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Monitoring of cultivar identity in tissue culture-derived date palms using RAPD and AFLP analysis

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Biologia Plantarum

Abstract

In the present study, two polymerase chain reaction (PCR)-based methods namely, randomly amplified polymophic DNA (RAPD) and amplification fragment length polymorphism (AFLP) were employed to assess genetic variations, which may appeared, in tissue culture-derived date palm (Phoenix dactylifera) offshoots. Analysis of RAPD banding patterns generated by PCR amplification using 37 random primers gave no evidences for somaclonal variations and the percentage of polymorphic bands in a total of 259 scored bands was zero. Meanwhile, analysis of AFLP banding patterns generated using 13 primer combinations pointed to minor genetic variations in the AFLP banding patterns. The percentage of genetic variations (polymorphism) in tissue culture-derived date palm offshoots belonging to cultivars Sakkoty, Gandila and Bertamoda was 2.6, 0.79 and 1 %, respectively, as revealed by AFLP analysis. The low percentage of genetic variations confirms the genetic stability of tissue culture-derived dry date palm cultivars.

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Abbreviations

AFLP:

amplification fragment length polymorphism

2,4-D:

2,4-dichlorophenoxyacetic acid

IAA:

indole-3-acetic acid

2ip:

2-isopentenyladenine

MS:

Murashige and Skoog

NAA:

α-naphthaleneacetic acid

PCR:

polymerase chain reaction

RAPD:

randomly amplified polymophic DNA

References

  • Adawy, S., Hussein, E., El-Khishin, D., Saker, M., El-Itriby, H.: Genetic variability studies and molecular fingerprinting of some Egyptian date palm (Phoenix dactylifera L.) cultivars. II-RAPD and ISSR profiling.-Arab J. Biotechnol. 5: 225–236, 2002.

    Google Scholar 

  • Adawy, S.S., Hussein, E., Ebtissam. H.A., Ismail, S.E., El-Itriby, H.A.: Genomic diversity in date palm (Phoenix dactylifera L.) as revealed by AFLP in comparison to RAPDs and ISSRs-Arab J. Biotechnol. 8: 99–114, 2005.

    Google Scholar 

  • Al-Khayri, J., Al-Bahrany, A.: Growth, water content and proline accumulation in drought-stressed callus of date palm.-Biol. Plant. 48: 105–108, 2004.

    Article  CAS  Google Scholar 

  • Bassam, J.B., Caetano-Anolles, G., Gresshoff, P.M.: Fast and sensitive silver staining of DNA in polyacrylamide gels.-Anal. Biochem. 196: 80–83, 1991.

    Article  PubMed  CAS  Google Scholar 

  • Bekheet, S.A., Taha, H.S., Saker, M.M.: Factors affecting in vitro multiplication of date palm.-Biol. Plant. 44: 431–433, 2001.

    Google Scholar 

  • Bekheet, S.A., Taha, H.S., Saker, M.M., Moursy, H.A.: A synthetic seed system of date palm through somatic embryogenesis encapsulation.-Ann. agr. Sci. Ain Shams Univ. (Cairo) 47: 325–337, 2002.

    Google Scholar 

  • Betal, S., Roy Chowdhury, P., Kundu, S., Sen Raychaudhuri, S.: Estimation of genetic variability of Vigna radiata cultivars by RAPD analysis.-Biol. Plant. 48: 205–209, 2004.

    Article  CAS  Google Scholar 

  • Bhansali, R., Kaul, R., Dass, H.: Mass cloning of date palm plantlets through repetitive somatic embryogenesis.-J. Plant. Anat. Morphol. 5: 73–79, 1988.

    Google Scholar 

  • Chowdhury, U., Vasil, I.: Molecular analysis of plants regenerated from embryogenic cultures of hybrid sugar cane cultivars (Saccharum spp.).-Theor. appl. Genet. 86: 181–188, 1993.

    Article  CAS  Google Scholar 

  • Dass, K., Kaul, R., Joshi, S., Bhansali, R.: In Vitro regeneration of date palm plantlets.-Curr. Sci. 58: 22–24, 1989.

    Google Scholar 

  • Gadalla, E.: Propagation of dry varieties of date palm.-Ph.D. Thesis. Faculty of Agriculture, Cairo University, Cairo 2003.

    Google Scholar 

  • Karp, A., Bright, J.: On the causes and origins of somaclonal variation.-Oxford Surv. Plant mol. cell Biol. 2: 199–234, 1985.

    Google Scholar 

  • McGreger, C., Lambert, C., Geryling, M., Louw, J., Warnich, L.: A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum) germplasm.-Euphytica 13: 135–144, 2000.

    Google Scholar 

  • Milbourne, D., Meyer, R.C., Bradshaw, J.E., Baird, E., Bonar, N., Provan, J., Powell, W., Waugh, R.: Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato.-Mol. Breed. 3: 127–136, 1997.

    Article  CAS  Google Scholar 

  • Moursy, H.A., Saker, M.M.: Date palm problems and the need for biotechnology.-Bull. Fac. Agr. Univ. Cairo 49: 315–330, 1998.

    Google Scholar 

  • Mukherjee, A., Acharya, L., Mattagajasingh, I., Panda, P.: Molecular characterization of three Heritiera species using AFLP markers.-Biol. Plant. 47: 445–448, 2003/4.

    CAS  Google Scholar 

  • Murashige, T., Nakano T.: Tissue culture as a potential tool in obtaining polyploidy plants.-J. Heredity 57: 115–118, 1966.

    Google Scholar 

  • Porebski, S., Baley, L.G., Baum, B.R.: Modification of a CTAB DNA extraction protocol for plants containing high polysaccharides and polyphenol components.-Plant mol. Biol. Rep. 15: 8–15, 1997.

    CAS  Google Scholar 

  • Rival, A., Tregear, J., Verdeil, J.L., Richaud, F., Beule, T., Duval, Y., Hartmann, C.: Molecular search for mRNA and genomic markers of the oil palm “mantled” somaclonal variations.-Acta Hort. 461: 165–171, 1998.

    CAS  Google Scholar 

  • Russell, J.R. Fuller, J.D., Macaulay, M., Hatz, B.G., Jahoor, A., Powell, W., Waugh, R.: Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs, and RAPDs.-Theor appl. Genet. 86: 975–984, 1997.

    Google Scholar 

  • Saker, M., Bekheet, S., Taha, H., Fahmy, A., Moursy, H.: Detection of somaclonal variations in tissue culture-derived date palm plants using isozyme analysis and RAPD fingerprints.-Biol. Plant. 43: 347–351, 2000.

    Article  CAS  Google Scholar 

  • Saker, M., Moursy, H., Bekheet, S.: In vitro propagation of Egyptian date palm: I-Morphogenic responses of immature embryos.-Bull. Fac. Agr. Univ. Cairo 49: 203–214, 1998.

    Google Scholar 

  • Saker, M.M., Kawshity, S., El-Bahr, M.K., Fahmy, A.: Flavonoid content and isozyme analysis of tissue culture-derived date palm clones.-Arab J. Biotechnol. 5: 207–216, 2002.

    Google Scholar 

  • Saker, M.M., Moursy, H.A.: Molecular characterization of Egyptian date palm: II-RAPD Fingerprints.-Arab J. Biotechnol. 2: 71–78, 1999.

    Google Scholar 

  • Salma, H., Saker, M.M.: DNA fingerprints of three different red palm weevil forms collected from infested Egyptian date palm orchards.-Arch. Phytopathol. Pflanz. 35: 1–8, 2002.

    Google Scholar 

  • Salman, M., Al-Jibouri, M., Al-Quadhy, K., Omar, S.: Isozyme and chromosomal analysis of tissue culture derived date palms.-Date Palm J. 6: 401–411, 1988.

    Google Scholar 

  • Sedra, M., Lashermes, P., Trouslot,, P., Comes, M.C., Haman, S.: Identification and genetic diversity analysis of date palm (Phoenix dactylifera L.) varieties from Morocco using RAPD markers.-Euphytica 103: 75–82, 1998.

    Article  CAS  Google Scholar 

  • Sharma, S.K., Knox, M.R., Ellis, T.N.: AFLP analysis of the diversity and phylogeny of lens and its comparison with RAPD analysis.-Theor. appl. Genet. 93: 751–758, 1995.

    Google Scholar 

  • Singh, M., Saroop, J., Dhiman, B.: Detection of intra-clonal genetic variability in vegetatively propagated tea using RAPD markers.-Biol. Plant. 48: 113–115, 2004.

    Article  CAS  Google Scholar 

  • Taylor, J., Fraser, A., Ko, L, Henry, J.: RAPD analysis of sugarcane during tissue culture.-In: Terzi, M., Cella, R., Falavigna, A. (ed.): Current Issues in Plant Molecular and Cellular Biology. Pp. 241–246. Kluwer Academic Publishers, Dordrecht 1995.

    Google Scholar 

  • Tisserat, B.: Factors involved in the production of plantlets from date palm callus cultures.-Euphytica 31: 201–214, 1982.

    Article  Google Scholar 

  • Virk, P.S., Zhu, J., Newbury, H., Bryan, G., Jackson, M., Ford-Lloyd, B.: Effectiveness of different classes of molecular markers for classifying and revealing variations in rice (Oryza sativa) germplasm.-Euphytica 112: 275–284, 2000.

    Article  CAS  Google Scholar 

  • Vos, P., Hogers, R., Bleeker, M., Reijans, M., Van de Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M., Zabeau, M.: AFLP: a new technique for DNA fingerprinting.-Nucleic Acids Res. 23: 4407–4414, 1995.

    PubMed  CAS  Google Scholar 

  • Williams, K., Kubelik, A., Livak, K., Rafalski, J., Tingey, V.: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.-Nucl. Acid Res 18: 6531–6535, 1990.

    CAS  Google Scholar 

  • Zaid, A., Hughes, H.: Water loss and polyethylene glycolmediated acclimatization of in vitro grown seedlings of 5 cultivars of date palm (Phoenix dactylifera L.) plantlets.-Plant Cell Rep. 14: 385–388, 1995.

    Article  CAS  Google Scholar 

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Correspondence to M. M. Saker.

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Saker, M.M., Adawy, S.S., Mohamed, A.A. et al. Monitoring of cultivar identity in tissue culture-derived date palms using RAPD and AFLP analysis. Biol Plant 50, 198–204 (2006). https://doi.org/10.1007/s10535-006-0007-3

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  • DOI: https://doi.org/10.1007/s10535-006-0007-3

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