Abstract
A balanced response to intrinsic and extrinsic apoptotic signals is crucial to support homeostatic development and animal survival. Regulation of activation and inhibition of apoptotic pathways involves diverse mechanisms including protein ubiquitylation to control expression levels of apoptotic factors. Here we report that drosophila Ring and YY1 Binding Protein (dRYBP) protein interacts both genetically and biochemically with the E3 ubiquitin ligase SKPA, dCULLIN, F-box (SCF) complex to synergistically inhibit apoptosis in Drosophila. Further, we show that the loss of skpA function activates the intrinsic pathway of apoptosis and down-regulates the levels of expression of the anti-apoptotic DIAP1 protein. Accordingly, the apoptosis induced by inactivation of skpA and dRYBP is rescued by loss of function of the pro-apoptotic gene reaper and overexpression of DIAP1. Of interest, we also find that high levels of SKPA protein rescue the wing phenotype induced by overexpression of Reaper protein. Finally, we demonstrate that overexpression of SKPA inhibits both developmental and radiation-induced apoptosis. We propose that the function of the dRYBP–SCF complex in the inhibition of apoptosis might possibly be to control the levels of the pro-apoptotic and anti-apoptotic proteins most likely by promoting their ubiquitylation and consequently, proteasomal degradation. Given the evolutionary conservation of the dRYBP and the SCF proteins, our results suggest that their mammalian homologs may function in balancing cell survival versus cell death during normal and pathological development.
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References
Conradt B (2009) Genetic control of programmed cell death during animal development. Annu Rev Genet 43:493–523
Favaloro B, Allocati N, Graziano V, Di Ilio C, De Laurenzi V (2012) Role of apoptosis in disease. Aging 4(5):330–349
Fuchs Y, Steller H (2011) Programmed cell death in animal development and disease. Cell 147(4):742–758
Steller H (1995) Mechanisms and genes of cellular suicide. Science 267(5203):1445–1449
MacKenzie SH, Clark AC (2012) Death by caspase dimerization. Adv Exp Med Biol 747:55–73
Wing JP, Schwartz LM, Nambu JR (2001) The RHG motifs of Drosophila Reaper and Grim are important for their distinct cell death-inducing abilities. Mech Dev 102(1–2):193–203
Hay BA, Wassarman DA, Rubin GM (1995) Drosophila homologs of baculovirus inhibitor of apoptosis proteins function to block cell death. Cell 83(7):1253–1262
Bergmann A (2010) The role of ubiquitylation for the control of cell death in Drosophila. Cell Death Differ 17(1):61–67
Ciechanover A, Heller H, Elias S, Haas AL, Hershko A (1980) ATP-dependent conjugation of reticulocyte proteins with the polypeptide required for protein degradation. Proc Natl Acad Sci USA 77(3):1365–1368
Hershko A, Ciechanover A, Rose IA (1979) Resolution of the ATP-dependent proteolytic system from reticulocytes: a component that interacts with ATP. Proc Natl Acad Sci USA 76(7):3107–3110
Olson MR, Holley CL, Yoo SJ, Huh JR, Hay BA, Kornbluth S (2003) Reaper is regulated by IAP-mediated ubiquitination. J Biol Chem 278(6):4028–4034
Holley CL, Olson MR, Colon-Ramos DA, Kornbluth S (2002) Reaper eliminates IAP proteins through stimulated IAP degradation and generalized translational inhibition. Nat Cell Biol 4(6):439–444
Ryoo HD, Bergmann A, Gonen H, Ciechanover A, Steller H (2002) Regulation of Drosophila IAP1 degradation and apoptosis by reaper and ubcD1. Nat Cell Biol 4(6):432–438
Yoo SJ, Huh JR, Muro I, Yu H, Wang L, Wang SL, Feldman RM, Clem RJ, Muller HA, Hay BA (2002) Hid, Rpr and Grim negatively regulate DIAP1 levels through distinct mechanisms. Nat Cell Biol 4(6):416–424
Cardozo T, Pagano M (2004) The SCF ubiquitin ligase: insights into a molecular machine. Nat Rev Mol Cell Biol 5(9):739–751
Jackson PK, Eldridge AG (2002) The SCF ubiquitin ligase: an extended look. Mol Cell 9(5):923–925
Skowyra D, Craig KL, Tyers M, Elledge SJ, Harper JW (1997) F-box proteins are receptors that recruit phosphorylated substrates to the SCF ubiquitin–ligase complex. Cell 91(2):209–219
Feldman RM, Correll CC, Kaplan KB, Deshaies RJ (1997) A complex of Cdc4p, Skp1p, and Cdc53p/cullin catalyzes ubiquitination of the phosphorylated CDK inhibitor Sic1p. Cell 91(2):221–230
Sundqvist A, Bengoechea-Alonso MT, Ye X, Lukiyanchuk V, Jin J, Harper JW, Ericsson J (2005) Control of lipid metabolism by phosphorylation-dependent degradation of the SREBP family of transcription factors by SCF(Fbw7). Cell Metab 1(6):379–391
Inuzuka H, Shaik S, Onoyama I, Gao D, Tseng A, Maser RS, Zhai B, Wan L, Gutierrez A, Lau AW, Xiao Y, Christie AL, Aster J, Settleman J, Gygi SP, Kung AL, Look T, Nakayama KI, DePinho RA, Wei W (2011) SCF(FBW7) regulates cellular apoptosis by targeting MCL1 for ubiquitylation and destruction. Nature 471(7336):104–109
Marikawa Y, Elinson RP (1999) Relationship of vegetal cortical dorsal factors in the Xenopus egg with the Wnt/beta-catenin signaling pathway. Mech Dev 89(1–2):93–102
Silverman JS, Skaar JR, Pagano M (2012) SCF ubiquitin ligases in the maintenance of genome stability. Trends Biochem Sci 37(2):66–73
Alam SL, Sun J, Payne M, Welch BD, Blake BK, Davis DR, Meyer HH, Emr SD, Sundquist WI (2004) Ubiquitin interactions of NZF zinc fingers. EMBO J 23(7):1411–1421
Gonzalez I, Aparicio R, Busturia A (2008) Functional characterization of the dRYBP gene in Drosophila. Genetics 179(3):1373–1388
Arrigoni R, Alam SL, Wamstad JA, Bardwell VJ, Sundquist WI, Schreiber-Agus N (2006) The Polycomb-associated protein Rybp is a ubiquitin binding protein. FEBS Lett 580(26):6233–6241
Gonzalez I, Busturia A (2009) High levels of dRYBP induce apoptosis in Drosophila imaginal cells through the activation of reaper and the requirement of trithorax, dredd and dFADD. Cell Res 19(6):747–757
Novak RL, Phillips AC (2008) Adenoviral-mediated Rybp expression promotes tumor cell-specific apoptosis. Cancer Gene Ther 15(11):713–722
Danen-van Oorschot AA, Voskamp P, Seelen MC, van Miltenburg MH, Bolk MW, Tait SW, Boesen-de Cock JG, Rohn JL, Borst J, Noteborn MH (2004) Human death effector domain-associated factor interacts with the viral apoptosis agonist Apoptin and exerts tumor-preferential cell killing. Cell Death Differ 11(5):564–573
Stanton SE, Blanck JK, Locker J, Schreiber-Agus N (2007) Rybp interacts with Hippi and enhances Hippi-mediated apoptosis. Apoptosis 12(12):2197–2206
Zheng L, Schickling O, Peter ME, Lenardo MJ (2001) The death effector domain-associated factor plays distinct regulatory roles in the nucleus and cytoplasm. J Biol Chem 276(34):31945–31952
Bocca SN, Muzzopappa M, Silberstein S, Wappner P (2001) Occurrence of a putative SCF ubiquitin ligase complex in Drosophila. Biochem Biophys Res Commun 286(2):357–364
Brand AH, Manoukian AS, Perrimon N (1994) Ectopic expression in Drosophila. Methods Cell Biol 44:635–654
Brand AH, Perrimon N (1993) Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118(2):401–415
Estella C, McKay DJ, Mann RS (2008) Molecular integration of wingless, decapentaplegic, and autoregulatory inputs into Distalless during Drosophila leg development. Dev Cell 14(1):86–96
Dietzl G, Chen D, Schnorrer F, Su KC, Barinova Y, Fellner M, Gasser B, Kinsey K, Oppel S, Scheiblauer S, Couto A, Marra V, Keleman K, Dickson BJ (2007) A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448(7150):151–156
Sandu C, Ryoo HD, Steller H (2010) Drosophila IAP antagonists form multimeric complexes to promote cell death. J Cell Biol 190(6):1039–1052
Heriche JK, Ang D, Bier E, O’Farrell PH (2003) Involvement of an SCFSlmb complex in timely elimination of E2F upon initiation of DNA replication in Drosophila. BMC Genet 4:9
Hays R, Wickline L, Cagan R (2002) Morgue mediates apoptosis in the Drosophila melanogaster retina by promoting degradation of DIAP1. Nat Cell Biol 4(6):425–431
Jiang C, Lamblin AF, Steller H, Thummel CS (2000) A steroid-triggered transcriptional hierarchy controls salivary gland cell death during Drosophila metamorphosis. Mol Cell 5(3):445–455
Hughes JR, Meireles AM, Fisher KH, Garcia A, Antrobus PR, Wainman A, Zitzmann N, Deane C, Ohkura H, Wakefield JG (2008) A microtubule interactome: complexes with roles in cell cycle and mitosis. PLoS Biol 6(4):e98
Bejarano F, Gonzalez I, Vidal M, Busturia A (2005) The Drosophila RYBP gene functions as a Polycomb-dependent transcriptional repressor. Mech Dev 122(10):1118–1129
Aparicio R, Neyen C, Lemaitre B, Busturia A (2013) dRYBP contributes to the negative regulation of the Drosophila Imd pathway. PLoS ONE 8(4):e62052
Jiang J, Struhl G (1998) Regulation of the Hedgehog and Wingless signalling pathways by the F-box/WD40-repeat protein Slimb. Nature 391(6666):493–496
Spradling AC, Stern D, Beaton A, Rhem EJ, Laverty T, Mozden N, Misra S, Rubin GM (1999) The Berkeley Drosophila Genome Project gene disruption project: single P-element insertions mutating 25% of vital Drosophila genes. Genetics 153(1):135–177
Murphy TD (2003) Drosophila skpA, a component of SCF ubiquitin ligases, regulates centrosome duplication independently of cyclin E accumulation. J Cell Sci 116(Pt 11):2321–2332
Hay BA, Wolff T, Rubin GM (1994) Expression of baculovirus P35 prevents cell death in Drosophila. Development 120(8):2121–2129
Miletich I, Limbourg-Bouchon B (2000) Drosophila null slimb clones transiently deregulate Hedgehog-independent transcription of wingless in all limb discs, and induce decapentaplegic transcription linked to imaginal disc regeneration. Mech Dev 93(1–2):15–26
Dichtel-Danjoy ML, Ma D, Dourlen P, Chatelain G, Napoletano F, Robin M, Corbet M, Levet C, Hafsi H, Hainaut P, Ryoo HD, Bourdon JC, Mollereau B (2013) Drosophila p53 isoforms differentially regulate apoptosis and apoptosis-induced proliferation. Cell Death Differ 20(1):108–116
Nordstrom W, Chen P, Steller H, Abrams JM (1996) Activation of the reaper gene during ectopic cell killing in Drosophila. Dev Biol 180(1):213–226
Manjon C, Sanchez-Herrero E, Suzanne M (2007) Sharp boundaries of Dpp signalling trigger local cell death required for Drosophila leg morphogenesis. Nat Cell Biol 9(1):57–63
Wichmann A, Jaklevic B, Su TT (2006) Ionizing radiation induces caspase-dependent but Chk2- and p53-independent cell death in Drosophila melanogaster. Proc Natl Acad Sci USA 103(26):9952–9957
Kelly GL, Strasser A (2011) The essential role of evasion from cell death in cancer. Adv Cancer Res 111:39–96
Thompson SJ, Loftus LT, Ashley MD, Meller R (2008) Ubiquitin-proteasome system as a modulator of cell fate. Curr Opin Pharmacol 8(1):90–95
Bader M, Arama E, Steller H (2010) A novel F-box protein is required for caspase activation during cellular remodeling in Drosophila. Development 137(10):1679–1688
Tan M, Gallegos JR, Gu Q, Huang Y, Li J, Jin Y, Lu H, Sun Y (2006) SAG/ROC-SCF beta-TrCP E3 ubiquitin ligase promotes pro-caspase-3 degradation as a mechanism of apoptosis protection. Neoplasia 8(12):1042–1054
Pirity MK, Locker J, Schreiber-Agus N (2005) Rybp/DEDAF is required for early postimplantation and for central nervous system development. Mol Cell Biol 25(16):7193–7202
Stanton SE, McReynolds LJ, Evans T, Schreiber-Agus N (2006) Yaf2 inhibits caspase 8-mediated apoptosis and regulates cell survival during zebrafish embryogenesis. J Biol Chem 281(39):28782–28793
Chen D, Zhang J, Li M, Rayburn ER, Wang H, Zhang R (2009) RYBP stabilizes p53 by modulating MDM2. EMBO Rep 10(2):166–172
Joswig A, Gabriel HD, Kibschull M, Winterhager E (2003) Apoptosis in uterine epithelium and decidua in response to implantation: evidence for two different pathways. Reprod Biol Endocrinol 1:44
Acknowledgments
We thank our colleges Carolina Simoes da Silva and Ricardo Aparicio for fruitful discussions and Keith Harshman for carefully reading the manuscript. We are indebted to Peter C. Verrijzer and members of his laboratory for sharing the mass spectrometry data. We thank the Consolider transgenic Drosophila facility for transgenic flies; the Bloomington Stock Center, the TRiP at Harvard Medical School (NIH/NIGMS R01-GM084947) and the Vienna Drosophila RNAi Center for providing stocks; James Wakefield for the anti-SKPA antibody; Herman Steller for the anti-DIAP1 antibody and the UAS-rpr-HA transgenic flies; Peter C. Verrijzer for embryonic nuclear extracts and Pat H. O’Farrell for the UAS-skpA construct. This work was supported by grants from the Dirección General de Investigación (BFU2008-01154) to A.B, the Consolider Ingenio 2010 Program of the Ministerio de Ciencia e Innovación (CSD 2007-00008) to A.B., by an institutional grant to the Centro de Biología Molecular Severo Ochoa from the Fundación Ramón Areces.
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Fereres, S., Simón, R. & Busturia, A. A novel dRYBP–SCF complex functions to inhibit apoptosis in Drosophila . Apoptosis 18, 1500–1512 (2013). https://doi.org/10.1007/s10495-013-0897-4
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DOI: https://doi.org/10.1007/s10495-013-0897-4