Datasets
The study comprised 3 datasets.
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Dataset 1: 70 healthy subjects (45 women, 37.9 ± 17.6 years old) underwent resting-state EEG recording with a 128 channel Biosemi ActiveTwo EEG-system (Biosemi B.V., Amsterdam, Netherlands).
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Dataset 2: 20 healthy subjects (13 women; 28.7 ± 5.6 years old) underwent resting-state EEG recording with a 128 channel Biosemi ActiveTwo EEG-system and behavioral assessment of motor performance with a finger-tapping task. All had a normal or corrected-to-normal vision and no history of neurological or psychiatric disorders and were paid for their participation.
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Dataset 3: 20 healthy subjects (17 women, 25.5 ± 5.4 years old) underwent resting-state EEG recording with a 20 channel Enobio system with dry-gel electrodes (neuroelectrics, Barcelona) and behavioral assessment of motor performance with a finger-tapping task. All had a normal or corrected-to-normal vision and no history of neurological or psychiatric disorders and were paid for their participation.
All procedures were approved by the ethical committee of the canton of Geneva and performed according to the declaration of Helsinki. All participants gave written informed consent after receiving an explanation on the nature of the experiments.
Behavioral Assessments
Participants of dataset 2 and 3 performed a sequential finger-tapping task (FTT) (Zhang et al. 2012) immediately after the resting-state EEG recording. The task was designed using E-Prime 2.0 software (Psychology Software Tools, Pittsburgh, PA). Participants were instructed to repeat a given five-item sequence with their left hand (little finger to index) on four horizontally arranged buttons numbered left to right on a Chronos box (Psychology Software Tools, Pittsburgh, PA; https://pstnet.com/products/chronos/). The same sequence was used throughout the whole experiment (1-4-2-3-1). It was continuously presented to participants while they had to perform it. They had to repeat the sequence as fast and accurately as possible during two blocks of 30 s. No feedback was given. Motor performance was quantified as the average number of correct motor sequences per minute.
Recordings
EEG was recorded with a 128-channel Biosemi ActiveTwo EEG-system using active gel electrodes (Biosemi B.V., Amsterdam, Netherlands) at a sampling rate of 512 Hz in datasets 1 and 2, or with a 20-channel Enobio system using dry-gel electrodes (neuroelectrics, Barcelona) at 500 Hz in dataset 4 in an awake, resting condition during which subjects kept their eyes closed. Artifacts and data segments with signs of drowsiness were excluded by visual inspection of the data. Electrodes containing artifacts persistent across multiple epochs were excluded. These electrodes were interpolated from neighboring electrodes using a 3D spline interpolation (< 5% interpolated electrodes) (Perrin et al. 1987) for analyses of sensor FC and for source reconstructions with standardized low-resolution electromagnetic tomography (sLORETA), but not for source reconstruction with beamformers.
The 19 electrodes followed the positions of the international 10–20 system. In datasets 1 and 2, they were selected from the full 128 montage. For comparison, sensor FC was also computed from sensor data with an average reference and a small Laplacian reference of each electrode.
The EEG was segmented into 300 non-overlapping, artifact-free epochs of 1 s duration and bandpass-filtered between 1 and 20 Hz.
Figure 1 gives a schematic overview of the different analysis steps that were taken in order to reconstruct FC in real data from low-density recordings, as compared to the high-density montages as gold standard.
Source Localization
For individual MRI-based head models, the MRI protocol contained a high-resolution T1-weighted, 3-D spoiled gradient-recalled echo in a steady state sequence covering the whole skull (192 coronal slices, 1.1 mm thickness, TR = 2500 ms, TE = 3 ms, flip angle = 8°).
Each subject’s brain was segmented into scalp, skull, grey and white matter with NUTMEG (http://nutmeg.berkeley.edu) (Dalal et al. 2011) and the toolbox MARS (https://www.parralab.org/mars/) (Huang and Parra 2015).
We computed the lead-potential with 10 mm grid spacing (~ 1200 solution points) using a boundary element head model (BEM). The BEM was created with the Helsinki BEM library (http://peili.hut.fi/BEM/) (Stenroos et al. 2007) and the NUTEEG plugin of NUTMEG, based on the individual T1 MRI of each subject as well as based on the Montreal Neurological Institute template brain.
Source FC was calculated in Matlab (The MathWorks Inc., Natick, USA) with NUTMEG (http://nutmeg.berkeley.edu) (Dalal et al. 2011) and its functional connectivity mapping (FCM) toolbox (Guggisberg et al. 2011).
Most previous studies reporting correlations between alpha-band FC and behavior, and previous trials using neurofeedback to train alpha-band FC were based on source reconstructions of hd-EEG arrays with beamformers (Dubovik et al. 2012; Guggisberg et al. 2015; Mottaz et al. 2015, 2018). Thus, we used the same approach here as a reference for comparison with other approaches. A scalar minimum variance beamformer (MVBF) was used to project preprocessed hd-EEG data to source space (Sekihara et al. 2004).
The MVBF uses the temporal covariance of the EEG data (in addition to the sensor geometry) to create a custom spatial filter depending on the signal characteristics. This enables more precise and focal source localization (Sekihara et al. 2005). However, beamformers are sensitive to the accuracy of the head model; measured data that is inconsistent with the head model is liable to be rejected as noise (Steinsträter et al. 2010). We thus compared beamformers to standardized low-resolution electromagnetic tomography (sLORETA) (Pascual-Marqui 2002) as a widely used inverse solution that does not have these limitations of beamformers. On the downside, it enables less focal reconstructions (Sekihara et al. 2005) and thus is likely to induce more spatial leakage of the reconstructed sources.
Dipole Orientation
For the localization of FC in the brain, we require an estimation of neural network oscillations at each solution point. Vector weights obtained from the inverse solution allow only reconstructing squared power values; the reconstruction of neural oscillations requires a scalar weight matrix. In order to scalarize the lead-potential as input to scalar weights computation, we need to determine the dipole orientation at each grid location. We computed the optimal dipole orientation at each solution point as the orientation yielding maximum output signal-to-noise ratio (SNR). For the MVBF, the optimum orientation at each solution point v is given by (Sekihara et al. 2004):
$${{\varvec{\eta}}}_{v}={{\varvec{v}}}_{min}\left\{{\left[{{\varvec{L}}}_{v}^{T}{{\varvec{R}}}^{-1}{{\varvec{L}}}_{v}\right]}^{-1}\left[{{\varvec{L}}}_{v}^{T}{{\varvec{R}}}^{-2}{{\varvec{L}}}_{v}\right]\right\}$$
(1)
where vmin is the eigenvector corresponding to the minimum eigenvalue of the matrix in {}, L is the vector lead-potential, R the sensor covariance matrix, and superscript T denotes the matrix transpose.
For sLORETA, it is obtained as (Pascual-Marqui et al. 2009):
$${{\varvec{\eta}}}_{v}={{\varvec{v}}}_{max}\left\{{{\varvec{L}}}_{v}^{T}{{\varvec{G}}}^{-1}{{\varvec{R}}{\varvec{G}}}^{-1}{{\varvec{L}}}_{v} , {{\varvec{L}}}_{v}^{T}{{\varvec{G}}}^{-1}{{\varvec{L}}}_{v}\right\}$$
(2)
where vmax is the eigenvector corresponding to the maximum generalized eigenvalue, and G the gram matrix defined as LLT.
The scalar lead-potential was then calculated as:
$${{\varvec{l}}}_{v,\eta }={{\varvec{l}}}_{v}{{\varvec{\eta}}}_{v}$$
(3)
Independent Component Analysis (ICA)
EEG electrodes carry information from multiple brain sources that are mixed together. One approach to unmix these signals is independent component analysis (Hyvarinen 1999; Reineberg et al. 2015). Average referenced sensor time series with 19 channels of all subjects were normalized to common amplitude and variance using z-scores, concatenated in the time dimension, and subjected to a FastICA algorithm (Hyvarinen 1999) with the FastICA package for MATLAB (https://research.ics.aalto.fi/ica/fastica/). Default parameters were used. This led to 19 independent components. The unmixing matrix obtained from all subjects was then applied to the sensor data of each subject.
Functional Connectivity (FC)
We used the absolute imaginary component of coherence (IC) as an index of FC (Nolte et al. 2004; Sekihara et al. 2011). One FC value was obtained from all 300 epochs of data. For sensor FC, it was computed directly between the preprocessed and filtered EEG sensor data. For ICA data, IC was computed between independent components. For source FC, we used the source time series estimated with inverse solutions. From this, we calculated the weighted node degree (WND) for each voxel, component, or electrode as the mean of its coherence with all other voxels/components/electrodes (Newman 2004). The WND can been as index of the overall importance of a brain area in the network.
FC values can be influenced by the signal-to-noise ratio of the EEG. To minimize this potential confound, we normalized WND values at each voxel by subtracting the mean WND across all voxels and then dividing by the standard deviation of all voxels, thus obtaining z-scores (Dubovik et al. 2012; Mottaz et al. 2015).
In case of individual head models, normalized WND values were spatially normalized to canonical Montreal Neurological Institute space with functions from the Matlab toolbox SPM8 (https://www.fil.ion.ucl.ac.uk/spm/software/spm8/).
Regions, Independent Components, and Electrodes of Interest
For correlations between source FC and visuo-motor behavior, we defined the right (i.e. contralateral to the moved hand) Precentral gyrus as region of interest (ROI) using the automated anatomical labeling (AAL) atlas (Tzourio-Mazoyer et al. 2002). ROI values were obtained as the average WND across its containing voxels. For sensor FC, electrode C4 was analyzed. For ICA processed data, we defined an independent component of interest. For this, we correlated source time series obtained with the full EEG array, individual head models, and MVBF with the time series of each independent component. The independent component whose time series correlated positively with source time series at the right sensorimotor cortex was used for further analysis.
Statistical Analyses
To investigate the fidelity of source reconstructions with template head models and with low-density EEG arrays, we correlated normalized WND values obtained with individual MRI-based head models and 128 channel data (gold standard) to normalized WND values obtained with template head models using 128 or 19 electrodes. Pearson correlation coefficients were computed over all 82 cortical ROIs of the AAL atlas for each of the 70 subjects of dataset 1, i.e., the normalized WND values of the gold standard at all ROIs were correlated with the values of the test setup at all ROIs. Fisher-Z transformed correlation coefficients of all subjects were then fed to a one-way ANOVA with the analysis setup as a dependent factor. Pairwise post-hoc comparisons were done with the Tukey–Kramer HSD correction.
For comparison between sensor and source FC, we matched each of the 19 electrodes of the international 10–20 system to the ROI that had the shortest Euclidean distance from the electrode’s position. Source normalized WND obtained from 19 electrodes at these ROIs as well as sensor normalized WND obtained from 19 average-referenced or Laplacian-referenced electrodes was then correlated to the normalized WND values obtained with individual MRI-based head models and 128 channel data.
We also correlated source FC at the right precentral gyrus obtained with template head models and 19 electrodes to the source FC obtained with the gold standard, since this was our ROI for motor behavior. This time, the correlation was done over subjects.
Next, we investigated the ability of low-density EEG arrays to capture associations with behavioral performance. Pearson correlation coefficients were computed for associations between alpha-band FC and FTT performance in subjects of datasets 2 and 3. This was done for the precentral ROI, C4 electrode, and the independent component of interest. The correlation obtained with the gold standard (individual MRI-based head models, 128 channel data, MVBF) was juxtaposed to the correlation coefficients obtained with 19 channels using either source localization, sensor FC, or FC between independent components.
To check the feasibility of obtaining FC using even more convenient dry-gel electrodes, we then used data from patients in dataset 3 to correlate source FC with FTT performance.
Numerical Simulations
For 38 randomly selected subjects of dataset 1, we simulated 3 cortical point sources with a 10 Hz sinusoidal rhythm. The main source of interest was placed to the center of the right primary motor cortex. Two additional sources with 10 Hz oscillation were defined at the left primary motor cortex and the right premotor area. They had a radial phase lag of π/2 (= 25 ms) or − π/2, respectively, relative to the first point source. This phase difference leads to maximal values in the imaginary part of coherence, while the lag of π between sources 2 and 3 produce 0 imaginary coherence. The dipole orientations were fixed to point in a random orientation at each location. In addition, to test whether our settings are able to capture variance in coupling strength across subjects, we additionally simulated variance in coupling strength between point source 1 and point sources 2/3. This was achieved by simulating alpha activity in only 60% of the 300 epochs. The number of epochs with alpha activity at both source 1 and sources 2/3 at the same time (i.e., with coherent alpha activity) was then varied across subjects between a minimum of 57% and maximum of 100% of alpha epochs. Thus, the remaining epochs contained alpha activity either only at source 1 or only at sources 2/3. The cortical sources were then projected to the EEG sensors by using a scalar lead-potential calculated with a BEM head model based on individual MRIs. Four different levels of Gaussian random noise were added to the sensors (SNRs of 1, 2, 3, or 5). A total of 300 epochs of 1 s were created in this way to obtain the same data size as in real data. The simulated sensor data was then processed as the real data: it was bandpass filtered between 1 and 20 Hz, and projected back to all gray matter grid locations through a spatial filter matrix calculated with the MVBF and sLORETA inverse solutions described above. The WND of IC was computed at all cortical grid locations for the alpha frequency band as in the real data.
The Euclidean distance between the WND peak and the coordinate of source 1 was then calculated to determine the localization error. Errors were subjected to a three-way ANOVA with the setup (head model and number of channels), inverse solution, and SNR as dependent factors.
The coupling strength that was simulated was correlated with the magnitude of WND. Correlation coefficients were tested for difference between setups using Meng’s test for correlated correlations (Meng et al. 1992).