Abstract
In wheat seeds, starch synthase I or the Waxy protein is an enzyme involved in amylose synthesis. The gene encoding this enzyme is Wx and in this study, eight novel Wx alleles were identified in three diploid Taeniatherum species. The variability of these alleles was evaluated, and their nucleotide sequences were compared with those of homologous alleles from wheat. Two types of Taeniatherum Wx alleles were detected in three diploid species Ta. caput-medusae, Ta. asperum, and Ta. crinitum. A phylogenetic analysis indicates that the Taeniatherum Wx alleles were more closely related to Wx alleles from Aegilops species with C, D, M, and U genomes than to Wx alleles of other species. These alleles represent a potential genetic resource that may be useful in wheat breeding programs.
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Abbreviations
- pI:
-
isoelectric point
- MYA:
-
million years ago
- Wx :
-
waxy
References
Ainsworth, C., Clark, J., Balsdon, J.: Expression, organisation and structure of the genes encoding the waxy protein (granule-bound starch synthase) in wheat. — Plant. mol. Biol. 22: 67–82, 1993.
Caballero, L., Bancel, E., Debiton, C., Branlard, G.: Granule bound starch synthase (GBSS) diversity of ancient wheat and related species. — Plant. Breed. 127: 548–553, 2008.
Chao, S., Sharp, P.J., Worland, A.J., Warham, E.J., Koebner, R.M.D., Gale, M.D.: RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. — Theor. appl. Genet. 78: 495–504, 1989.
Dai, S.F., Pu, Z.J., Liu, D.C., Wei, Y.M., Zheng, Y.L., Hu, X.K., Yan, Z.H.: Characterization of novel HMW-GS in two diploid species of Eremopyrum. — Gene 519: 55–59, 2013.
Doyle, J.J., Doyle, J.L.: Isolation of plant DNA from fresh tissue. — Focus 12: 13–15, 1990.
Dvořák, J., Akhunov, E.D.: Tempos of gene locus deletions and duplications and their relationship to recombination rate during diploid and polyploid evolution in the Aegilops-Triticum alliance. — Genetics 171: 323–332, 2005.
Dvořák, J., Luo, M.C., Yang, Z.L., Zhang, H.B.: The structure of the Aegilops tauschii gene pool and the evolution of hexaploid wheat. — Theor. appl. Genet. 97: 657–670, 1998.
Dvořák, J., Zhang, H.B.: Reconstruction of the phylogeny of the genus Triticum from variation in repeated nucleotide sequences. — Theor. appl. Genet. 84: 419–429, 1992.
Frederiksen, S.: Revision of Taeniatherum (Poaceae). — Nordic J. Bot. 6: 389–397, 1986.
Frederiksen, S., Von Bothmer, R.: Intergeneric hybridization between Taeniatherum and different genera of Triticeae, Poaceae. — Nordic J. Bot. 9: 229–240, 1989.
Frederiksen, S., Von Bothmer, R.: Relationships in Taeniatherum (Poaceae). — Can. J. Bot. 64: 2343–2347, 1986.
Guzmán, C., Alvarez, J.B.: Molecular characterization of a novel waxy allele (Wx-Au1a) from Triticum urartu Thum. ex Gandil. — Genet. Resour. Crop Evol. 59: 971–979, 2012.
Guzmán, C., Caballero, L., Alvarez, J.B.: Variation in Spanish cultivated einkorn wheat (Triticum monococcum L. ssp. monococcum) as determined by morphological traits and waxy proteins. — Genet. Resour. Crop Evol. 56: 601–604, 2009.
Guzmán, C., Caballero, L., Martín, L.M., Alvarez, J.B.: Waxy genes from spelt wheat: new alleles for modern wheat breeding and new phylogenetic inferences about the origin of this species. — Ann. Bot. 110: 1161–1171, 2012a.
Guzmán, C., Caballero, L., Yamamori, M., Alvarez, J.B.: Molecular characterization of a new waxy allele with partial expression in spelt wheat. — Planta 235: 1331–1339, 2012b.
Guzmán, C., Ortega, R., Yamamori, M., Pena, R.J., Alvarez, J.B.: Molecular characterization of two null Waxy alleles in Mexican Bread wheat landraces. — J. Cereal Sci. 62: 8–14, 2015.
Ingram, A.L., Doyle, J.J.: The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear waxy and plastid rps16. — Amer. J. Bot. 90: 116–122, 2003.
Kihara, H.: Discovery of the DD analyser, one of the ancestors of Triticum vulgare. — Agr. Hort. 19: 13–14, 1944.
Kilian, B., Mammen, K., Millet, E., Sharma, R., Graner, A., Salamini, F., Hammer, K., Özkan, H.: Aegilops. - In: Kole, C. (ed.): Wild Crop Relatives: Genomic and Breeding Resources: Cereals. Pp. 1–76, Springer, Berlin - Heidelberg 2011.
Li, W., Gao, Z., Xiao, W., Wei, Y.M., Liu, Y.X., Chen, G.Y., Pu, Z.E., Chen, H.P., Zheng, Y.L.: Molecular diversity of restriction enzyme sites, Indels and upstream open reading frames (uORFs) of 5′ untransalted regions (UTRs) of Waxy genes in Triticum L. and Aegilops L. species. — Genet. Resour. Crop Evol. 59: 1625–1647, 2012.
Librado, P., Rozas, J.: DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. — Bioinformatics 25: 1451–1452, 2009.
Liu, Y.X., Li, W., Wei, Y.M., Chen, G.Y., Zheng, Y.L.: Molecular characterization of the Waxy gene in einkorn wheat. — J. Plant Sci. 4: 114–121, 2009.
Maestra, B, Naranjo, T.: Homoeologous relationships of Aegilops speltoides chromosomes to bread wheat. — Theor. appl. Genet. 97: 181–186, 1998.
Mason-Gamer, R.J.: Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on granule bound starch synthase gene sequences. — Syst. Bot. 26: 757–768, 2001.
Mason-Gamer, R.J., Weil, C.F., Kellogg, E.A.: Granule-bound starch synthase: structure, function, and phylogenetic utility. — Mol. biol. Evol. 15: 1658–1673, 1998.
Morell, M.K., Rahman, S., Alrahams, S.L., Appeles, R.: The biochemistry and molecular biology of starch synthesis in cereals. — Aust. J. Plant Physiol. 22: 647–660, 1995.
Murai, J., Taira, T., Ohta, D.: Isolation and characterization of the three Waxy genes encoding the granule-bound starch synthase in hexaploid wheat. — Gene 234: 71–79, 1999.
Nakamura, T., Yamamori, M., Hirano, H., Hidaka, S.: Identification of three Wx proteins in wheat (Triticum aestivum L.). — Biochem. Genet. 31: 75–86, 1993.
Nakamura, T., Yamamori, M., Hirano, H., Hidaka, S.: Production of waxy (amylose-free) wheats. — Mol. gen. Genet. 248: 253–259, 1995.
Ortega, R., Alvarez, J.B., Guzmán, C.: Characterization of the Wx gene in diploid Aegilops species and its potential use in wheat breeding. — Genet. Resour. Crop Evol. 61: 369–382, 2014a.
Ortega, R., Guzmán, C., Alvarez, J.B.: Wx gene in diploid wheat: molecular characterization of five novel alleles from enikorn (Triticum monococcum L. ssp. monococcum) and T. urartu. — Mol. Breed. 34: 1137–1146, 2014b.
Rodriguez-Quijano, M., Nieto-Taladriz, M.T., Carrillo, J.M.: Polymorphism of waxy proteins in Iberian hexaploid wheats. — Plant. Breed. 117: 341–344, 1998.
Sim, N.L., Kumar, P., Hu, J., Henikoff, S., Schneider, G., Ng, P.C.: SIFT web server: predicting effects of amino acid substitutions on proteins. — Nucl. Acids Res. 40: W452–W457, 2012.
Tajima, F.: Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. — Genetics 123: 585–595, 1989.
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., Kumar, S.: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. — Mol. Biol. Evol. 28: 2731–2739, 2011.
Urbano, M., Margiotta, B., Colaprico, G., Lafiandra, D.: Waxy proteins in diploid, tetraploid and hexaploid wheats. — Plant. Breed. 121: 465–469, 2002.
Wang, S., Li, X., Wang, K., Wang, X., Li, S., Zhang, Y., Guo, G., Zeller, F.J., Hsam, S.L.K., Yan, Y., Gustafson, P.: Phylogenetic analysis of C, M, N, and U genomes and their relationships with Triticum and other related genomes as revealed by LMW-GS genes at Glu-3 loci. — Genome 54: 273–284, 2011.
Yamamori, M.: Amylose content and starch properties generated by five variant Wx alleles for granule-bound starch synthase in common wheat (Triticum aestivum L.). — Euphytica 165: 607–614, 2009.
Yamamori, M., Nakamura, T., Endo, T.R., Nagamine, T.: Waxy protein deficiency and chromosomal location of coding genes in common wheat. — Theor. appl. Genet. 89: 179–184, 1994.
Yamamori, M., Nakamura, T., Nagamine, T.: Ploymorphism of two waxy proteins in the emmer group of tetraploid wheat, Triticum dococcoides, T. dicoccum and T. durum. — Plant. Breed. 114: 215–218, 1995.
Yamamori, M., Yamamoto, K.: Effects of two novel Wx-A1 alleles of common wheat (Triticum aestivum L.) on amylose and starch properties. — J. Cereal Sci. 54: 229–235, 2011.
Yan, L., Bhave, M., Fairclough, R., Konik, C., Rahman, S., Appels, R.: The genes encoding granule-bound starch synthases at the waxy loci of the A, B, and D progenitors of common wheat. — Genome 43: 264–272, 2000.
Yan, L., Bhave, M.: Characterization of waxy proteins and waxy genes of Triticum timopheevii and T. zhukovskyi and implications for evolution of wheat. — Genome 44: 582–588, 2001.
Zeng, M., Morris, C.F., Batey, I.L., Wrigley, C.W.: Sources of variation for starch gelatinization, pasting, and gelation properties in wheat. — Cereal Chem. 74: 63–71, 1997.
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This research was supported by the National Natural Science Foundation of China (U1403185) and the Key Fund Project of the Sichuan Provincial Department of Education (15ZA0021).
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Dai, S.F., Jiang, J.Q., Jia, Y.N. et al. Molecular characterization and phylogenetic analysis of Wx genes from three Taeniatherum diploid species. Biol Plant 60, 505–512 (2016). https://doi.org/10.1007/s10535-016-0609-3
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DOI: https://doi.org/10.1007/s10535-016-0609-3