Abstract
Continuous cell lines could provide an important tool for studying epidemiology, toxicology, cellular physiology and the host–pathogen interactions. Random amplified polymorphic deoxyribonucleic acid analysis by PCR (RAPD-PCR) was used for the molecular characterization of Dicentrarchus labrax embryonic cells (DLEC) as a possible tool to detect DNA alterations in environmental genotoxic studies. We studied the DNA pattern of the DLEC fish cell line, a fibroblast-like cell line derived from European sea bass. From a total of 15 primers only six showed good discriminatory power for the amplification process on DNA samples collected from cells by three different methods (organic extraction, salting-out method and chelating agent extraction). The results obtained show that the cell line chosen for this study could be used as a possible tool for the detection of potential genotoxicity of numerous chemical compounds.
Similar content being viewed by others
References
Arfellini G, Grilli S, Colacci A, Mazzullo M, Prodi G (1985) In vivo and in vitro binding of benzene to nucleic acids and proteins of various rat and mouse organs. Cancer Lett 28:159–168
Atienzar FA, Jha AN (2006) The random amplified polymorphic DNA (RAPD) techniques applied to genotoxicity and carcinogenesis studies: a critical review. Mutat Res 613:76–102
Atienzar FA, Cordi B, Evenden AJ (1999) Qualitative assessment of genotoxicity using random amplified polymorphic DNA: comparison of genomic template stability with key fitness parameters in Daphnia magna exposed to benzo[a]pyrene. Environ Toxicol Chem 18:2275–2282
Atienzar FA, Venier P, Jha AN (2002) Evaluation of the random amplified polymorphic DNA (RAPD) assay for the detection of DNA damage and mutations. Mutat Res 521:151–163
Bardakci E, Skibinski DOE (1994) Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity 73:117–123
Bols NC, Lee LEJ (1991) Technology and use of cell cultures from the tissues and organs of bony fish. Cytotechnology 6:163–187
Buonocore F, Libertini A, Prugnoli D, Mazzini M, Scapigliati G (2005) Production and characterization of a continuous embryonic cell line from sea bass (Dicentrarchus labrax L.). Mar Biotechnol 8:80–85
Cadet JD, Douki T, Gasparutto T, Pouget D, Ravanat JP, Sauvaigo JL (1999) Hydroxyl radicals and DNA base damage. Mutat Res 424:9–21
Cheng S, Chen Y, Monforte JA, Higuchi R, Houten BV (1995) Template integrity is essential from genomic DNA. PCR Methods Appl 4:294–298
Cocconcelli PS, Porro D, Galandini S, Senini L (1995) Development of RAPD protocol for typing of strains of lactic acid bacteria and enterococci. Lett Appl Microbiol 21:376–379
Collins A (1999) Oxidative DNA damage, antioxidants, and cancer. Bioessays 21:238–246
De Flora S, Vigano L, D’Agostini F, Camoriano A, Bagnasco M, Bennicelli C, Melodia F, Arillo A (1993) Multiple genotoxicity biomarkers in fish exposed in situ to polluted river water. Mutat Res 3198:167–177
Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1:19–21
Fan TJ, Ren BX, Geng XF, Yu QT, Wang LY (2010) Establishment of a turbot fin cell line and its susceptibility to turbot reddish body iridovirus. Cytotechnology 62:217–233
Ferrero M, Castano A, Gonzalez A, Sanz F, Becerril C (1998) Characterization of RTG-2 fish cell line by randomly amplified polymorphic DNA. Ecotoxicol Environ Saf 40:56–64
Fryer JL, Lannan GN (1994) Three decades of fish cell culture: a current listing of cell lines. J Tissue Cult Methods 16:87–94
Girling AE, Pascoe D, Janssen CR, Peither A, Wenzel A, Schäfer H, Neumeier B, Mitchell GC, Taylor EJ, Maund SJ, Lay JP, Jüttner I, Crossland NO, Stephenson RR, Persoone G (2000) Development of methods for evaluating toxicity to freshwater ecosystems. Ecotoxicol Environ Saf 45:148–176
Hagger JA, Atienzar FA, Jha AN (2005) Genotoxic, cytotoxic, developmental and survival effects of tritiated water in the early life stages of the marine mollusc, Mytilus edulis. Aquat Toxicol 74:205–217
Huang XH, Huang YH, Sun JJ, Han X, Qin QW (2009) Characterization of two grouper Epinephelus akaara cell lines: application to studies of Singapore grouper iridovirus (SGIV) propagation and virus-host interaction. Aquaculture 292:172–179
Kawai Y, Mitsuhashi J (1997) An insect cell line discrimination method by RAPD PCR. In Vitro Cell Dev Biol 33A:512–515
Keshava C, Keshava N, Zhou G, Whong WZ, Ong TM (1999) Genetic instability in silica- and cadmium chloride-transformed BALB/c-3T3 and tumor cell lines by randomly amplified polyinorphic DNA analysis. Mutat Res 425:117–123
Koh TL, Khoo G, Fan LQ, Phang VPE (1999) Genetic diversity among wild forms and cultivated varieties of discus (Symphysodon spp.) as revealed by randomly amplified polymorphic DNA (RAPD) fingerprinting. Aquaculture 173:485–497
Liu ZJ, Li R, Argue BJ, Dunham RA (1999) Randomly amplified polymorphic DNA markers: usefulness for gene mapping and analysis of genetic variation of catfish. Aquaculture 174:59–68
Liu W, Li P, Qi X, Zhou Q, Sun T, Yang Y (2005) DNA changes in barley (Hordeum vulgare) seedlings induced by cadmium pollution using RAPD analysis. Chemosphere 61:158–167
Liu W, Yang YS, Zhou Q, Xie L, Li P et al (2007) Impact assessment of cadmium contamination on rice (Oryza sativa L.) seedlings at molecular and population levels using multiple biomarkers. Chemosphere 67:1155–1163
Miller S, Dykes DD, Polesky HJ (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16:1215
Parameswaran V, Ishaq Ahmed VP, Shukla R, Bhonde RR, Sahul Hameed AS (2007) Development and characterization of two new cell lines from milkfish (Chanoschanos) and grouper (Epinephelus coioides) for virus isolation. Mar Biotechnol 9:281–291
Perry GML, McDonald GJ, Ferguson MM, Ganassin RC, Bols NC (2001) Characterization of rainbow trout cell lines using microsatellite DNA profiling. Cytotechnology 37:143–151
Reddy MV, Schultz SC, Blackburn G, Makerer CR (1994) Lack of DNA-adduct formation in mice treated with benzene. Mutat Res 325:149–155
Rocco L, Frenzilli G, Fusco D, Peluso C, Stingo V (2010) Evaluation of zebrafish DNA integrity after exposure to pharmacological agents present in aquatic environments. Ecotoxicol Environ Saf 73:1530–1536
Rocco L, Izzo A, Zito G, Peluso C, Stingo V (2011) Genotoxicity in zebrafish (Danio rerio) exposed to two pharmacological products from an impacted Italian river. J Environ Anal Toxicol 1:103. doi:10.4172/2161-0525.1000103
Rocco L, Frenzilli G, Zito G, Archimandritis A, Peluso C, Stingo V (2012) Genotoxic effects in fish induced by pharmacological agents present in the sewage of some Italian water-treatment plants. Environ Toxicol 27:18–25
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
Sauvant MP, Pepin D, Bohatier J, Groliere CA, Guillot J (1997) Toxicity assessment of 16 inorganic environmental pollutants by six bioassays. Ecotoxicol Environ Saf 37:131–140
Savva D (1998) Use of DNA fingerprinting to detect genotoxic effects. Ecotoxicol Environ Saf 41:103–106
Sharma VL, Param K, Tajinder KG, Mamtesh K, Ranbir CS (2010) Genetic characterisation in two species of Catopsilia (Pieridae:Lepidoptera) by RAPD-PCR technique. Caryologia 63:250–256
Shugart L, Theodorakis C (1994) Environmental genotoxicity: probing the underlying mechanisms. Environ Health Perspect 102:13–17
Sobhana KS, George KC, Venkat Ravi G, Ittoop G, Paulraj R (2009) Development of a cell culture system from gill explants of the grouper, Epinephelus malabaricus (Bloch and Shneider). Asian Fish Sci 22:1–6
Stacey G, Bolton B, Doyle A, Griffiths B (1992) DNA fingerprinting—a valuable new technique for the characterization of cell lines. Cytotechnology 9:211–216
Stahl RG Jr (1991) The genetic toxicology of organic compounds in natural waters and wastewaters. Ecotoxicol Environ Saf 22:94–125
Sun-Yee K, Ryung-Hyo K, Tae-Lin H, Jeen-Woo P (2000) a-Phenyl-Nt-butylnitrone protects oxidative damage to HepG2 cells. J Biochem Mol Biol 34:43–46
Unyayar S, Celik A, Cekic FO, Gozel A (2006) Cadmium-induced genotoxicity, cytotoxicity and lipid peroxidation in Allium sativum and Vicia faba. Mutagenesis 21:77–81
Walsh PS, Metzger M, Higuchi R (1991) Chelex 100 as a medium for forensic material. Biotechniques 10:506–513
Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213–7218
Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tiugey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535
Winston GW, Di Giulio RT (1991) Prooxidant and antioxidant mechanisms in aquatic organisms. Aquat Toxicol 19:137–161
Wolf K, Quimby MC (1962) Established eurythennic line of fish cells in vitro. Science 135:1065–1066
Zhiyi R, Haowen Y (2004) A method for genotoxicity detection using random amplified polymorphism DNA with Danio rerio. Ecotoxicol Environ Saf 58:96–103
Zhou YP, Ge S, Wang XD (1997) The biomarker in systematic and evolutionary botany. Science Publisher, Beijing, pp 30–51
Zhou GZ, Li ZQ, Yuan XP, Zhang QY (2007) Establishment, characterization, and virus susceptibility of a new marine cell line from red spotted grouper (Epinephelus akaara). Mar Biotechnol 9:370–376
Acknowledgments
The authors would like to express their gratitude to Dr. Antony Bridgewood for his assistance in revising the English of this manuscript.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Rocco, L., Valentino, I.V., Scapigliati, G. et al. RAPD-PCR analysis for molecular characterization and genotoxic studies of a new marine fish cell line derived from Dicentrarchus labrax . Cytotechnology 66, 383–393 (2014). https://doi.org/10.1007/s10616-013-9586-y
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10616-013-9586-y