering, 119, 473–490.
Goldstein, R. M., Wang, L., Simon, T. P., & Stewart, P. M. (2002). Development of a stream habitat index for the Northern Lakes and Forests Ecoregion. North American Journal of Fisheries Management, 22, 452–464.
Gomi, T., Sidle, R. C., Bryant, M. D., & Woodsmith, R. D. (2001). The characteristics of woody debris and sediment distribution in headwater streams, southeastern Alaska. Canadian Journal of Forest Research, 31, 1386–1399.
Griffith, G. E., Omernik, J. M., & Woods, A. J. (1999). Ecoregions, watersheds, basins, and HUCs: how state and federal agencies frame water quality. Journal of Soil and Water Conservation, 54, 666–677.
Gurnell, A. M., Gregory, K. J., & Petts, G. E. (1995). The role of coarse woody debris in forest aquatic habitats: implications for management. Aquatic Conservation: Marine and Freshwater Ecosystems, 5, 143–166.
Hallisey, J. E., & Belt, G. H. (1996). Relationships between particle movement and channel morphology in some northern Idaho streams. Water Resources Bulletin, 32, 383–391.
Heiskary, S. A., Wilson, C. B., & Larsen, D. P. (1987). Analysis of regional patterns in lake water quality: using ecoregions for lake management in Minnesota. Lake and Reservoir Management, 3, 337–344.
Henley, W. F., Patterson, M. A., Neves, R. J., & Lemly, A. D. (2000). Effects of sedimentation and turbidity on lotic food webs: a concise review for natural resource managers. Reviews in Fisheries Science, 8, 125–139.
Hieber, M., Robinson, C. T., Uehlinger, U., & Ward, J. V. (2002). Are alpine lake outlets less harsh than other alpine streams? Archiv für Hydrobiologie, 154, 199–223.
Hothorn, T., Hornik, K., van de Wiel, M. A., & Zeileis, A. (2006). A Lego system for conditional inference. The American Statistician, 60, 257–263.
Hothorn, T., Hornik, K., van de Wiel, M. A., & Zeileis, A. (2008). Implementing a class of permutation tests: the coin package. Journal of Statistical Software, 28, 1–23.
Jessup, B. K., Kaufmann, P. R., John, F., Guevara, L. S., & Joseph, S. (2014). Bedded sediment conditions and macroinvertebrate responses in New Mexico streams: a first step in establishing sediment criteria. Journal of the American Water Resources Association, 50, 1558–1574.
Kappesser, G. B. (2002). A riffle instability index to evaluate sediment loading to streams. Journal of the American Water Resources Association, 38, 1069–1081.
Kaufmann, P. R., & Hughes, R. M. (2006). Geomorphic and anthropogenic influences on fish and amphibians in Pacific Northwest coastal streams. American Fisheries Society Symposium, 48, 429–455.
Kaufmann, P. R., Levine, P., Robison, E. G., Seeliger, C., & Peck, D. V. (1999). Quantifying physical habitat in wadeable streams. EPA/620/R-99/003. Washington, D.C.: U.S. Environmental Protection Agency.
Kaufmann, P. R., Faustini, J. M., Larsen, D. P., & Shirazi, M. A. (2008). A roughness-corrected index of relative bed stability for regional stream surveys. Geomorphology, 99, 150–170.
Kaufmann, P. R., Larsen, D. P., & Faustini, J. M. (2009). Bed stability and sedimentation associated with human disturbances in Pacific Northwest streams. Journal of the American Water Resources Association, 45, 434–459.
Keller, E. A., & Melhorn, W. N. (1973). Bedforms and fluvial processes in alluvial stream channels: selected observations. In M. Morisawa (Ed.), Fluvial geomorphology (pp. 253–283). Binghamton: State University of New York.
Kershner, J. L., & Roper, B. B. (2010). An evaluation of management objectives used to assess stream habitat conditions on federal lands within the interior Columbia Basin. Fisheries, 35, 269–278.
Kershner, J. L., Roper, B. B., Bouwes, N., Henderson, R., & Archer, E. (2004). An analysis of stream habitat conditions in reference and managed watersheds on some federal lands within the Columbia River Basin. North American Journal of Fisheries Management, 24, 1363–1375.
Klemm, D. J., Blocksom, K. A., Fulk, F. A., Herlihy, A. T., Hughes, R. M., Kaufmann, P. R., Peck, D. V., Stoddard, J. L., Thoeny, W. T., Griffith, M. B., & Davis, W. S. (2003). Development and evaluation of a macroinvertebrate biotic integrity index (MBII) for regionally assessing mid-Atlantic highlands streams. Environmental Management, 31, 656–669.
Kusnierz, P., Welch, A., & Kron, D. (2013). The Montana Department of Environmental Quality sediment assessment method: considerations, physical and biological parameters, and decision making. Helena: Montana Dept. of Environmental Quality.
Lancaster, S. T., Hayes, S. K., & Grant, G. E. (2001). Modeling sediment and wood storage and dynamics in small mountainous watersheds. Geomorphic Processes and Riverine Habitat, 4, 85–102.
Lave, R. (2009). The controversy over natural channel design: substantive explanations and potential avenues for resolution. Journal of the American Water Resources Association, 45, 1519–1532.
Lenat, D. R. (1993). A biotic index for the southeastern United States: derivation and list of tolerance values, with criteria for assigning water-quality ratings. Journal of the North American Benthological Society, 12, 279–290.
Leopold, L. B., Wolman, M. G., & Miller, J. P. (1964). Fluvial processes in geomorphology. San Franscisco: W.H. Freeman & Co.
Ligeiro, R., Hughes, R. M., Kaufmann, P. R., Macedo, D. R., Firmiano, K. R., Ferreira, W. R., Oliveira, D., Melo, A. S., & Callisto, M. (2013). Defining quantitative stream disturbance gradients and the additive role of habitat variation to explain macroinvertebrate taxa richness. Ecological Indicators, 25, 45–57.
Lisle, T. E., & Hilton, S. (1992). The volume of fine sediment in pools: an index of sediment supply in gravel-bed streams. JAWRA Journal of the American Water Resources Association, 28, 371–383.
Macedo, D. R., Hughes, R. M., Ligeiro, R., Ferreira, W. R., Castro, M. A., Junqueira, N. T., Oliveira, D. R., Firmiano, K. R., Kaufmann, P. R., Pompeu, P. S., & Callisto, M. (2014). The relative influence of catchment and site variables on fish and macroinvertebrate richness in cerrado biome streams. Landscape Ecology, 29, 1001–1016.
Maddock, I. (1999). The importance of physical habitat assessment for evaluating river health. Freshwater Biology, 41, 373–391.
May, C. L., & Gresswell, R. E. (2003). Processes and rates of sediment and wood accumulation in headwater streams of the Oregon Coast Range, USA. Earth Surface Processes and Landforms, 28, 409–424.
Mebane, C. A., Maret, T. R., & Hughes, R. M. (2003). An index of biologic integrity (IBI) for Pacific Northwest rivers. Transactions of the American Fisheries Society, 132, 239–261.
Meredith, C., Roper, B., & Archer, E. (2014). Reductions in instream wood in streams near roads in the interior columbia river basin. North American Journal of Fisheries Management, 34, 493–506.
Montana DEQ. (2011). Periphyton standard operating procedure. Helena: Montana Dept. of Environmental Quality.
Montana DEQ. (2012). Sample collection, sorting, taxonomic identification, and analysis of benthic macroinvertebrate communities standard operating procedure. Helena: Montana Dept. of Environmental Quality.
Montgomery, D. R., & Buffington, J. M. (1997). Channel-reach morphology in mountain drainage basins. Geological Society of America Bulletin, 109, 596–611.
Muotka, T., & Virtanen, R. (1995). The stream as a habitat templet for bryophytes: species' distributions along gradients in disturbance and substratum heterogeneity. Freshwater Biology, 33, 141–160.
Newbury, R. W. (1984). Hydrologic determinants of aquatic insect habitats. In V. H. Resh & D. M. Rosenberg (Eds.), The ecology of aquatic insects (pp. 323–357). New York: Praeger.
Newcombe, C. P., & Jensen, J. O. (1996). Channel suspended sediment and fisheries: a synthesis for quantitative assessment of risk and impact. North American Journal of Fisheries Management, 16, 693–727.
Newcombe, C. P., & MacDonald, D. D. (1991). Effects of suspended sediments on aquatic ecosystems. North American Journal of Fisheries Management, 11, 72–82.
Oftedahl, L. A. (2004). Convergence and dissemination: a brief history and description of the StreamNet Project. Science & Technology Libraries, 23, 89–94.
Olsen, D. S., Whitaker, A. C., & Potts, D. F. (1997). Assessing stream channel stability thresholds using flow competence estimates at bankfull stage. Journal of the American Water Resources Association, 33, 1197–1207.
Omernik, J. M. (1987). Ecoregions of the conterminous United States. Annals of the Association of American Geographers, 77, 118–125.
Paulsen, S. G., Mayio, A., Peck, D. V., Stoddard, J. L., Tarquinio, E., Holdsworth, S. M., Van Sickle, J., Yuan, L. L., Hawkins, C. P., Herlihy, A. T., Kaufmann, P. R., Barbour, M. T., Larsen, D. P., & Olsen, A. R. (2008). Condition of stream ecosystems in the US: an overview of the first national assessment. Journal of the North American Benthological Society, 27, 812–821.
Pogue, S. (2008). Measuring the effects of increasing loads of fine sediment from timber harvest and road building on aquatic populations of Dicamptodon tenebrosus (Pacific giant salamander) in California’s Redwoods. Master’s thesis. Arcata, CA: Humbolt State University.
R Core Development Team. (2014). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. http://www.R-project.org. Accessed 26 Jun 2014.
Rankin, E. T. (1995). Habitat indices in water resource quality assessments. In W. S. Davis & T. P. Simon (Eds.), Biological assessment and criteria: tools for water resource planning and decision making (pp. 181–208). Boca Raton: Lewis Publishers.
Relyea, C. D., Minshall, G. W., & Danehy, R. J. (2012). Development and validation of an aquatic fine sediment biotic Index. Environmental Management, 49, 242–252.
Rice, S., & Church, M. (1996). Sampling surficial fluvial gravels: the precision of size distribution percentile estimates. Journal of Sedimentary Research, 66, 654–665.
Roper, B. B., Buffington, J. M., Archer, E., Moyer, C., & Ward, M. (2008). The role of observer variation in determining Rosgen stream types in northeastern Oregon mountain streams. Journal of the American Water Resources Association, 44, 417–427.
Rosgen, D. L. (1994). A classification of natural rivers. Catena, 22, 169–199.
Rosgen, D. L. (1996). Applied river morphology. Fort Collins: Wildland Hydrology.
Schwendel, A. C., Death, R. G., & Fuller, I. C. (2010). The assessment of shear stress and bed stability in stream ecology. Freshwater Biology, 55, 261–281.
Schwendel, A. C., Joy, M. K., Death, R. G., & Fuller, I. C. (2011a). A macroinvertebrate index to assess stream-bed stability. Marine and Freshwater Research, 62, 30–37.
Schwendel, A. C., Death, R. G., Fuller, I. C., & Tonkin, J. D. (2011b). A new approach to assess bed stability relevant for invertebrate communities in upland streams. River Research and Applications, 28, 1726–1739.
Scrivener, J. C., & Brownlee, M. J. (1989). Effects of forest harvesting on spawning gravel and incubation survival of chum (Oncorhynchus keta) and coho salmon (O. kisutch) in Carnation Creek, British Columbia. Canadian Journal of Fisheries and Aquatic Sciences, 46, 681–696.
Simon, A., Doyle, M., Kondolf, M., Shields, F. D., Rhoads, B., & McPhillips, M. (2007). Critical evaluation of how the Rosgen classification and associated “natural channel design” methods fail to integrate and quantify fluvial processes and channel response. Journal of the American Water Resources Association, 43, 1117–1131.
Stoddard, J. L., Peck, D. V., Paulsen, S. G., Van Sickle, J., Hawkins, C. P., Herlihy, A. T., Hughes, R. M., Kaufmann, P. R., Larsen, D. P., Lomnicky, G., Olsen, A. R., Peterson, S. A., Ringold, P. L., & Whittier, T. R. (2005a). An ecological assessment of western streams and rivers. EPA 620/R-05/005. Washington, D.C.: U.S. Environmental Protection Agency.
Stoddard, J. L., Peck, D. V., Olsen, A. R., Larsen, D. P., VanSickle, J., Hawkins, C. P., Hughes, R. M., Whittier, T. R., Lomnicky, G., Herlihy, A. T., Kaufmann, P. R., Peterson, S. A., Ringold, P. L., Paulsen, S. G., & Blair, R. (2005b). Environmental monitoring and assessment program (EMAP) western streams and rivers statistical summary. EPA 620/R-05/006. Washington, D.C.: U.S. Environmental Protection Agency.
Stoddard, J. L., Herlihy, A. T., Hill, B. H., Hughes, R. M., Kaufmann, P. R., Klemm, D. J., Lazorchak, J. M., McCormick, F. H., Peck, D. V., Paulsen, S. G., Olsen, A. R., Larsen, D. P., Van Sickle, J., & Whittier, T. R. (2006). Mid-Atlantic integrated assessment (MAIA) state of the flowing waters report. EPA/620/R-06/001. Washington, D.C.: U.S. Environmental Protection Agency, Office of Research and Development.
Stoddard, J. L., Herlihy, A. T., Peck, D. V., Hughes, R. M., Whittier, T. R., & Tarquinio, E. (2008). A process for creating multimetric indices for large-scale aquatic surveys. Journal of the North American Benthological Society, 27, 878–891.
StreamNet GIS Data. (2012). Metadata for StreamNet generalized fish distribution, all species combined, January 2012. http://www.streamnet.org/online-data/GISData.html. Accessed 24 Sep 2013.
Winget, R. N., & Mangum, F. A. (1979). Biotic condition index: Integrated biological, physical, and chemical stream parameters for management. US Forest Service Intermountain Region.
Wood, P. J., & Armitage, P. D. (1997). Biological effects of fine sediment in the lotic environment. Environmental Management, 21, 203–217.
Wright, J. F. (2000). An introduction to RIVPACS. In J. F. Wright, D. W. Sutcliffe, & M. T. Furse (Eds.), Assessing the biological quality of fresh waters: RIVPACS and other techniques (pp. 1–24). Ambleside: Freshwater Biological Association.
Acknowledgments
We thank those with the PACFISH/INFISH Biological Opinion Effectiveness Monitoring Program for the use of their data. We would also like to acknowledge the personnel from the Montana Department of Environmental Quality who collected the data in the Madison River watershed. Finally, we would like to thank Eric Archer, Christy Meredith, Darrin Kron, Jeff Schaeffer, Phil Kaufmann, and an anonymous reviewer for their comments as they greatly improved the quality of the final manuscript. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. This paper is contribution number 1946 of the USGS Great Lakes Science Center.
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Kusnierz, P.C., Holbrook, C.M. & Feldman, D.L. An evaluation of a bed instability index as an indicator of habitat quality in mountain streams of the northwestern United States. Environ Monit Assess 187, 511 (2015). https://doi.org/10.1007/s10661-015-4714-0
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DOI: https://doi.org/10.1007/s10661-015-4714-0