Abstract
Invasion risks may be influenced either negatively or positively by climate change, depending on the species. These can be predicted with species distribution models, but projections can be strongly affected by the source of the environmental data (climate data source, Global Circulation Models GCM and Shared Socio-economic Pathways SSP). We modelled the distribution of Phelsuma grandis and P. laticauda, two Malagasy reptiles that are spreading globally. We accounted for drivers of spread and establishment using socio-economic factors (e.g., distance from ports) and two climate data sources, i.e., Climatologies at High Resolution for the Earth’s and Land Surface Areas (CHELSA) and Worldclim. We further quantified the degree of agreement in invasion risk models that utilised CHELSA and Worldclim data for current and future conditions. Most areas identified as highly exposed to invasion risks were consistently identified (e.g. in Caribbean and Pacific Islands). However, projected risks differed locally. We also found notable differences in quantitative invasion risk (3% difference in suitability scores for P. laticauda and up to 14% for P. grandis) under current conditions. Despite both species native distributions overlapping substantially, climate change will drive opposite responses on invasion risks by 2070 (decrease for P. grandis, increase for P. laticauda). Overall, projections of future invasion risks were the most affected by climate data source, followed by SSP. Our results highlight that assessments of current and future invasion risks are sensitive to the climate data source, especially in islands. We stress the need to account for multiple climatologies when assessing invasion risks.
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Introduction
Invasive Alien Species (IAS) are increasingly raising concerns about their impact in the future, notably due to their rising economic cost and ecological impact (Diagne et al. 2021). Invasion risks can be influenced by climate change either positively or negatively depending on the species (Bellard et al. 2013). The assessment of invasion risks and how they will be influenced by climate change has become paramount to the development of proactive conservation actions.
Early detection is a key determinant to prevent invasions, suggesting the urgent need to identify priority areas for surveillance efforts. In this regard, a widely advocated management tool in conservation biology is Species Distribution Modelling (SDM; Gallien et al. 2012; Lanner et al. 2022). This approach consists of identifying the environmental factors explaining the distribution of a species and predicting areas of high environmental suitability. In the case of IAS that are expanding, such tools allow identification of areas that have not yet been invaded, but where environmental conditions are suitable and where factors of introduction and spread are present (e.g. maritime traffic). The distribution of IAS may be explained and predicted by a combination of environmental and socio-economic predictors (Bellard et al. 2016; Lanner et al. 2022). Environmental predictors (e.g. climate and habitat) may be used to identify areas where a candidate IAS is likely to further establish, while socio-economic predictors (e.g., proximity to ports and airports) represent factors of spread and entry points (Bertelsmeier and Courchamp 2014; Hulme 2021). The areas at high risk of invasion can then be prioritised for surveillance efforts.
Invasion risks may vary with climate change, and this can be assessed using SDMs that incorporate future climate projections (Bellard et al. 2013; Gillard et al. 2017). Such projections vary depending on the chosen scenario (e.g., scenarios of projected socioeconomic global change such as Shared Socio-economic Pathways, SSP, or scenarios of greenhouse gas emissions, such as Representative Concentration Pathways, RCP) and the Global Circulation Model (GCM, i.e., a methodological aspect). These factors can strongly affect SDMs and induce uncertainty in assessments of climate suitability (Buisson et al. 2010). More recently, the choice of the source of climate data (e.g., CHELSA or Worldclim; Fick and Hijmans 2017; Karger et al. 2017) used for model calibration has been identified as a major source of uncertainty in SDMs (Baker et al. 2016; Dubos et al. 2022a). These climatologies were computed with different approaches, which result in significant variations in the geographical projection of climate variables for the recent time period, which in turn can dramatically affect model calibration and projection of climate change effects on species distributions. For instance, projections based on Wordclim data suggested a dramatic decline in climate suitability for Phelsuma borbonica in Reunion Island, while almost no effect was predicted when calibrated on CHELSA (Dubos et al. 2022a). The uncertainty related to climate data source can be of similar magnitude to that of the GCM, the selection of predictors (Dubos et al. 2022a) or the modelling technique (Stuart et al. 2022). In spite of this, most SDM studies aimed at projecting future distributions use climate data from a single source. To our knowledge, no study has considered the uncertainty induced by the source of climate data in invasion risk assessments.
Reptiles represent one of the costliest invasive animal taxa in terms of damage and management, with an estimated economic cost of more than one billion dollars per year in the last decades (Diagne et. al. 2021). The increasing pace of reptile invasions, along with the associated ecological (e.g., trophic disruptions), evolutionary/conservation (e.g., through hybridisation or introgression), and sanitary costs (e.g. pathogen transmission) have led to a growing attention towards some species (Reed and Kraus 2010; Sauteur et al. 2013; Kraus 2015; Vuillaume et al. 2015; Bellinati et al. 2022; Breuil et al. 2022). However, invasive alien reptiles remain understudied compared to invertebrate and plant species (e.g., Bellard et al. 2013) and there is a need to fill a knowledge gap in how climate change influences reptile invasion risks.
The Madagascar giant day gecko Phelsuma grandis Gray 1870 and the Gold-dust day gecko Phelsuma laticauda Boettger 1880 are two Malagasy reptiles that have spread throughout the world. Phelsuma grandis is one of the largest living species of the genus, reaching up to 30 cm in total length (i.e. twice the length of most Phelsuma species). Phelsuma laticauda is a medium-sized gecko, reaching up to 13 cm in total length; however, the species is considered an aggressive competitor towards other smaller gecko species in French Polynesia and Reunion Island (Lund 2015; Deso et al. 2023), but also in its native range (Gehring et al. 2010). Due to their human-mediated spread and resulting risks to native communities, both are considered IAS outside of their native range, including areas in central-eastern Madagascar, Mauritius, Reunion Island, Florida, French Polynesia and Hawaii (Ota and Ineich 2006; Krysko and Borgia 2012; Dubos 2013; Buckland et al. 2014; Dubos et al. 2014; Lund 2015; Fieldsend and Krysko 2019; Fieldsend et al. 2020, 2021c). The coexistence of Phelsuma spp. (or other reptiles sharing similar habitats such as anoles) may cause shifts in habitat use through competition (Harmon et al. 2007; Porcel et al. 2021; Wright et al. 2021) that might be detrimental to the more specialised native species. In Mauritius, the introduction of P. grandis was associated with the extirpation of four populations of endemic Phelsuma species (Buckland et al. 2014). Both P. grandis, P. laticauda as well as several other Phelsuma species (e.g., P. kochi) are known to prey on other gecko specimens of smaller size (Gehring et al. 2010; Buckland et al. 2014; Rakotozafy 2019), which suggests potential predation risks to smaller species or juveniles of similar-sized species. Their introduction also raised concerns regarding the risk of disease and parasite transmission to native species (Dervin et al. 2014; Barnett et al. 2018; Fieldsend and Krysko 2019; Fieldsend et al. 2021b; Unger et al. 2022), despite no evidence of cross-species infection having been found so far (Goldberg and Bursey 2000; Leinwand et al. 2005). The spread of P. grandis and P. laticauda has led to increased attention regarding the conservation status of the native (and often endemic) fauna from Madagascar, Mauritius and Reunion Island (Dubos 2013; Buckland et al. 2014; Dubos et al. 2014). Their co-occurrence with native Phelsuma species has raised concerns regarding the long-term persistence of P. lineata, P. serraticauda, P. inexpectata, P. borbonica, P. cepediana, P. guimbeaui, P. ornata, and P. rosagularis (Andreone et al. 2003; Glaw and Vences 2007; D’Cruze et al. 2009; D’Cruze and Kumar 2011; Blumgart et al. 2017; Porcel et al. 2021). Both the IAS considered here are commonly found in urbanised areas, on ornamental plants and in orchards, as well as primary rainforests, reflecting a large niche flexibility that may help to explain successful establishments (Fieldsend et al. 2021a). This illustrates the need to characterise their climatic niche in order to identify potential areas at risk of invasion at the global scale.
Here we modelled the distribution of P. grandis and P. laticauda under current and projected future climatic conditions, and predicted their invasion risks at the global scale. To determine whether the choice of climate data source affects invasion risk assessments, we quantified the degree of agreement between current invasion risks based on the two main climate data sources available at the global scale (i.e., CHELSA and Worldclim). We account for multiple sources of uncertainty for each climate data by including two different climate scenarios (based on the SSP scenarios) and for each of these scenarios, multiple General Circulation models (GCMs) from the Coupled Model Intercomparison Project 6. To provide the most reliable conservation guidelines, we identify areas that are in agreement between projections derived from both climate data sources, and point out priority areas for monitoring to enhance the chances of early detection and prevent potential invasions.
Methods
Both P. grandis and P. laticauda are found in a variety of habitat types, including primary forests, highly degraded forests, orchards, and urbanised habitats (D’Cruze et al. 2009; D’Cruze and Kumar 2011; Dubos et al. 2014; Blumgart et al. 2017). We thus assume that habitat variables represent poor predictors of their environment, and that the species’ distribution may be better predicted by climate variables (e.g., Fieldsend et al. 2021a). Our analysis includes socio-economic factors such as proximity to roads, ports and airports, which are factors of spread or potential entry points.
Occurrence data
We retrieved occurrence data from the literature and opportunistic observations, both from native and non-native ranges (Madagascar, Mauritius, Reunion Island, Florida, French Polynesia and Hawaii; Glaw and Vences 2007; Raxworthy et al. 2007; Pearson and Raxworthy 2009; Dubos 2013; Buckland et al. 2014; Dubos et al. 2014; Fieldsend and Krysko 2019; Fieldsend et al. 2021a, 2021c; Porcel et al. 2021), all of which were included for model calibration. In total, we obtained 338 unique occurrence records for P. grandis and 113 for P. laticauda. We thinned the data to avoid pseudo-replication and mitigate spatial biases, selecting one occurrence per pixel at the resolution of the environmental variables (5 arc minutes, see below). This resulted in a sample of 91 presence points for P. grandis based on CHELSA, of which 50 are within the native area and 41 in non-native areas (90 based on Worldclim; 49 and 41 points in native and non-native areas, respectively). For P. laticauda, the final sample represents 58 presence points, of which 19 are distributed in the native area and 39 in the non-native area (59 points based on Worldclim; 18 and 41 points in native and non-native areas, respectively).
Climate data
We used 19 bioclimatic variables (description available at https://www.worldclim.org/data/bioclim.html; see also Booth et al. 2014) at 5 arc minutes (approximately 10 km) resolution for the current and future (2070) climate from two sources: CHELSA version 1.2 (Karger et al. 2017) and Worldclim global climate data version 2.1 (Fick and Hijmans 2017) and version 1.4 for future projections (to match the GCMs available in CHELSA at the time of model computing). These data sources used different methods to compute the climatologies and result in different maps (see Fig. S1). Worldclim is based on interpolated data with elevation and distance to the coast as predictors in addition to satellite data (Fick and Hijmans 2017), while CHELSA is based on statistical downscaling for temperature, and precipitation estimations incorporating orographic factors (i.e., wind fields, valley exposition, boundary layer height; Karger et al. 2017). We decided to include all 19 bioclimatic variables because both temperature and precipitation are related to the species’ biology, and we used a statistical process to select the most relevant ones (see below). For each climate data source, we selected one predictor variable per group of inter-correlated variables to avoid collinearity (Pearson’s r > 0.7; Dormann et al. 2013) using the removeCollinearity function of the virtualspecies R package (Leroy et al. 2016). When mean values were collinear with extremes, we selected the variables representing extreme conditions (e.g., warmest/driest condition of a given period) because these are more likely to drive mortality and local extirpation, and be causally related to the species’ establishment (Parmesan et al. 2000; Mazzotti et al. 2016; Maxwell et al. 2019).
For future projections, we used three Global Circulation Models (GCMs; i.e., BCC-CSM1-1, MIROC5, and HadGEM2-AO) and two greenhouse gas emission scenarios (the most optimistic RCP26 and the most pessimistic RCP85) to consider a wide panel of possible invasion risk in 2070. We selected the same GCMs and scenarios for both climate data sources to be able to quantify the variation related to each of these aspects (see below, ‘Quantifying the level of agreement in current invasion risks between climate data’ subsection).
Socio-economic factors
We used distance to port and airports as factors of introduction and proxies for propagule pressure (Bellard et al. 2016). We obtained port data from the World Port Index (https://msi.nga.mil/Publications/WPI, accessed December 2020) and airport data from the OpenFlights Airport database (https://openflights.org/data.html, accessed December 2020). We used distance to main roads and highways as an indicator of potential spread, since Phelsuma species can be accidentally transported by terrestrial vehicles over short distances (Deso 2001). We selected the largest two categories of road size (highways and primary roads) and computed distance from roads using the Global Roads Inventory Project (GRIP4) dataset (Meijer et al. 2018).
Distribution modelling
We modelled and projected species distributions using an ensemble model approach (four modelling techniques). We selected a set of top-performing modelling techniques according to Valavi et al. (2021). These were Random Forest down-sampled (RF down-sampled, i.e., RF parametrised to deal with a large number of background samples and few presence records; Prasad et al. 2006), and three of the best performing models available in the biomod platform (Thuiller et al. 2009): a recent implementation of MaxEnt, i.e. MaxNet (Phillips 2017), Generalised Boosted regression Model (GBM, also known as Boosted Regression Tree, BRT; Elith et al. 2008) and Generalised Additive Model (GAM; Guisan et al. 2002). RF down-sampled was set to run 1000 bootstrap samples/trees.
Our dataset consisted of presence-only data. Hence, we generated pseudo-absences at locations where the species has never been detected (Sillero et al. 2021). We first generated five different sets of 50,000 randomly-selected pseudo-absences (or background points). Our occurrence data were retrieved from opportunistic observations, and were thus subject to spatial biases (e.g., more observations around populated or accessible areas). To account for sample bias, we reperformed all calculations applying a correction based on a different pseudo-absence generation strategy (both corrected and uncorrected models are needed to reliably measure the effect of sample bias correction; Dubos et al. 2022c; details below). In corrected models, we produced five sets of pseudo-absences concentrated around the presence points to reproduce the spatial bias of the sample, following Phillips et al. (2009). We used a null geographic model (i.e., a map of the geographic distance to presence points) generated with the dismo R package (Hijmans 2012) and used it as a probability weight for pseudo-absence selection. This technique was deemed appropriate for IAS that are still expanding (i.e., not at equilibrium), because it reduces the generation of pseudo-absences in regions that are suitable but not yet invaded (e.g., Lanner et al. 2022). Since no independent data are available to assess the effect of sample bias correction, we used the Relative Overlap Index (ROI) based on Schoener’s D overlap (Dubos et al. 2022c). The ROI enables assessment of whether the effect of correction is negligible compared to the variability between model runs. It computes (1) the mean overlap between the uncorrected and the corrected predictions (i.e., the absolute effect of correction), and (2) the overlap between every pair of model replicates (between each pseudo-absence and cross validation runs, individually for each modelling technique, i.e., model stochasticity). We computed the ROI as follows:
where \(\overline{{D_{0} }}\) is the mean overlap between model runs of the corrected group and \(\overline{D}\left( {p_{x} ,p_{y} } \right)\) is the mean overlap between runs of the uncorrected and corrected models. A value close to 0 represents negligible effect of correction (i.e., the effect of sample bias correction is of same magnitude than model stochasticity). A value close to 1 represents a week effect of correction and strong model stochasticity. A negative value suggests that the correction effect is of lower magnitude than the model stochasticity and hence, irrelevant. We assumed that the correction affected our predictions if the overlaps between uncorrected and corrected groups were smaller than the overlaps between runs (i.e., ROI > 0; Dubos et al. 2022c).
We selected environmental predictors using a statistical approach, incorporating uncorrelated variables for which we had hypotheses of causality in the establishment or spread of the species. For each climate data source and species individually, we assessed the relative importance of each variable kept with 30 permutation per modelling technique (total = 120 per variable, data source, and species). The variables included in the final models were those with the highest relative importance. These were selected using the elbow criterion at the upper hinge of variable importance (i.e., the 25% best performing models per variable), setting a maximum of nine for P. grandis and five variables selected for P. laticauda following the ‘number of observations /10 predictors’ rule-of-thumb proposed by Harrell et al. (1996) (see also Guisan and Zimmermann 2000). In total, we computed 400 models per species (4 modelling techniques × 5 pseudo-absence runs × 5 cross-validation runs × 2 modalities of sample bias correction × 2 climate data source) for the current distribution, and 2400 projections using future climate data (400 models × 3 GCMs × 2 SSPs).
Model evaluation
Spatial partitioning is generally recommended to reduce spatial autocorrelation between training and testing data (i.e., block cross-validation; Valavi et al. 2019). In our case, occurrence data were highly aggregated, which results in strong unbalances between blocks. Therefore, we randomly partitioned the data, with 80% of the data being used for model calibration (training) and 20% for model evaluation (testing). This process was repeated five times (cross-validation runs) for each species, pseudo-absence dataset, correction modality, and climate data source. We assessed model performance using the Boyce index (Hirzel et al. 2006), assumed to be the best evaluation metric for pseudo-absence data (Leroy et al. 2018). A Boyce index value of 1 suggests that models predicted the presence points well, while a value of 0 means that model performance was not better than random. For ensemble models (i.e., the mean predictions across modelling techniques, pseudo-absence runs, and cross-validation runs for highly performing models), we discarded models for which the Boyce index was below 0.5.
Quantifying the level of agreement in current invasion risks between climate data
Treating each species and sample bias correction modality separately, we compared the predicted current invasion risks obtained from CHELSA and Worldclim data. Firstly, for each species, we calculated an index of difference between CHELSA and Worldclim by computing the absolute difference between the summed suitability values of all pixels of the ensemble map. We divided this difference by the summed suitability values of all pixels for the CHELSA dataset, in order to express the results as a percentage of absolute difference of Worldclim predictions over CHELSA predictions:
where PCHELSA and PWorldclim are the suitability score of pixel j for CHELSA and Worldclim projections, respectively. This difference in suitability scores indicates the overall level of agreement between two projections across the whole predicted area. A high difference in suitability scores suggests a strong effect of the climate data source, either in terms of overall suitability scores or surface of suitable environment.
Secondly, we computed an alternative index which takes into account spatial information, i.e., spatial overlap (Muscatello et al. 2021; Petford and Alexander 2021; Dubos et al. 2022a). We computed the Schoener’s D overlap between projections of current invasion risk between predictions based on the two climate datasets considered. A value of 1 indicates a perfect spatial match between the two projections produced (i.e., no effect of climate data source) and a value of 0 represents a perfect mismatch. We computed the Schoener’s D overlap between CHELSA and Worldclim projections using the ENMTools R package (Warren et al. 2010). Schoener’s D was computed as follows:
where pxi and pyi are the normalised suitability scores for uncorrected x and corrected y prediction in grid cell i, for each species, cross-validation run, and pseudo-absence run individually.
Identifying priorities for surveillance
To identify areas at highest overall risk of invasion, we ranked countries and islands according to the invasion risk quantified for each species in the previous steps. We used border data obtained from the Global ADMinistrative area (GADM v4.0.4.; https://gadm.org/data.html) to associate the predicted invasion risks with the corresponding country, island, or archipelago (all territories with an ISO country code, e.g., Madagascar, Reunion Island, Comoros). We then computed the mean invasion risk per territory. To do so, we extracted the predicted values of our ensemble models and averaged them across all pixels of the territory. This approach may downplay the risks in large countries with only small regions at risk, but is useful for our study species which are mostly found in small islands. Since we had no a priori expectation on which climate data source is best for ecological modelling, we based the ranking on the mean value between predictions obtained between CHELSA and Worldclim. To account for uncertainty, we penalised the mean prediction by subtracting its standard deviation (mean—SD), following the approach developed by Kujala et al. (2013) applied to single species (Dubos et al. 2022a). This enabled us to prioritise areas where the invasion risk is most-consistently identified as high across climate data sources and model replicates. We refer to these penalised mean predictions as consensus invasion risk. For comparison, we also provide the rankings obtained from both individual climate data sources (tables available in supporting information).
Projected effect of future climate change
We projected the predicted values of our models on future climate data. For each species, climate data, GCM, and scenario individually, we quantified the difference between current and future predicted invasion risk with the two aforementioned complementary approaches, i.e., difference in total (unpenalised) suitability scores and spatial overlap (Dubos et al. 2022a). We computed two indices of change in invasion risk (we further refer to these indices as Species Range Change SRC, following Buisson et al. 2010 and Baker et al. 2016). We first computed the difference between the summed suitability scores of future and current predictions and show the proportion of increase/decrease relative to current suitability scores. Secondly, we quantified spatial suitability change using the Schoener’s D overlap to account for spatial information (for instance, allowing us to identify distributional shifts even when the total suitability does not change). We verified that models were well-informed for predictions on novel (future) data using clamping masks and examining the shape of predictor responses.
Quantifying the uncertainty related to climate data in future projections
We quantified the uncertainty in SRC (difference in summed scores and Schoener’s D) related to the climate scenarios, GCMs, and climate data source. For the difference in summed scores, we quantified the proportion of deviance explained by climate data modalities using linear models (LM, assuming Gaussian errors), with SRC as the response variables, and the aforementioned sources of uncertainty as explanatory variables, following Baker et al. (2016). We then assessed the proportion of deviance explained by each source of uncertainty f as follows:
where, Pf = proportion of deviance explained by factor f, D1 = deviance of full model, Df = deviance of full model minus factor f, and D0 = deviance of null model.
We repeated this analysis for the Schoener’s D overlap using beta-regression GLM instead of LM, since overlap measures range continuously between 0 and 1 (glmmTMB R package; Brooks et al. 2019).
Results
Species distribution models
We selected six or seven variables for P. grandis depending on climate data source and five for P. laticauda (Table 1; Fig. S3–S10). The current distribution of both species was best explained by socio-economic variables ‘distance to ports’ and/or ‘distance to airports’ (Table 1) and climatic variables related to temperature variability (diurnal range bio2 and temperature seasonality bio4) or minimum temperature (bio6). Precipitation of warmest quarter (bio18) was also important for P. grandis. For this species, we discarded ‘distance to roads’ because this predictor produced spurious results, which did not correspond to our biological hypothesis (i.e., increasing invasion risk after 100 km distance) and would reduce the transferability of our models. Both species were present in the proximity of ports (approximately within 250 km) and airports (approx. within 100 km), in areas with low temperature variability, and with high minimum temperatures (> 10 °C on average for coldest month) and in the case of P. grandis, avoiding dry regions (summer precipitation > 250 mm; Fig. S5–S6, S9–S10).
Models generally did a good job of predicting known presences (most Boyce indices > 0.5), with higher Boyce indices for Worldclim-based predictions compared to CHELSA-based predictions (Table 2; Fig. S11–S12). The effect of sampling bias correction was more important than model stochasticity (ROI = 0.07 with CHELSA, ROI = 0.09 with Worldclim for both species). We discarded 5 to 25 poorly performing models out of 100 per modality (species, climate data source, and sample bias correction; Table 2).
Current invasion risks
We identified important invasion risks in multiple regions throughout the world, mostly in tropical islands (Fig. 1, 2). In both species, we found the highest invasion risks in islands of the Indian Ocean (e.g., Comoros, Mayotte), Pacific Ocean (e.g., Niue, New Caledonia), the Caribbean region (especially in the Greater Antilles and the Bahamas), both coasts of central Africa (Angola, Congo, Tanzania, Mozambique), and the Indo-Pacific region (Philippines, Vietnam, New Guinea). Suitable conditions are also met in Cape Verde and the coast of Brazil for both species. We found different invasion risks between both species in the Lesser Antilles, Vanuatu, and the Hawaiian archipelago, with greater invasion risks for P. laticauda in these regions (Fig. 3).
Current consensus global invasion risks for Phelsuma grandis. Consensus invasion risk was obtained from mean predictions between all simulations (including models based on CHELSA and Worldclim climate data), subtracting the standard deviation to account for uncertainty. Closed black circles represent the presence points. Climate data source-specific maps are available in supporting information (Fig. S13–S16)
Current consensus global invasion risks for Phelsuma laticauda. Consensus invasion risk was obtained from mean predictions between all simulations (including models based on CHELSA and Worldclim climate data), subtracting the standard deviation to account for uncertainty. Closed black circles represent the presence points. Climate data source-specific maps are available in supporting information (Fig. S17–S20)
Predicted current invasion risks of Phelsuma grandis (top) and Phelsuma laticauda (bottom) based on two sources of climate data (left: CHELSA; right: Worldclim) in the Caribbean region. Predicted values are averaged across model replicates (n = 100 per species and climate data source) and are penalised by uncertainty (standard variation across replicates). Red represents high invasion risk with high certainty, blue represents moderate invasion risk and grey represents areas where uncertainty was higher than invasion risks
Projections of current invasion risks differed locally when calibrated using the different climate sources (see example of the Caribbean in Fig. 3; individual ensemble models are available in supporting information, Fig. S13–S20). We found notable differences between both projections in summed suitability scores and spatial overlap (Table 3). Climate data source affected the ranking of invasion risk per territory, with sometimes dramatic differences (e.g., 36 rank difference for Saint Helena, Ascension, and Tristan da Cunha for P. grandis; 30 rank difference for Saint Martin for P. laticauda; Table S1, S2).
Future invasion risks
We predict a decrease in invasion risk by 2070 in most cases (Fig. 4; S19–22). We found important differences between projections based on different climate data, with higher SRC for Worldclim-based projections overall (Fig. 4). For P. grandis, we predict a decrease in total invasion risk in all cases, ranging between 8.6 and 16.1% (total scores), and a spatial change ranging between 9.9 and 19.4% (1-Schoener’s D overlap) depending on the scenario and the climate data. For P. laticauda, projections of climate change effect differed between climate data sources, ranging between − 4.7% (decline) and + 18.8% (increase) in overall invasion risk, and a spatial change ranging between 11.7 and 20.8%. Clamping masks indicated novel conditions for one variable throughout the native and invaded range, for Worldclim only (Fig. S25, S26). These novel conditions seem to be mostly driven by maximal temperatures (Bio5; Fig. S27). Given the hump-shaped relationships between our predictors and suitability (Fig. S5, S9, S10), clearly identifying suitable windows of climate conditions, there is little risk of uncertain predictions due to extrapolation.
Effect of climate data source on Species Range Change (SRC, overall difference between current and future suitability, here expressed as a proportion relative to current suitability) and Schoener’s D overlap (percentage of common spatial information between current and future projections) for the invasive P. grandis and P. laticauda. Models were corrected for sample bias. Indices were computed individually for each climate data source, scenario (SSP) and Global Circulation models (GCMs, represented by the black points). Boxes represent the 25th and 75th percentile and the bars represent the median
In most cases, the source of climate data was the most important driver of uncertainty in future invasion risk projections (Fig. 5). In terms of total scores (SRC), the source of climate data explained as much uncertainty as the scenario for P. laticauda. Otherwise, climate data source was by far the largest driver of uncertainty in terms of spatial overlap for both species.
Proportion of deviance explained by climate data modalities (Scenario, Global Circulation Model and climate data source) in projected climate change effect (Overlap and Suitability scores) on a Phelsuma grandis and b Phelsuma laticauda. Overlap was computed with Schoener’s D between current and future projections; suitability scores are the difference in total scores between current and future projections
Discussion
We modelled the current and future distribution of two invasive alien reptile species using a recently advocated approach, accounting for socio-economic factors and a wide panel of climate data. We identified several areas at high risk of invasion, findings that were robust to the choice of climate data. We propose that these areas be considered priority areas for surveillance efforts and monitoring, but areas identified at risk by single climate data must be also considered. We found important differences relating to the source of climate data. Overall, we predict that climate change will reduce invasion risks for P. grandis and slightly increase risks for P. laticauda.
Drivers of spread and establishment
The spread of both species is driven by maritime and/or aerial transportation. The importance of proximity to ports and airports may be caused by the insularity of our study species (ports and airports are present in most islands). However, with our pseudo-absence sampling strategy (being more concentrated around presence points), the detection of this effect of these variables suggests that species are more present near ports and airports than would be expected by chance. Models identified an effect of proximity to ports and airports within relatively long distances (250 and 100 km, respectively), which may be driven by occurrences points located in continental regions (Madagascar and Florida). This may explain the nearly constant high invasion risk in small islands (e.g. O’ahu). However, we still identified gradients in invasion risks within islands smaller than 100 km width (e.g. Hawai’i and Reunion Island), which suggests the possibility to prioritise specific areas in small islands. Both P. grandis and P. laticauda are commonly found on anthropogenic structures including hotels and plant nurseries (pers. obs., Ineich, Choeur, Crottini; Gehring et al. 2010), as well as ornamental plants and plantation crops such as bananas and coconuts (Gill et al. 2001; D’Cruze et al. 2009; Porcel et al. 2021). Hence, individuals may be regularly carried via containers and accidentally introduced into shipments (Fritts 1987; Dubos et al. 2014; Khoury et al. 2021). Introductions were also caused by intentional or accidental release from captivity in regions where they are imported for the pet trade (e.g., in Florida; Andreone et al. 2012; Fieldsend and Krysko 2019). We did not integrate the pet trade per se to our analysis because the impact of the pet trade is mainly due to transportations (through accidental release from containers in ports and airports, as it has been the case in Toamasina, Madagascar; Dubos et al. 2014). Therefore, the effect of pet trade has been taken into account in our models with the proximity to ports and airports predictors. Moreover, introductions related to the pet trade after commercialisation are mainly intentional, which has been observed only in Florida. Hence, adding pet trade data would probably have induced a bias in our results. Both species were able to establish in areas with a low variability in temperature, both at the daily and annual scale. Their native range is located at the north of Madagascar, close to the shores, where the climate is mainly equatorial (Peel et al. 2007), with little annual and daily thermal variation. Their affinity with low thermal variability may be related to the strong effects of temperature fluctuation on activity and reproduction (Georges 2013; Noble et al. 2018, Choeur et al. 2022). Our study species are active throughout the year, which may explain their affinity with low temperature seasonality. Their year-round activity implies a need for continuous food availability. A low seasonality may serve to maintain fruit/nectar production and insect activity, all sources of food for both P. grandis and P. laticauda (Dervin et al. 2013; Dubos et al. 2020; Hoarau et al. 2021). The link with low variability at the daily and annual scale may be due to temperature-dependant sex determination, a common feature in reptiles including Phelsuma spp. (Gamble 2010; Cornejo-Páramo et al. 2020). Both, P. grandis and P. laticauda lay their eggs on the surface of the substrate, exposing them to daily fluctuation in temperature. In our case, a relatively constant temperature during the day and throughout the year may help balancing the sex-ratio and maintain population dynamics (Georges 2013).
We found that our study species were not able to establish in regions with low minimal temperature (< 10 °C), presumably because the cold reduces the activity of ectotherms and hence, their survivability. This corresponds to the lower bound of thermal tolerance commonly found in tropical reptiles (Sunday et al. 2011). Minimal temperature may also influence incubation duration and sex determination (Georges 2013; Roesch et al. 2021). An extended incubation period may increase the probability of hatching failure and egg predation. Lower nesting success and unbalanced sex ratio could disrupt population dynamics and prevent persistence in colder regions. The establishment of both species in Florida may be surprising given the low temperatures occasionally occurring during winter compared to northern Madagascar. Recent assessments of the climatic niche of P. grandis revealed an important dissimilarity between the climate of its native range and the invaded areas of Florida (Fieldsend et al. 2021a). This suggests a high potential for either thermal plasticity or adaptation to new environments (Card et al. 2018; Lapwong et al. 2021) or underlies that the species’ native distribution is strongly limited by biotic interactions (predation and competition; e.g., competition with P. kochi; Fieldsend et al. 2021a). This is consistent with findings on Hemidactylus frenatus and Anolis sagrei which were able to spread in areas colder than their native range (Angetter et al. 2011; Lapwong et al. 2021). Invasive success is often facilitated by high genetic diversity (Angetter et al. 2011), which may be enhanced by multiple native-range sources as it is the case for P. grandis in Florida (Fieldsend et al. 2021c). Further research may assess the level of genetic diversity of both species throughout their invaded range to better understand the species’ ability to persist in new environments.
Both gecko species did not establish in regions with arid seasons, presumably because low precipitation limits primary and secondary production and therefore food availability (Dubos et al. 2019). Prolonged drought periods are associated with body condition declines, increased mortality, and local extirpation in reptiles (Maxwell et al. 2019), conditions which may prevent the establishment of our study species.
Current invasion risks
Areas predicted to be at high risk of invasion were consistent between CHELSA- and Worldclim-based projections, but with locally important differences. These were mostly located in islands of the Caribbean, the islands of the Western Indian Ocean, South-East Asia, and Eastern Oceania. The potential establishment of invasive alien Phelsuma species in these areas may expose the local fauna to new competitors or predators. Both P. grandis and P. laticauda are highly flexible in terms of habitat use (D’Cruze and Kumar 2011; Dubos et al. 2014), which raises concerns for native synanthropic species as well as for species dwelling in natural forested habitats. Species at risk include native Phelsuma species (as suggested by the reduction of the P. lineata population in the eastern seaport town of Toamasina), or any other diurnal arboreal reptiles with similar habitat use (e.g., perch height, substrate; Augros et al. 2018; Wright et al. 2021), such as the Critically Endangered brown red-bellied anole Anolis koopmani from Haiti, the Endangered black-throated stout anole Anolis armouri from Haiti and the Dominican Republic, or the Critically Endangered Finca Ceres anole Anolis juangundlachi from Cuba. Given the broad range of habitat types occupied by our study species, conservation concern should also be given to all smaller species for which distribution matches the areas at risk (e.g., Bavaya spp. or Eurodactylodes spp. from New Caledonia). The Critically Endangered 'Eua Forest Gecko Lepidodactylus euaensis from Tonga is of particular concern, given its conservation status and the very high invasion risk identified for this island. Both P. grandis and P. laticauda are diurnal, but can also be active at night due to artificial light (Dubos et al. 2020; Baxter-Gilbert et al. 2021), highlighting the risk of competition with nocturnal species living near anthropogenic structures such as the Critically Endangered Barbados leaf-toed gecko Phyllodactylus pulcher (Williams et al. 2016). The potential impact of invasive Phelsuma species on native fauna may be mitigated by potential plasticity, which could promote microclimatic and/or habitat partitioning (Noble et al. 2011; Porcel et al. 2021; Ryan and Gunderson 2021). Future studies should investigate the potential for spatial, temporal, or environmental shift for P. grandis, P. laticauda, and their sympatric species to better understand which species are at greater risk.
The choice of climate data source
We identified local differences between predicted invasion risks using different climate data sources. Differences may be driven by the selection of different variables (e.g., models calibrated with CHELSA data selected ‘Daily temperature range’ but not with Worldclim for P. grandis); however, a recent study showed that differences can persist even when the same predictors are selected (Dubos et al. 2022a; see also Jiménez-Valverde et al. 2021). The mismatch may be better explained by the methods used to compute the climatologies. Worldclim is built from interpolated data with elevation and distance to the coast as predictors in addition to satellite data (Fick and Hijmans 2017). CHELSA used statistical downscaling for temperature, and precipitation estimations incorporate orographic factors (i.e., wind fields, valley exposition, boundary layer height; Karger et al. 2017). Such differences may be exacerbated in areas with strong topographic heterogeneity such as Oceanic Islands (e.g., Lannuzel et al. 2021). The difference in temporal coverage may represent another source of mismatch, with Worldclim representing the conditions of the 1960–1990 period while CHELSA was computed for 1979–2013. Since we have no a priori knowledge of which climate data source is most useful for predicting invasion risks, we suggest that studies aiming to predict current and future invasion risks should consider multiple climate data sources and quantify the uncertainty related to these.
Future invasion risks
Overall (i.e. when considering SRC), we predict that future climate change will reduce invasion risk for P. grandis according to both Worldclim and CHELSA, as commonly found for invasive reptiles (Bellard et al. 2013; but see Piquet et al. 2021). Note that in absence of biosecurity measures, a high probability of invasion might persist despite climate effects. On the other hand, invasion risk is predicted to increase for P. laticauda according to Worldclim but not according to CHELSA. For both species, Worldclim-based projections tended to predict higher risks than CHELSA-based projections. The spatial mismatch (overlap) was also greater with Worldclim. The differences between future projections based on CHELSA and Worldclim were of similar, or greater extent to that between the two extreme scenarios (SSP126 and SSP585; Fig. 4). This suggests that the inclusion of multiple climate datasets is of similar importance to that of emission scenarios.
Reptiles may shift their phenology in response to environmental change (Kearney et al. 2009), and this has already been observed in Phelsuma spp. (Dubos et al. 2020; Baxter-Gilbert et al. 2021). Behavioural response to climate change—and therefore phenological shifts—may interact with geographic response (Kearney et al. 2010). Further research is needed to fully understand the response of invasive reptiles to climate change and improve proactive actions.
On the use of 5 arc minutes resolution
Oceanic islands are characterised by highly heterogeneous topography and large gradients in climatic conditions within small areas. At the global scale, high resolutions (e.g. 30 arc seconds) are extremely demanding in terms of computing power and data storage, which is the reason of our choice of 5 arc minutes resolution. Our projections do not enable us to represent well this heterogeneity and we cannot identify suitable areas at fine scale. This may have led to an overestimation of the width of climatic niches of our study species. However, our projections show a variability between small tropical islands (e.g., Comoros, Mayotte and the small islands of the Bahamas), which supports that we identified the areas that best correspond to the species climatic niches. Projections also show a variability within small islands that are larger than one pixel (> 10 km; e.g., Reunion and the Island of Hawai’i; Fig. S13, S14, S17, S18), suggesting that high altitude colder climates were successfully ruled out in most cases. Our aim was to identify the regions and islands with high risk of invasion in order to enhance surveillance efforts at entry points rather than projecting the local areas likely to be occupied, and we believe our results are relevant with regard to prioritisation at the global scale.
Modelling invasion risks despite non-equilibrium
Ecological niche models of invasive species that are still expanding their range are wrong because they violate the equilibrium assumption (Hui 2022). Yet, they can be useful if calibrated adequately, because they can provide indications of areas that are suitable for invasive species on the basis of the existing knowledge of their distribution. For SDM predictions to be useful indicators of risks of invasion, the protocol must account for the lack of equilibrium and for other biases. There are two possible ways to cope with this issue. A first approach consists in excluding non-native occurrences (Barbet-Massin et al. 2018). This has already been tested for P. grandis, and projections based on models calibrated without native occurrence points omitted some occupied regions and suitable climate conditions (Fieldsend et al. 2021a). A second approach consists in addressing the processes resulting in the lack of equilibrium in the modelling protocol (Hui 2022). We adopted this second approach with two methodological aspects. We added variables with clear hypotheses related to the risks of introduction and spread (e.g. Lanner et al. 2022). By adding such variables (here we used distance to ports and airports), the model is less likely to look for the explanation to non-native limits of the species range in climatic variables. Similarly, sampling biases may result in a similar effect to non-equilibrium violations: if biases are not accounted for, then models will look for an explanation in climatic variables, which will result in misleading conclusions. We used here a sample bias correction technique which concentrated the generation of pseudo-absences points around presence points. This approach reduces the likelihood of downplaying suitable environments in unreached areas.
Concluding remarks
The source of climate data was not accounted for in SDM studies until recently (Baker et al. 2016; Morales-Barbero and Vega-Álvarez 2019; Datta et al. 2020; Ocon 2020; Dubos et al. 2022b, a; Stewart et al. 2022). To the best of our knowledge, this study is the first to account for multiple sources of climate data in invasion risk assessments. We highlighted spatial differences in the quantification of environmental suitability, potentially leading to the omission of at-risk regions. Further studies should assess the sensitivity of invasion risks to climate data at broader taxonomic scales, and across different landscapes (especially smaller oceanic islands vs. continents).
The economic cost of IAS is low when detected early, but rises rapidly if not detected because of the damage caused and increased management efforts (Renault et al. 2021). Reptiles represent the second worst invasive vertebrate class in terms of annual economic cost worldwide (Diagne et al. 2021). Therefore, it seems largely economically viable to promote efficient biosecurity measures in order to ensure early detections (Cuthbert et al. 2022; Dubos et al. 2023) and develop public awareness to reduce intentional release (Perry and Farmer 2011). Given the ecological and economic stakes, surveillance programmes should be considered in areas identified as at high risk of invasion based on single climate data. However, surveillance efforts should be prioritised where high invasion risks are identified with high certainty, i.e., based on predictions accounting for multiple climate data sources.
Data availability
All biological data formatted and analysed during this study are included in this published article in the supporting online material as RDS objects.
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We thank Gregory Deso for useful exchanges and comments on the manuscript.
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Open access funding provided by FCT|FCCN (b-on). The authors have not disclosed any funding. Portuguese National Funds through FCT (Fundação para a Ciência e a Tecnologia) support the research contract to Angelica Crottini [2020.00823.CEECIND/CP1601/CT0003] and Nicolas Dubos [ICETA_2021_26].
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Dubos, N., Fieldsend, T.W., Roesch, M.A. et al. Choice of climate data influences predictions for current and future global invasion risks for two Phelsuma geckos. Biol Invasions 25, 2929–2948 (2023). https://doi.org/10.1007/s10530-023-03082-8
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DOI: https://doi.org/10.1007/s10530-023-03082-8