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A simple, rapid and effective method for total RNA extraction from Lentinula edodes

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Abstract

A rapid, inexpensive and reliable method for total RNA extraction from fruiting bodies of Lentinula edodes containing large quantities of polysaccharides and secondary metabolites is described. An initial extraction step using saturated NaCl solution facilitates the separation of nucleic acids from contaminants and, after further extraction with organic solvents and precipitation with 2-propanol, total RNA of high purity and suitable for applications such as cDNA synthesis, RT-PCR and Northern blot hybridization was obtained. The procedure may also have wider applicability for total RNA extraction from the tissues of other mushrooms.

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References

  • Badr A, Bak W-C (2005) What is shiitake? Mushroom Growersȁ9 Handbook: Shiitake Cultivation 2:3–16

  • Barbaric D, Dalla-Pozza L, Byrne JA (2002) A reliable method for total RNA extraction from frozen human bone marrow samples taken at diagonosis of acute leukaemia. J Clin Path 55:865–867

    Article  PubMed  CAS  Google Scholar 

  • Chang ST (1999) World production of cultivated edible and medicinal mushrooms in 1997 with emphasis on Lentinus edodes (Berk.) Sing., in China. Intl J Med Mush 1:291–300

    Google Scholar 

  • Cheong XC, Swee ST, Chai LH, Rofina YO, Siew MP (2004) Optimisation of RNA extraction from Gracilaria changii (Gracilariales, Rhodophyta). J Appl Phycol 16:297–301

    Article  Google Scholar 

  • Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156–159

    Article  PubMed  CAS  Google Scholar 

  • Fang G, Hammar S, Grumet R (1992) A quick and inexpensive method for removing polysaccharides from plant genomic DNA. Biotechniques 13:52–56

    PubMed  CAS  Google Scholar 

  • Ho CL, Phang SM, Sinnappah ND, Pang T (1996) Molecular approaches in the taxonomy of the red and brown seaweeds. In: Chaudhary BR, Agrawal SB (eds) Cytology, genetics and molecular biology of algae. SPB Academic Publishing, Amsterdam pp 351–362

    Google Scholar 

  • Kües U, Liu Y (2000) Fruiting body production in basidiomycetes. Appl Microbiol Biotechnol 54:141–152

    Article  PubMed  Google Scholar 

  • Miyazaki Y, Nakamura M, Babasaki K (2005) Molecular cloning of developmentally specific genes by representational difference analysis during the fruiting body formation in the basidiomycete Lentinula edodes. Fungal Genet Biol 42:493–505

    Article  PubMed  CAS  Google Scholar 

  • Osamu K, Akihiko M, Susumu K, Junichi T, Yuji S, Kazuo S (1995) A fruiting body-specific cDNA, mfbAc, from the mushroom Lentinus edodes encodes a high-molecular-weight cell-adhesion protein containing an Arg-Gly-Asp motif. Gene 154:31–37

    Article  Google Scholar 

  • Qu ZL, Zou SQ, Cui NQ, Wu XZ, Qin MF, Kong D, Zhou ZL (2005) Upregulation of human telomerase reverse transcriptase mRNA expression by in vitro transfection of hepatitis B virus X gene into human hepatocarcinoma and cholangiocarcinoma cells. World J Gastroenterol 11:5627–5632

    PubMed  CAS  Google Scholar 

  • Sakamoto Y, Irie T, Sato T (2005) Isolation and characterization of a fruiting body-specific exo-beta-1, 3-glucanase-encoding gene, exg1, from Lentinula edodes. Curr Genet 47:244–252

    Article  PubMed  CAS  Google Scholar 

  • Sambrook JE, Fritsch EF, Maniatis T (2002) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Scheibner H, Frey HR, Eicken K, Meyer H, Greiser-Wilke I (2000) Detection of the genome of bovine viral diarrhea virus (BVDV) using the polymerase chain reaction after reverse transcription (RT-PCR): comparison of methods for the isolation of ribonucleic acid (RNA) from clinical samples. Dtsch Tierarztl Wochenschr 107:431–437

    PubMed  CAS  Google Scholar 

  • Stryer L (1997) Biochemistry, 4th edn. W. H. Freeman, New York

    Google Scholar 

  • Zhao J, Chen YH, Kwan HS (2000) Molecular cloning, characterization, and differential expression of a glucoamylase gene from the basidiomycetous fungus Lentinula edodes. Appl Environ Microbiol 66:2531–2535

    Article  PubMed  CAS  Google Scholar 

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Acknowledgement

We thank Dr. John Buswell for linguistic revision of the manuscript.

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Correspondence to Zhi-yong Feng.

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Li, Jh., Tang, Ch., Song, Cy. et al. A simple, rapid and effective method for total RNA extraction from Lentinula edodes . Biotechnol Lett 28, 1193–1197 (2006). https://doi.org/10.1007/s10529-006-9074-y

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  • DOI: https://doi.org/10.1007/s10529-006-9074-y

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