Abstract
In total, 435 pure bacterial strains were isolated from microtherm oil-production water from the Karamay Oilfield, Xinjiang, China, by using four media: oil-production water medium (Cai medium), oil-production water supplemented with mineral salt medium (CW medium), oil-production water supplemented with yeast extract medium (CY medium), and blood agar medium (X medium). The bacterial isolates were affiliated with 61 phylogenetic groups that belong to 32 genera in the phyla Actinobacteria, Firmicutes, and Proteobacteria. Except for the Rhizobium, Dietzia, and Pseudomonas strains that were isolated using all the four media, using different media led to the isolation of bacteria with different functions. Similarly, nonheme diiron alkane monooxygenase genes (alkB/alkM) also clustered according to the isolation medium. Among the bacterial strains, more than 24 % of the isolates could use n-hexadecane as the sole carbon source for growth. For the first time, the alkane-degrading ability and alkB/alkM were detected in Rhizobium, Rhodobacter, Trichococcus, Micrococcus, Enterococcus, and Bavariicoccus strains, and the alkM gene was detected in Firmicutes strains.
References
Alonso-Gutiérrez J, Teramoto M, Yamazoe A, Harayama S, Figueras A, Novoa B (2011) Alkane-degrading properties of Dietzia sp. H0B, a key player in the Prestige oil spill biodegradation (NW Spain). J Appl Microbiol 111:800–810
Dahle H, Garshol F, Madsen M, Birkeland N-K (2008) Microbial community structure analysis of produced water from a high-temperature North Sea oil-field. Antonie Van Leeuwenhoek 93:37–49
Hunter W, Kuykendall L, Manter D (2007) Rhizobium selenireducens sp. nov.: a selenite-reducing α-Proteobacteria isolated from a bioreactor. Curr Microbiol 55:455–460
Kaster K, Bonaunet K, Berland H, Kjeilen-Eilertsen G, Brakstad O (2009) Characterisation of culture-independent and -dependent microbial communities in a high-temperature offshore chalk petroleum reservoir. Antonie Van Leeuwenhoek 96:423–439
Kloos K, Munch JC, Schloter M (2006) A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. J Microbiol Meth 66:486–496
Lazar I, Petrisor IG, Yen TF (2007) Microbial enhanced oil recovery (MEOR). Petrol Sci Technol 25:1353–1366
Li H, Yang S-Z, Mu B-Z, Rong Z-F, Zhang J (2006) Molecular analysis of the bacterial community in a continental high-temperature and water-flooded petroleum reservoir. FEMS Microbiol Lett 257:92–98
Miroshnichenko M, Hippe H, Stackebrandt E, Kostrikina N, Chernyh N, Jeanthon C, Nazina T, Belyaev S, Bonch-Osmolovskaya E (2001) Isolation and characterization of Thermococcus sibiricus sp. nov. from a Western Siberia high-temperature oil reservoir. Extremophiles 5:85–91
Nie Y, Fang H, Li Y, Chi C-Q, Tang YQ, Wu XL (2013a) The Genome of the moderate halophile Amycolicicoccus subflavus DQS3-9A1T reveals four alkane hydroxylation systems and provides some clues on the genetic basis for its adaptation to a petroleum environment. PLoS One 8(8):e70986
Nie Y, Liang J-L, Fang H, Tang Y-Q, Wu X-L (2013b) Characterization of a CYP153 alkane hydroxylase gene in a Gram-positive Dietzia sp. DQ12-45-1b and its “team role” with alkW1 in alkane degradation. Appl Microbiol Biotechnol. doi:10.1007/s00253-013-4821-1
Quan Z-X, Bae H-S, Baek J-H, Chen W-F, Im W-T, Lee S-T (2005) Rhizobium daejeonense sp. nov. isolated from a cyanide treatment bioreactor. Int J Syst Evol Microbiol 55:2543–2549
Ratajczak A, Geißdörfer W, Hillen W (1998) Alkane hydroxylase from Acinetobacter sp. strain ADP1 is encoded by alkM and belongs to a new family of bacterial integral-membrane hydrocarbon hydroxylases. Appl Environ Microbiol 64:1175–1179
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Shen F-T, Young L-S, Hsieh M-F, Lin S-Y, Young C–C (2010) Molecular detection and phylogenetic analysis of the alkane 1-monooxygenase gene from Gordonia spp. Syst Appl Microbiol 33:53–59
Sun J-Q, Xu L, Tang Y-Q, Chen F-M, Liu W-Q, Wu X-L (2011) Degradation of pyridine by one Rhodococcus strain in the presence of chromium (VI) or phenol. J Hazard Mater 191:62–68
Sun J-Q, Xu L, Tang Y-Q, Chen F-M, Wu X-L (2012) Simultaneous degradation of phenol and n-hexadecane by Acinetobacter strains. Bioresource Technol 123:664–668
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
Tang Y-Q, Li Y, Zhao J-Y, Chi C-Q, Huang L-X, Dong H-P, Wu X-L (2012) Microbial communities in long-term, water-flooded petroleum reservoirs with different in situ temperatures in the Huabei Oilfield, China. PLoS One 7:e33535
Tesar M, Reichenauer TG, Sessitsch A (2002) Bacterial rhizosphere populations of black poplar and herbal plants to be used for phytoremediation of diesel fuel. Soil Biol Biochem 34:1883–1892
van Beilen JB, Panke S, Lucchini S, Franchini AG, Röthlisberger M, Witholt B (2001) Analysis of Pseudomonas putida alkane-degradation gene clusters and flanking insertion sequences: evolution and regulation of the alk genes. Microbiology 147:1621–1630
Wang W, Shao Z (2011) Diversity of flavin-binding monooxygenase genes (almA) in marine bacteria capable of degradation long-chain alkanes. FEMS Microbiol Ecol 80:523–533
Wang YN, Cai H, Yu SL, Wang ZY, Liu J, Wu XL (2007) Halomonas gudaonensis sp. nov., isolated from a saline soil contaminated by crude oil. Int J Syst Evol Microbiol 57:911–915
Wang L, Wang W, Lai Q, Shao Z (2010) Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean. Environ Microbiol 12:1230–1242
Wang X-B, Chi C-Q, Nie Y, Tang Y-Q, Tan Y, Wu G, Wu X-L (2011) Degradation of petroleum hydrocarbons (C6–C40) and crude oil by a novel Dietzia strain. Bioresource Tech 102:7755–7761
Wen Y, Zhang J, Yan Q, Li S, Hong Q (2011) Rhizobium phenanthrenilyticum sp. nov., a novel phenanthrene-degrading bacterium isolated from a petroleum residue treatment system. J Gen Appl Microbiol 57:319–329
Xu Y, Fang X, Chen M, Zhang W, Li J, Lin M (2001) The detection of phenol degrading strain in environment with specific primer of phenol hydroxylase gene. Acta Microbiologica Sinica 41:298–303 (in Chinese)
Yoon J-H, Kang S-J, Yi H-S, Oh T-K, Ryu C-M (2010) Rhizobium soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 60:1387–1393
Yu S, Li S, Tang Y, Wu X (2011) Succession of bacterial community along with the removal of heavy crude oil pollutants by multiple biostimulation treatments in the Yellow River Delta, China. J Environ Sci 23:1533–1543
Zhang X, Li B, Wang H, Sui X, Ma X, Hong Q, Jiang R (2012) Rhizobium petrolearium sp. nov., isolated from oil-contaminated soil. Int J Syst Evol Microbiol 62:1871–1876
Zhao L, Ma T, Gao M, Gao P, Cao M, Zhu X, Li G (2012) Characterization of microbial diversity and community in water flooding oil reservoirs in China. World J Microb Biot 28:3039–3052
Acknowledgments
This research was supported by the National Natural Science Foundation of China (31200100, 31070107, and 31225001) and National High Technology Research and Development Program of China (2009AA063501 and 2013AA064401).
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Ji-Quan Sun and Lian Xu have contributed equally to this work.
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Sun, JQ., Xu, L., Zhang, Z. et al. Diverse bacteria isolated from microtherm oil-production water. Antonie van Leeuwenhoek 105, 401–411 (2014). https://doi.org/10.1007/s10482-013-0088-x
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DOI: https://doi.org/10.1007/s10482-013-0088-x