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Motiliproteus sediminis gen. nov., sp. nov., isolated from coastal sediment

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Abstract

A novel Gram-stain-negative, rod-to-spiral-shaped, oxidase- and catalase- positive and facultatively aerobic bacterium, designated HS6T, was isolated from marine sediment of Yellow Sea, China. It can reduce nitrate to nitrite and grow well in marine broth 2216 (MB, Hope Biol-Technology Co., Ltd) with an optimal temperature for growth of 30–33 °C (range 12–45 °C) and in the presence of 2–3 % (w/v) NaCl (range 0.5–7 %, w/v). The pH range for growth was pH 6.2–9.0, with an optimum at 6.5–7.0. Phylogenetic analysis based on 16S rRNA gene sequences demonstrated that the novel isolate was 93.3 % similar to the type strain of Neptunomonas antarctica, 93.2 % to Neptunomonas japonicum and 93.1 % to Marinobacterium rhizophilum, the closest cultivated relatives. The polar lipid profile of the novel strain consisted of phosphatidylethanolamine, phosphatidylglycerol and some other unknown lipids. Major cellular fatty acids were summed feature 3 (C16:1 ω7c/iso-C15:0 2-OH), C18:1 ω7c and C16:0 and the main respiratory quinone was Q-8. The DNA G+C content of strain HS6T was 61.2 mol %. Based on the phylogenetic, physiological and biochemical characteristics, strain HS6T represents a novel genus and species and the name Motiliproteus sediminis gen. nov., sp. nov., is proposed. The type strain is HS6T (=ATCC BAA-2613T=CICC 10858T).

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References

  • Arahal DR, Lekunberri I, González JM, Pascual J, Pujalte MJ, Pedrós-Alió C, Pinhassi J (2007) Neptuniibacter caesariensis gen. nov., sp. nov., a novel marine genome-sequenced gammaproteobacterium. Int J Syst Evol Microbiol 57:1000–1006

    Article  CAS  PubMed  Google Scholar 

  • Baumann P, Bowditch RD, Baumann L, Beaman B (1983) Taxonomy of marine pseudomonas species: P. stanieri sp. nov,; P. perfectomarina sp. nov., nom. rev.; P. nautica; and P. doudoroffii. Int J Syst Bacteriol 33:857–865

    Article  Google Scholar 

  • Chang HW, Nam YD, Kwon HY, Park JR, Lee JS, Yoon JH, An KG, Bae JW (2007) Marinobacterium halophilum sp. nov., a marine bacterium isolated from the Yellow Sea. Int J Syst Evol Microbiol 57:77–80

    Article  CAS  PubMed  Google Scholar 

  • Chen MH, Sheu SY, Chiu TF, Chen WM (2012) Neptuniibacter halophilus sp. nov., isolated from a salt pan, and emended description of the genus Neptuniibacter. Int J Syst Evol Microbiol 62:1104–1109

    Article  CAS  PubMed  Google Scholar 

  • Chimetto LA, Cleenwerck I, Brocchi M, Willems A, VOS DP, Thompson FL (2011) Marinobacterium coralli sp. nov., isolated from mucus of coral (Mussismilia hispida). Int J Syst Evol Microbiol 61:60–64

    Article  CAS  PubMed  Google Scholar 

  • Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London

    Google Scholar 

  • Dimitriu PA, Shukla SK, Conradt J, Márquez MC, Ventosa A, Maglia A, Peyton BM, Pinkart HC, Mormile MR (2005) Nitrincola lacisaponensis gen. nov., sp. nov., a novel alkaliphilic bacterium isolated from an alkaline, saline lake. Int J Syst Evol Microbiol 55:2273–2278

    Article  CAS  PubMed  Google Scholar 

  • Garrity GM, Bell JA, Lilburn T (2005) Family I. Oceanospirillaceae fam nov. In: Garrity GM (ed) Bergey’s Manual of Systematic Bacteriology, 2nd edn. Springer, New York, pp 271–281

    Google Scholar 

  • González JM, Mayer F, Moran MA, Hodson RE, Whitman WB (1997) Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., two marine bacteria from a lignin-rich pulp mill waste enrichment community. Int J Syst Bacteriol 47:369–376

    Article  PubMed  Google Scholar 

  • Hall TA (1999) BioEdit: a user-friendly sequence alignment editor and analysis program for windows 95/98/NT. Nucl Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Hedlund BP, Geiselbrecht AD, Bair TJ, Staley JT (1999) Polycyclic Aromatic Hydrocarbon Degradation by a New Marine Bacterium, Neptunomonas naphthovorans gen. nov., sp. nov. Appl Environ Microbiol 65:251–259

    CAS  PubMed Central  PubMed  Google Scholar 

  • Huo YY, Xu XW, Cao Y, Wang CS, Zhu XF, Oren A, WU M (2009) Marinobacterium nitratireducens sp. nov. and marinobacterium sediminicola sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 59:1173–1178

    Article  CAS  PubMed  Google Scholar 

  • Hylemon PB, Wells JS Jr, Krieg NR, Jannasch HW (1973) The genus Spirillum: A taxonomic study. Int J Syst Bacteriol 23:340–380

    Article  CAS  Google Scholar 

  • Kim H, Choo YJ, Song J, Lee JS, Lee KC, Cho JC (2007) Marinobacterium litorale sp. nov. in the order Oceanospirillales. Int J Syst Evol Microbiol 57:1659–1662

    Article  CAS  PubMed  Google Scholar 

  • Kim YG, Jin YA, Hwang CY, Cho BC (2008) Marinobacterium rhizophilum sp. nov., isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica. Int J Syst Evol Microbiol 58:164–167

    Article  CAS  PubMed  Google Scholar 

  • Kim H, Oh HM, Yang SJ, Lee JS, Hong JS, Cho JC (2009a) Marinobacterium marisflavi sp. nov., isolated from a costal seawater. Curr Microbiol 58:511–515

    Article  CAS  PubMed  Google Scholar 

  • Kim SJ, Park SJ, Yoon DN, Park BJ, Choi BR, Lee DH, Roh Y, Rhee SK (2009b) Marinobacterium maritimum sp. nov., a marine bacterium isolated from Arctic sediment. Int J Syst Evol Microbiol 59:3030–3034

    Article  CAS  PubMed  Google Scholar 

  • Kim JM, Lee SH, Jung JY, Jeon CO (2010) Marinobacterium lutimaris sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 60:1828–1831

    Article  CAS  PubMed  Google Scholar 

  • Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721

    Article  CAS  PubMed  Google Scholar 

  • Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, pp 115–175

    Google Scholar 

  • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948

    Article  CAS  PubMed  Google Scholar 

  • Lee HW, Shin NR, Lee J, Roh SW, Whon TW, Bae JW (2012) Neptunomonas concharum sp. nov., isolated from a dead ark clam, and emended description of the genus Neptunomonas. Int J Syst Evol Microbiol 62:2657–2661

    Article  CAS  PubMed  Google Scholar 

  • Liu A, Zhang XY, Chen CX, Xie BB, Qin QL, Liu C, Li GW, Li H, Xu Z, Chen XL, Zhou BC, Zhang YZ (2013) Neptunomonas qingdaonensis sp. nov., isolated from intertidal sand. Int J Syst Evol Microbiol 63:1673–1677

    Article  CAS  PubMed  Google Scholar 

  • Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 38:159–167

    Article  Google Scholar 

  • Miyazaki M, Nogi Y, Fujiwara Y, Kawato M, Kubokawa K, Horikoshi K (2008) Neptunomonas japonica sp. nov., an Osedax japonicus symbiont-like bacterium isolated from sediment adjacent to sperm whale carcasses off Kagoshima, Japan. Int J Syst Evol Microbiol 58:866–871

    Article  PubMed  Google Scholar 

  • Murray RGE, Doetsch RN, Robinow F (1994) Determinative and cytological light microscopy. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 21–41

    Google Scholar 

  • Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI, Inc, Newark

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Tindall BJ (1990a) A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13:128–130

    Article  CAS  Google Scholar 

  • Tindall BJ (1990b) Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Letts 66:199–202

    Article  CAS  Google Scholar 

  • Tindall BJ, Sikorski J, Smibert RM, Kreig NR (2007) Phenotypic characterization and the principles of comparative systematics. In: Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM, Snyder LR (eds) Methods for general and molecular microbiology, 3rd edn. ASM press, Washington DC, pp 330–393

    Google Scholar 

  • Zhang XY, Zhang YJ, Yu Y, Li HJ, Gao ZM, Chen XL, Chen B, Zhang YZ (2010) Neptunomonas antarctica sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 60:1958–1961

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by the National Natural Science Foundation of China (31370057, 31290231, 31370108) and the China Ocean Mineral Resources R & D Association (COMRA) Special Foundation (DY125-15-T-05). Z. J. Wang acknowledges grant of Graduate Innovation Foundation of Shandong University at WeiHai, GIFSDUWH yjs12037.

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Correspondence to Zong-Jun Du.

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The GenBank accession number for the 16S rRNA gene sequence of Motiliproteus sediminis HS6T is KF953945.

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Wang, ZJ., Xie, ZH., Wang, C. et al. Motiliproteus sediminis gen. nov., sp. nov., isolated from coastal sediment. Antonie van Leeuwenhoek 106, 615–621 (2014). https://doi.org/10.1007/s10482-014-0232-2

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