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Coral diversity across a disturbance gradient in the Pulau Seribu reef complex off Jakarta, Indonesia

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Abstract

Very few coral reefs are located close enough to metropolitan cities to study the influence of large urban populations on reef communities. Here, we compare the impact of a large-scale disturbance gradient with local-scale disturbance on coral richness, cover, and composition in the Jakarta Bay and Pulau Seribu reef complex off Jakarta, Indonesia. We found no effect of local land-use type of coral reef islands on richness, composition or cover, nor did taxon richness differ among zones at the large-scale. There was, however, a pronounced difference in composition and coral cover among zones. Cover was very low and composition differed markedly in the near-shore zone 1 (Jakarta Bay) where human-induced disturbance is most intense. Cover was highest in the outlying reefs of zone 3. The highly perturbed zone 1 reefs were, furthermore, distinguished by the virtual absence of otherwise abundant coral taxa such as Acropora hyacinthus and Porites rus and the prevalence of taxa such as Oulastrea crispata and Favia maxima. Almost 60% of the spatial variation in composition was related to variation in shelf depth and island size. The importance of shelf depth was related to the prevalence of a strong environmental gradient in reef depth, pollution, and mechanical reef disturbance and salinity from Jakarta Bay to the outlying reefs. Although there was a significant univariate relationship between spatial variation in composition and distance, this did not enter into the multivariate model, except when presence–absence data was used, indicating that environmental processes are the primary structuring forces in determining local coral assemblage composition across the Pulau Seribu complex.

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References

  • Beck J., Schulze C.H., Linsenmair K.E. and Fiedler K. (2002). From forest to farmland: diversity of geometrid moths along two habitat gradients on Borneo. J. Trop. Ecol. 18: 33–51

    Article  Google Scholar 

  • Bellwood D.R. and Hughes T.P. (2001). Regional-scale assembly rules and biodiversity of coral reefs. Science 292: 1532–1534

    Article  PubMed  CAS  Google Scholar 

  • Best M.B., Hoeksema B.W., Moka W., Moll H., Sutarna I.N. and Suharsono (1989). Recent scleractinian coral species collected during the SnelliusII Expedition in eastern Indonesia. Neth. J. Sea Res. 23: 107–115

    Article  Google Scholar 

  • Bray J.R. and Curtis J.T. (1957). An ordination of the upland forest communities of Southern Wisconsin. Ecol. Monogr. 27: 325–349

    Article  Google Scholar 

  • Brown B.E. and Suharsono (1990). Damage and recovery of coral reefs affected by El Niño related seawater warming in the Thousand Islands, Indonesia. Coral Reefs 8: 163–170

    Article  Google Scholar 

  • Brown J.H., Whitman T.G., Morgan Ernest S.K. and Gehring C.A. (2001). Complex species interactions and the dynamics of ecological systems: long-term experiments. Science 293: 643–650

    Article  PubMed  CAS  Google Scholar 

  • Bruner A.G., Gullison R.E., Rice R.E. and da Fonseca G.A.B. (2001). Effectiveness of parks in protecting tropical biodiversity. Science 291: 125–128

    Article  PubMed  CAS  Google Scholar 

  • Casgrain P. 2001. Permute! 3.4.9. User’s Manual at Freely available at http://www.fas.umontreal.ca/biol/casgrain/en/labo/permute/index.html.

  • Chapin F.S., Zavaleta E.S., Eviner V.T., Naylor R.L., Vitousek P.M., Reynolds H.L., Hooper D.U., Lavorel S., Sala O.E., Hobbie S.E., Mack M.C. and Díaz S. (2000). Consequences of changing biodiversity. Nature 405: 234–244

    Article  PubMed  CAS  Google Scholar 

  • Chen C.A. (1999). Analysis of scleractinian distribution in Taiwan indicating a pattern congruent with sea surface temperatures and currents: examples from Acropora and Faviidae corals. Zool. Stud. 38: 119–129

    Google Scholar 

  • Clarke K.R. and Gorley R.N. (2001). Primer v5: user manual/tutorial. Primer-E Ltd., Plymouth, UK

    Google Scholar 

  • Coles S.L. (1996). Corals of Oman. Keech, Samdani and Coles, North Yorkshire, UK, 106

    Google Scholar 

  • Cope M. and Morton B. (1988). The scleractinian coral community at Hoi Ha Wan, Hong Kong. Asian Mar. Biol. 5: 41–52

    Google Scholar 

  • Cornell H.V. and Karslon R.H. (2000). Coral species richness: ecological versus biogeographical influences. Coral Reefs 19: 37–49

    Article  Google Scholar 

  • DeVantier L., Budiyanto A., Tuti Y., Imanto P., Ledesma R. and Suharsono (1998). Status of coral communities of Pulau Seribu (Indonesia). In: Soemodihardjo, S. (eds) Contending with Global Change 10. Proceedings: Coral Reef Evaluation Workshop, Pulau Seribu, Jakarta, Indonesia, 1995, pp 1–24. UNESCO, Jakarta

    Google Scholar 

  • Ditlev H. (1978). Zonation of corals (Scleractinia: Coelenterata) on intertidal reef flats at Ko Phuket, Eastern Indian Ocean. Mar. Biol. 47: 29–39

    Article  Google Scholar 

  • Djohani R.H. (1994). Patterns of spatial distribution, diversity and cover of corals in Pulau Seribu National Park: implications for the design of core coral sanctuaries. Proc. IOC-WESTPAC 3rd Int. Sci. Symp. Bali, Indonesia, 265–279

    Google Scholar 

  • Done T.J. (1982). Patterns in the distribution of coral communities across the Central Great Barrier Reef. Coral Reefs 1: 95–107

    Article  Google Scholar 

  • Dufrêne M. 1998. IndVal 2.0 programme at freely available at http://mrw.wallonie.be/dgrne/sibw/ outils/indval/home.html.

  • Dufrêne M. and Legendre P. (1997). Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol. Monogr. 67: 345–366

    Article  Google Scholar 

  • Duivenvoorden J.F., Svenning J.C. and Wright S.J. (2002). Beta-diversity in tropical forests. Science 295: 636–637

    Article  PubMed  CAS  Google Scholar 

  • Ellingsen K.E. (2002). Soft-sediment benthic biodiversity on the continental shelf in relation to environmental variability. Mar. Ecol. Prog. Ser. 232: 15–27

    Google Scholar 

  • English S., Wilkinson C. and Baker U. 1994. Survey manual for tropic marine resources. ASEAN Australia marine Science Project: Living Coastal Resources. Australian Institute of marine science, pp. 1–368.

  • Erdmann M. 1998. Destructive fishing practice in Kepulauan Seribu Archipelago. In: Proceedings of the Coral Reef Evaluation Workshop, Kepulauan Seribu, Jakarta, 11-20 September 1995, 84–89.

  • Githaiga-Mwicigi J.M.W., Fairbanks D.H.K. and Midgley G. (2002). Hierarchical processes define spatial patterns of avian assemblages restricted and endemic to the arid Karoo, South Africa. J. Biogeogr. 29: 1067–1087

    Article  Google Scholar 

  • Harger J.R.E. (1986a). Responses of coral reef communities to environmental variables in the Kepulauan Seribu island chain. UNESCO Rep. Mar. Sci. 40: 164–173

    Google Scholar 

  • Harger J.R.E. 1986b. Community structure as a response to natural and man-made environmental variables in the Pulau Seribu island chain. In: Soemodihardjo S. (ed.), Proceedings of MABCOMAR Regional Workshop on Coral Reefs Ecosystems: Their management practices and Research/Training needs, Bogor, 1986. UNESCO and LIPI, Jakarta, pp. 34–85.

  • Harger J.R.E. (1998). Sampling periodicity for tracking change in coral reefs: the case of Pulau Seribu. In: Soemodihardjo, S. (eds) Contending with Global Change 10. Proceedings: Coral Reef Evaluation Workshop, pp 25–26. Pulau Seribu, Jakarta, Indonesia

    Google Scholar 

  • Hoeksema B.W. (1989). Taxonomy, phylogeny and biogeography of mushroom corals (Scleractinia: Fungiidae). Zool. Verh. 254: 1–295

    Google Scholar 

  • Hoeksema B.W. 1990. Systematics and ecology of mushroom corals (Scleractinia: Fungiidae). PhD-thesis, Leiden University.

  • Hoeksema B.W. (1991). Control of bleaching in mushroom coral populations (Scleractinia: Fungiidae) in the Java Sea: stress tolerance and interference by life history strategy. Mar. Ecol. Prog. Ser. 74: 225–237

    Google Scholar 

  • Hoeksema B.W. (1992). The position of northern New Guinea in the center of marine benthic diversity: a reef coral perspective. Proc. 7th Int. Coral Reef Symp. 2: 710–717

    Google Scholar 

  • Hoeksema B.W. and Putra K.S. (2002). The reef coral fauna of Bali in the centre of marine diversity. Proc. 9th Int. Coral Reef Symp. 1: 173–178

    Google Scholar 

  • Hughes T.P., Baird A.H., Bellwood D.R., Card M., Connolly S.R., Folke C., Grosberg R., Hoegh-Guldberg O., Jackson J.B.C., Lough J.M., Marshall P., Nyström M., Palumbi S.R., Pandolfi J.M., Rosen B. and Roughgarden J. (2003). Climate changehuman impacts, and the resilience of coral reefs. Science 301: 929–933

    Article  PubMed  CAS  Google Scholar 

  • Hughes T.P., Baird A.H., Dinsdale E.A., Harriott V.J., Moltschaniwskyj N.A., Pratchett M.S., Tanner J.E. and Willis B.L. (2002). Detecting regional variation using meta-analysis and large-scale sampling: latitudinal patterns in recruitment. Ecology 83: 436–451

    Google Scholar 

  • Hungspreugs M. (1988). Heavy metals and other non-oil pollutants in Southeast Asia. Ambio 17: 178–182

    CAS  Google Scholar 

  • Karlson R.H. and Cornell H.V. (1998). Scale-dependent variation in local vs. regional effects on coral species richness. Ecol. Monogr. 68: 259–274

    Article  Google Scholar 

  • Karlson R.H. and Cornell H.V. (1999). Integration of local and regional perspectives on the species richness of coral assemblages. Am. Zool. 39: 104–112

    Google Scholar 

  • Karlson R.H. and Cornell H.V. (2002). Species richness of coral assemblages: detecting regional influences at local spatial scales. Ecology 83: 452–463

    Google Scholar 

  • Kuijper M.W.M. (2003). Marine and coastal environmental awareness building within the context of UNESCO’s activities in Asia and the Pacific. Mar. Pollut. Bull. 47: 265–272

    Article  PubMed  CAS  Google Scholar 

  • Lam K.K.Y. 2000. Early growth of a pioneer recruited coral Oulastrea crispata (Scleractinia, Faviidae) on PFA-concrete blocks in a marine park in Hong Kong, China.

  • Magalhaes M.F., Batalha D.C. and Collares-Pereira M.J. (2002). Gradients in stream fish assemblages across a Mediterranean landscape: contributions of environmental factors and spatial structure. Freshwater Biol. 47: 1015–1031

    Article  Google Scholar 

  • Margules C.R. and Pressey R.L. (2000). Systematic conservation planning. Nature 405: 243–253

    Article  PubMed  CAS  Google Scholar 

  • Moll H. and Suharsono (1986). Distribution, diversity and abundance of reef corals in Jakarta Bay and Kepulauan Seribu. UNESCO Rep. Mar. Sci. 40: 112–125

    Google Scholar 

  • Moll H. 1983. Lonation and Diversity of Scleractinia on Reefs off SW Sulawesi, Indonesia. Ph.D. Thesis, University of Leiden.

  • Noss R.F. (1990). Indicators for monitoring biodiversity: a hierarchical approach. Conserv. Biol. 4: 355–364

    Article  Google Scholar 

  • Ongkosongo O.S.R. 1986. Some harmful stresses to the Seribu coral reefs, Indonesia. In: Soemodihardjo S. (ed.), Proceedings of MAB-COMAR Regional Workshop on Coral Reefs Ecosystems: Their Management Practices and Research/Training Needs, Bogor, 1986. UNESCO and LIPI, Jakarta, pp. 133–142.

  • Ongkosongo O.S.R. and Sukarno (1986). Background to the study sites in the Bay of Jakarta and Kepulauan Seribu. UNESCO Rep. Mar. Sci. 40: 56–79

    Google Scholar 

  • Pandolfi J.M. (2002). Coral community dynamics at multiple scales. Coral Reefs 21: 13–23

    Google Scholar 

  • Pandolfi J.M., Bradbury R.H., Sala E., Hughes T.P., Bjorndal K.A., Cooke R.G., McArdle D., McClenachan L., Newman M.J.H., Paredes G., Warner R.R. and Jackson J.B.C. (2003). Global trajectories of the long-term decline of coral reef ecosystems. Science 301: 955–958

    Article  PubMed  CAS  Google Scholar 

  • Plotkin J.B. and Muller-Landau H.C. (2002). Sampling the species composition of a landscape. Ecology 83: 3344–3356

    Google Scholar 

  • Rees J.G., Setiapermana D., Sharp V.A., Weeks J.M. and Williams T.M. (1999). Evaluation of the impacts of land-based contaminants on the benthic faunas of Jakarta Bay, Indonesia. Oceanolica Acta 22: 627–640

    Article  Google Scholar 

  • McGeoch M.A., Chown S.L., Rensburg B.J. and Jaarsveld A.S. (1999). Conservation of heterogeneity among dung beetles in the Maputaland Centre of Endemism, South Africa. Biol. Conserv. 88: 145–153

    Article  Google Scholar 

  • Sala E., Aburto-Oropeza O., Peredes G., Parra I., Barrera J.C. and Dayton P.K. (2002). A general model for designing networks of marine reserves. Science 298: 1991–1993

    Article  PubMed  CAS  Google Scholar 

  • Scott P.J.B. (1984). The Corals of Hong Kong. Hong Kong University Press, Hong Kong, 1–112

    Google Scholar 

  • Sheppard C.R.C. (2003). Predicted recurrences of mass coral mortality in the Indian Ocean. Nature 425: 294–297

    Article  PubMed  CAS  Google Scholar 

  • Sørensen T. (1948). A method of establishing groups of equal amplitude in plant sociology based on similarity of species content. Det Kong Danske Vidensk Selsk Biol Skr (Copenhagen) 5: 1–34

    Google Scholar 

  • Stoddart D.R. and Brown B.E. (1986). Umbgrove’s islands revisited. UNESCO Rep. Mar. Sci. 40: 80–98

    Google Scholar 

  • Sukarno (1987). The effect of environmental trends and associated human damage on coral reefs in the Seribu islands, Jakarta. BIOTROP Spec. Publ. 29: 111–121

    Google Scholar 

  • Tomascik T., Suharsono and Mah A.J. 1994. Case histories: a historical perspective of the natural and anthropogenic impacts in the Indonesian Archipelago with a focus on the Kepulauan Seribu, Java Sea. In: Ginsburg R.N. (ed.), Proceedings of the Colloquium on Global Aspects of Coral reefs: Health, Hazards and History, 1993. RSMAS, University of Miami, pp. 304–310.

  • Umbgrove J.H.F. (1928). De koraalriffen in de baai van Batavia. Wetensch Meded Dienst Mijnb Ned Indie 7: 1–69

    Google Scholar 

  • Umbgrove J.H.F. (1929). The influence of the monsoons on the geomorphology of coral islands. Proc. 4th Pac. Sci. Congr. 2A: 49–54

    Google Scholar 

  • Umbgrove J.H.F. (1939). Madreporaria from the bay of Batavia. Zool. Meded. 22: 1–64

    Google Scholar 

  • Umbgrove J.H.F. (1947). Coral reefs in the East Indies. Bulletin of the Geological Society of America 58: 729–778

    Article  Google Scholar 

  • Uneputty P.A. and Evans S.M. (1997). Accumulation of beach litter on islands of the Pulau Seribu Archipelago, Indonesia. Mar. Pollut. Bull. 34: 652–655

    Article  CAS  Google Scholar 

  • Vail L. and Thamrongnawasawat T. (1998). Echinoderms associated woth coral reefs in Jakarta Bay and Kepulauan Seribu. In: Soemodihardjo, S. (eds) Contending with Global Change 10. Proceedings: Coral Reef Evaluation Workshop, Pulau Seribu, Jakarta, Indonesia, 1995, pp 55–65. UNESCO, Jakarta

    Google Scholar 

  • Veron J.E.N. (1995). Corals in Space and Time. Cornell University Press, Ithaca, 1–321

    Google Scholar 

  • Veron J.E.N. and Marsh L.M. (1988). Hermatypic corals of western Australia. Rec. West Aust. Mus. Suppl. 29: 1–136

    Google Scholar 

  • Veron J.E.N. and Pichon M. (1976). Scleractinia of Eastern Australia, Pt 1. Aust. Inst. Mar. Sci. Monogr. Ser. 1: 1–86

    Google Scholar 

  • Veron J.E.N. and Pichon M. (1979). Scleractinia of Eastern Australia, Pt 3. Aust. Inst. Mar. Sci. Monogr. Ser. 4: 1–459

    Google Scholar 

  • Veron J.E.N. and Pichon M. (1982). Scleractinia of Eastern Australia, Pt 4. Aust. Inst. Mar. Sci. Monogr. Ser. 5: 1–159

    Google Scholar 

  • Veron J.E.N., Pichon M. and Wijsman-Best M. (1977). Scleractinia of Eastern Australia, Pt 2. Aust. Inst. Mar. Sci. Monogr. Ser. 3: 1–233

    Google Scholar 

  • Veron J.E.N. and Wallace C.C. (1984). Scleractinia of Eastern Australia, Pt 5. Aust. Inst. Mar. Sci. Monogr. Ser. 6: 1–485

    Google Scholar 

  • Verwey J. (1931). Coral reef studies III. Geomorphological notes on coral reefs of Batavia bay. Treubia 13: 199–215

    CAS  Google Scholar 

  • Wallace C.C. (1999). Staghorn Corals of the World. CSIRO, Collingwood, 1–421

    Google Scholar 

  • Wallace C.C., Hoeksema B.W., Bellwood D.R., Hutchings P.A., Barber P.H., Erdmann M., Wolstenholme J. and Paulay (2002). Nature and origins of unique high diversity reef faunas in the Bay of Tomini, Central Sulawesi: the ultimate “centre of diversity”?. Proc. 9th Int. Coral Reef Symp. 1: 185–192

    Google Scholar 

  • Warwick R.M., Clarke K.R. and Suharsono (1990). A statistical analysis of coral community responses to the 1982–83 El Niño in the Thousand Islands, Indonesia. Coral Reefs 8: 171–179

    Article  Google Scholar 

  • Williams T.M., Rees J.G. and Setiapermana D. (2000). Metals and trace organic compounds in sediments and waters of Jakarta Bay and the Pulau Seribu Complex, Indonesia. Mar. Pollut. Bull. 40: 277–285

    Article  CAS  Google Scholar 

  • Willoughby N.G. (1986). Man-made flotsam on the strand-lines of the Thousand Islands (Kepuluan Seribu) Jakarta, Java. UNESCO Rep. Mar. Sci. 40: 157–163

    Google Scholar 

  • Yamashiro H. (2000). Variation and plasticity of skeletal color in the zebra coral Oulastrea crsipata. Zool. Sci. 17: 827–831

    Article  Google Scholar 

  • Zorn P., Stephenson W. and Grigoriev P. (2001). An ecosystem management program and assessment process for Ontario national parks. Conserv. Biol. 15: 353–362

    Article  Google Scholar 

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Cleary, D. .R., Suharsono & Hoeksema, B.W. Coral diversity across a disturbance gradient in the Pulau Seribu reef complex off Jakarta, Indonesia. Biodivers Conserv 15, 3653–3674 (2006). https://doi.org/10.1007/s10531-004-4692-y

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