Abstract
Our study aimed to assess the structure and distribution of plant-parasitic nematodes in soybean [Glycine max (L.) Merr] in the south of Brazil. High taxonomical diversity was found, with records of 10 genera of plant-parasitic nematodes (PPNs), including important pests, such as Meloidogyne (mostly M. javanica with small esterase variability), Pratylenchus (mostly P. brachyurus) and Helicotylenchus spp. The Shannon-Weaver index (H′) ranged from 0 to 1.23 (mean = 0.37), whereas Pielou’s evenness (J) ranged from 0 to 1 (mean = 0.51). The amount of PPNs (0 to 22,050 per 250 cm3 soil, and 0 to 15,500 per 10 g roots), incidence and abundance for Meloidogyne (28.6%; 50 to 19,250 per 250 cm3), Pratylenchus (45.1%; 50 to 550 per 250 cm3), Helicotylenchus (91.2%; 50 to 9,150 per 250 cm3), Tylenchus (34.1%; 50 to 550 per 250 cm3), Xiphinema (33%; 50 to 250 per 250 cm3), Mesocriconema (15.4%; 50 to 2,000 per 250 cm3), Rotylenchus (8.8%; 50 to 1,900 per 250 cm3), Hemicycliophora (1.1%; 50 per 250 cm3), Discocriconemella (1.1%; 950 per 250 cm3) and Tylenchorhynchus (1.1%; 50 per 250 cm3) were related differently to the bioclimatic variables under analysis. Our findings provide an update for the status of PPNs in the south of Brazil and suggest important epidemiological issues linked to the management of these pests in the near future.
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References
Agarwal, D. K., Billore, S. D., Sharma, A. N., Dupare, B. U., & Srivastava, S. K. (2013). Soybean: Introduction, improvement, and utilization in India-problems and prospects. Agricultural Research, 2, 293–300 https://link.springer.com/article/10.1007/s40003-013-0088-0.
Ankrom, K. E., Lopez-Nicora, H., Niblack, T. L., & Lindsey, L. E. (2017). First report of a pin nematode (Paratylenchus neoamblycephalus) from soybean in Ohio. Plant Disease, 101(7), 1330. https://doi.org/10.1094/PDIS-12-16-1728-PDN.
Araújo Filho, J. V., Castro-Moretti, F. R., & Bonfim Jr., M. F. (2014). Pratylenchus brachyurus (Nematoda: Pratylenchidae) in Guariroba in the state of Goiás, Brazil. Helminthologia, 51, 352–354 https://link.springer.com/article/10.2478/s11687-014-0252-5.
Barker, K. R., & Koenning, S. R. (1998). Developing sustainable systems for nematode management. Annual Review of Phytopathology, 36, 165–205.
Barker, K. R., Schimitt, D. P., & Imbriani, J. L. (1985). Nematode population dynamics with enphasis on determining damage potential to crops. In K. R. Barker, C. C. Carter, & J. N. Sasser (Eds.), An advanced treatise on Meloidogyne: Methodology (pp. 135–148). North Carolina State University.
Carneiro, R. M. D. G., Almeida, M. R. A., & Quénéhervé, P. (2000). Enzyme phenotypes of Meloidogyne spp. populations. Nematology, 2(6), 645–654.
Castillo, P., & Vovlas, N., 2007. Pratylenchus (Nematoda: Pratylenchidae): Diagnosis, Biology, Pathogenicity and Management. 6.Ed. Leiden-Boston: Brill
Castro, J. M. C., Lima, R. D., & Carneiro, R. M. G. (2003). Variabilidade enzimática de populações de Meloidogyne spp. provenientes de regiões brasileiras de soja. Nematologia Brasileira, 27, 1–12.
Coolen, W. A., & D'Herde, C. J. (1972). A method for the quantitative extraction of nematodes plant tissue: Ghent, 77p
De Waele, D., & Elsen, A. (2007). Challenges in tropical nematology. Annual Review of Phytopathology, 45, 457–485. https://doi.org/10.1146/annurev.phyto.45.062806.094438.
Dias, W. P., Garcia, A., Silva, J. F. V., & Carneiro, G. E. S. (2010). Nematoides em soja: Identificação e Controle. (Circular Técnica 76). Londrina: Embrapa Soja, 8p
Dickerson, O. J., Blake, J. H., & Lewis, S. A. (2000). Nematode guidelines for South Carolina. Clemson Extension. 32p
Donald, P. A., Holguin, C. M., & Agudelo, P. A. (2013). First report of lance nematode (Hoplolaimus magnistylus) on corn, soybean and cotton in Tennessee. Plant Disease, 97(10), 1389–1389. https://doi.org/10.1094/PDIS-09-12-0881-PDN.
Dormann, C. F., Elith, J., Bacher, S., Buchmann, C., Carl, G., Carré, G., et al. (2013). Collinearity: A review of methods to deal with it and a simulation study evaluating their performance. Ecography, 36, 27–46. https://doi.org/10.1111/j.1600-0587.2012.07348.x.
Elhady, A., Heuer, H., & Hallmann, J. (2018). Plant parasitic nematodes on soybean in expanding production areas of temperate regions. Journal of Plant Diseases and Protection, 125, 567–576. https://doi.org/10.1007/s41348-018-0188-y.
Ferraz, L. C. C. B. (1995). Patogenicidade de Pratylenchus brachyurus a três cultivares de soja. Nematologia Brasileira, 19, 1–8.
Fick, S. E., & Hijmans, R. J. (2017). WorldClim 2: New 1km spatial resolution climate surfaces for global land areas. International Journal of Climatology, 37(12), 4302–4315.
Fleming, T. R., McGowan, N. E., Maule, A. G., & Fleming, C. C. (2016). Prevalence and diversity of plant parasitic nematodes in Northern Ireland glassland and cereals, and the influence of soils and rainfall. Plant Pathology, 65(9), 1539–1550. https://doi.org/10.1111/ppa.12525.
Freckman, D. W., & Caswell, E. P. (1985). The ecology of nematodes in Agroecosystems. Annual Review of Phytopathology, 23, 275–296. https://doi.org/10.1146/annurev.py.23.090185.001423.
Garrett, K. A., Madden, L. V., Hughes, G., & Pfender, W. F. (2004). New applications of statistical tools in plant pathology. Phytopathology, 94, 999–1003.
Gonzaga, V. (2006). Caracterização morfológica, morfométrica e multiplicação in vitro das seis espécies mais comuns de Pratylenchus Filipjev, 1936 que ocorrem no Brasil. Tese. Universidade Estadual Paulista, Faculdade de Ciências Agrárias e Veterinárias, 79
Hamza, M. A., Moukhli, A., Ferji, Z., Fossati-Gaschignard, O., Tavoillot, J., Ali, N., Boubacker, H., El Mousadick, A., & Mateille, T. (2018). Diversity of plant-parasitic nematode communities associated with olive nurseries: Origin and environmental impacts. Applied Soil Ecology, 124, 7–16. https://doi.org/10.1016/j.apsoil.2017.10.019.
Hijmans, R. J., Phillips, S., Leathwick, J., Elith, J. (2017). Dismo: Species distribution modelling. R package version 1.1–4. https://cran.r-project.org/web/packages/dismo/dismo.pdf. Accessed on January 2020
Hijmans, R. J., Van Etten, J., Sumner, M., Cheng, J., Baston D., Bevan, A., et al. (2020). Geographic Data Analysis and Modelling. https://cran.r-project.org/web/packages/raster/ Accessed on January 2020
Husson, F., Josse, J., Le, S., & Mazet, J. (2020). Package ‘FactorMineR’: Multivariate Exploratory Data Analysis and Data Mining. https://cran.r-project.org/web/packages/FactoMineR/FactoMineR.pdf. Accessed on January 2020
Janssen, T., Karssen, G., Orlando, V., Subbotin, S. A., & Bert, W. (2017). Molecular characterization and species delimiting of plant-parasitic nematodes of the genus Pratylenchus from the penetrans group (Nematoda: Pratylenchidae). Molecular Phylogenetics and Evolution, 117, 30–48. https://doi.org/10.1016/j.ympev.2017.07.027.
Jenkins, W. R. A. (1964). Rapid centrifugal-flotation technique for separating nematodes from soil. Plant Disease Reporter, 48, 629.
Kandel, S. L., Smiley, R. W., Garland-Campbell, K., Elling, A. A., Abatzoglou, J., Huggins, D., Rupp, R., & Paulitz, T. C. (2013). Relationship between climatic factors and distribution of Pratylenchus spp. in the dryland wheat-production areas of eastern Washington. Plant Disease, 97, 1448–1456. https://doi.org/10.1094/PDIS-11-12-1060-RE.
Kirsch, V. G., Kulczynski, S. M., Gomes, C. B., Bisognin, A. C., Gabriel, M., Bellé, C., & Lima-Medina, I. (2016). Caracterização de espécies de Meloidogyne e de Helicotylenchus associadas à soja no Rio Grande do Sul. Nematropica, 46, 197–208.
Koc, A. B., Abdullah, M., & Fereidouni, M. (2011). Soybeans processing for biodiesel production. In: Tzi-Bun Ng (Ed.), Soybean: Applications and Technology (pp.19–36). Intech-Open
Kornobis, F. W., Dobosz, R., Bubniewicz, P., & Filipiak, A. (2016). First record of nematode Longidorus attenuatus on soybean in Poland. Plant Disease, 100(1), 228. https://doi.org/10.1094/PDIS-06-15-0625-PDN.
Machado, A. C. Z., & Araújo Filho, J. V. (2016). Broad-sense heritability and variance component estimates for Pratylenchus brachyurus resistance in Brazilian soybean genotypes. Tropical Plant Pathology, 41, 390–396. https://doi.org/10.1007/s40858-016-0113-5.
Machado, A. C. Z., Amaro, P. M., & Silva, S. A. (2019). Two novel potential pathogens for soybean. PLoS One, 14(8), e0221416. https://doi.org/10.1371/journal.pone.0221416.
Mai, W. F., & Mullin, P. G. (1996). Plant-parasitic nematodes: A pictorial key to genera. Cornell University Press.
Meyer, M. C., Favoreto, L., Klepker, D., & Marcelino-Guimarães, F. C. (2017). Soybean green stem and foliar retention syndrome caused by Aphelenchoides besseyi. Tropical Plant Pathology, 42, 403–409. https://doi.org/10.1007/s40858-017-0167-z.
Morkirini, F., Waeyenberge, L., Viaene, N., Andaloussi, F. A., & Moens, M. (2016). Diversity of root-lesion nematodes (Pratylenchus spp.) associated with wheat (Triticum aestivum and T. durum) in Morocco. Nematology, 18(7), 781–801. https://doi.org/10.1163/15685411-00002993.
Naimi, B., & Araújo, M. B. (2016). Sdm: A reproducible and extensible R platform for species distribution modelling. Ecography, 39, 368–375. https://doi.org/10.1111/ecog.01881.
Neher, D. A. (2010). Ecology of plant and free-living nematodes in natural and agricultural soil. Annual Review of Phytopathology, 48, 371–394. https://doi.org/10.1146/annurev-phyto-073009-114439.
Oksanen, J. (2019). Vegan: ecological diversity. https://cran.r-project.org/web/packages/vegan/vignettes/diversity-vegan.pdf/. Accessed on January 2020
R Development Core Team (2018). R: A language and environment for statistical computing. R Foundation for statistical computing, Vienna: The R Foundation for Statistical Computing, version 3.5.1. https://www.R-project.org. Accessed on July 2019
Roman, J., & Hirschmann, H. (1969). Morphology and morphometrics of six species of Pratylenchus. Journal of Nematology, 1(4), 363–386.
Singh, S. K., Hodda, M., Ash, G. J., & Banks, N. C. (2013). Plant-parasitic nematodes as invasive species: Characteristics, uncertainty and biosecurity implications. Annals of Applied Biology, 163, 323–350. https://doi.org/10.1111/aab.12065.
Simon, A. C. M., Lopez-Nicora, H. D., Lindsey, L. E., Niblack, T. L., & Paul, P. A. (2018). Incidence, population density, and spatial heterogeneity of plant-parasitic nematodes in corn fields in Ohio. Plant Disease, 102(12), 2453–2464. https://doi.org/10.1094/PDIS-02-18-0311-RE.
Siqueira, K. M. S. (2007). Importância de Pratylenchus brachyurus na cultura do caupi e estudos morfológicos e morfométricos sobre populações do Brasil. Tese, Universidade de São Paulo, Escola Superior de Agricultura Luiz de Queiróz. Piracicaba, São Paulo, Brasil 106 p
Suzuki, R., Terada, Y., & Shimodaira, H. 2019. Package “pvclust”: Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling. https://cran.r-project.org/web/packages/pvclust/pvclust.pdf. Accessed on February 2020
Wrather, A., Shannon, G., Balardin, R., Silva, L. H. C. P., Escobar, R., Gupta, G. K., Ma, Z., Morel, W., Ploper, D., & Tenuta, A. (2010). Effect of diseases on soybean yield in the top eight producing countries in 2006. Plant Health Progress, 10, 1094.
Yan, G., Plaisance, A., Huang, D. A., & Handoo, Z. (2017). First report of the spiral nematode Helicotylenchus microlobus infecting soybean in North Dakota. Journal of Nematology, 49(1), 1–1.
Acknowledgments
This study was financed in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) - Finance Code 001. This work was carried out with the support of the National Council for Scientific and Technological Development (CNPq: 409629/2016-2). LJ Dallagnol is supported by fellowship CNPq (grant number 308149/2018-1). We are very gratefully to Prof. Dr. Edemar Antonio Rossetto (Federal University of Pelotas) and Dr. Francisco Ribeiro de Araújo Neto (IFGoiano-Rio Verde) for their valuable help.
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Márquez, L.A.Y., Gomes, C.B., Bellé, C. et al. Unveiling the structure and distribution of plant-parasitic nematode communities in soybean fields in southern of the Brazil. Eur J Plant Pathol 160, 457–468 (2021). https://doi.org/10.1007/s10658-021-02256-1
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DOI: https://doi.org/10.1007/s10658-021-02256-1