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Compatibility of organic solvents for electrochemical measurements in PDMS-based microfluidic devices


We have investigated the compatibility of some organic solvents commonly used in electrochemistry with microfluidic channels based on poly(dimethylsiloxane) (PDMS) and compared the stability of electrochemical measurements over several hours with how much PDMS swells when immersed in these solvents. Lee et al. (Anal Chem 75: 6544–6554. doi:10.1021/ac0346712, 2003) have shown that there is a good correlation between swelling of PDMS and the solubility parameter (δ H) of the various solvents and suggested that δ H can function as an indication of PDMS compatibility. We show that solvents with a very high swelling ratio can give stable voltammetry over several hours, and thus, we do not find that swelling is a good measure for compatibility with PDMS in electrochemical experiments.


Microfluidic devices can be fabricated from different materials like silicon (Reyes et al. 2002), glass, (Whitesides 2002) hydrogel, (Ghaemmaghami et al. 2012) paper, (Cate et al. 2015) or polymers (Ren et al. 2013). Each of them possesses their drawbacks and advantages. Historically, the first materials for microfluidic device fabrication were glass and silicon, and the chips were made by wet etching and then fusion bonding procedures. Because of the stiffness and chemical resistivity of these materials, processing usually requires the use of dangerous chemicals like hydrofluoric acid (in the wet etching step) and super clean environments together with high temperature and pressure conditions (in the fusion bonding step). These factors increase the overall cost of microfluidic chips fabrication and limit the broader use of these materials.

Over the last few years, devices made from paper where the liquid solutions are moved along the chip by capillary forces have become increasingly popular (Martinez et al. 2007). Since the channels are open to air and there is a cellulose matrix in the channel area, the number of analytical methods that can be integrated with these devices is also limited. So far, the most commonly used method is colorimetry, whose application to paper chips seems to be the main strategy for their commercial applications, mainly due to minimum requirements of the equipment needed for analysis (Martinez et al. 2008). Another drawback of the paper chips is that they cannot be integrated with small size valves which are used for precise control and manipulation of the flowing liquids.

For laboratory research—where one needs to compromise the ease of fabrication and the performance of the device—the most commonly used materials are elastomers, and among these, poly(dimethylsiloxane) (PDMS) is the most popular one (McDonald and Whitesides 2002). The main advantage of PDMS is the convenience in fabrication–it can be cast with high resolution in a relatively simple and fast photolithography process (Wu et al. 2003). Due to PDMS elasticity, it is possible to fabricate microvalves which can act like on-demand filters (Unger et al. 2000). Additionally, PDMS is gas permeable which makes it suitable for long-term cell culture in biological studies like cell screening (Kim et al. 2015), biochemical assays (El-Ali et al. 2006) and single cell analysis (Mu et al. 2013). On the other hand, permeability to gases can cause water evaporation during the flow and simultaneous crystallization of the dissolved analytes. This apparent disadvantage has been already used to perform controlled protein crystallization (Shim et al. 2007).

For integration of PDMS microfluidic channels with electrochemical experiments, PDMS structures are usually bound to a glass substrate containing the electrodes. In this way, the electrochemical microfluidics has been used to lower detection limits in electrochemical sensing devices (Pumera et al. 2006; Swensen et al. 2009), to improve the performance of biofuel cells (Kjeang et al. 2009) and in fundamental research like determination of electrocatalytic (Dumitrescu et al. 2012) or enzymatic reaction kinetics, (Han et al. 2009) investigation of molecular interactions (Strutwolf et al. 2010) or studying electrochemically modulated charge transfer processes at soft interfaces between two co-flowing liquid phases (MacDonald et al. 2007; Kaluza et al. 2013, 2014).

In most cases, however, electrochemical applications of PDMS microfluidic systems have been limited to the use of aqueous solutions or a few examples of aqueous-organic two-phase flows, with no reports on the use of organic solvents only. The use of organic solvents in microfluidics is an important issue that would expand the use of PDMS microfluidics over such fields as electrosynthesis, electroanalysis of oil samples or electrochemical extraction. It can also lead to an increase in the output of the two-phase chemical processes (like hydrogen peroxide generation) (Jedraszko et al. 2013) by transferring them from static to microfluidic conditions, as has been already shown for electrosynthesis of drug metabolites (Stalder and Roth 2013). In terms of application of electrochemical techniques in lab-on-a-chip detection units, equally important is the time scale of the analysis, i.e. how long one can perform reliable measurements in the non-aqueous sample without significant damage of the microfluidic device. So far, compatibility of PDMS with typical organic solvents has been addressed by Whitesides and co-workers (Lee et al. 2003), who studied physical effects like swelling of PDMS or its dissolution in more than 30 different solvents. In their studies, however, no effect of the organic solvents on the electrochemical measurements has been discussed.

The aim of this work was to examine how much a selection of organic solvents, commonly used in electrochemical measurements, affects PDMS physical properties and if there is any effect of so-called PDMS non-compatible solvents on the recorded electrochemical signals. Earlier, Whitesides and co-workers found that non-compatible organic solvents either swell or dissolve PDMS (Lee et al. 2003). To quantify the swelling effect, they introduced a swelling parameter which simply describes how much the linear dimension of PDMS change when it is immersed in a given solvent. In this work, we have performed electrochemical measurements in six organic solvents commonly used in electrochemical studies; 1,2-dichlorobenzene (DCB) (Kowski et al. 2009); 4-(3-phenylpropyl)pyridine (PPP) (Katif et al. 2008); N-octyl-2-pyrollidone (NOP) (MacDonald et al. 2007; Kaluza et al. 2013, 2014); α,α,α-trifluorotoluene (TFT) (Olaya et al. 2012); toluene (Duffy and Bond 2006; Adamiak et al. 2011); and acetonitrile (ACN) (MacDonald et al. 2008). For four of these solvents (DCB, PPP, NOP, TFT) that were not included in Whitesides’ study, we also determined the swelling parameter. In the case of TFT, we have used confocal fluorescence microscopy to visualise the real-time penetration of the solvent through PDMS walls. We believe that the conclusions from this work can expand the use of PDMS microfluidics in non-aqueous solvents in general, and the use of electrochemical instrumentation in these environments in particular.


Chemicals and materials

The poly(dimethylsiloxane) (PDMS) used for all experiments was Sylgard 184 elastomer and curing agent obtained from Dow Corning Company. We prepared the PDMS by mixing a 10:1 ratio (by weight) elastomer with curing agent which was degassed in a vacuum desiccator and cured at 70 °C for 24 h. The channels (500 µm × 90 µm × 19 mm, whl), with a single inlet and outlet, were prepared by soft lithography as previously described (Kaluza et al. 2013). The samples for the swelling study were cuboids of size approximately 1 × 1 × 0.5 cm. The electrochemical experiments were performed using ferrocene (99 %, Alfa-Aesar) as a redox probe and tetrabutylammonium-perchlorate (TBAP, 99 %, Fluka) as supporting electrolyte in the following solvents: N-octyl-2-pyrrolidone (NOP, Santa Cruz Biotechnology Inc.), acetonitrile (ACN, 99.8 %, Sigma-Aldrich), 1.2-dichlorobenzene (DCB, 99 %, Aldrich), 4-(3-phenylpropyl)-pyridine (PPP, 97 %, Aldrich), trifluorotoluene (TFT, 99 %, Acros Organics) and toluene (99.5 %, Aldrich). As fluorescence dye, we used rhodamine 101 inner salt purchased from Sigma-Aldrich which has relatively good solubility in a wide range of solvents.

Electrochemical measurements

The electrochemical measurements were performed using Autolab potentiostats (Metrohm Autolab) in a three-electrode set-up. All electrodes were sputtered Au microbands, on glass with a Ti adhesion layer, spanning the width of the microchannel patterned by standard photolithography. As working and pseudo-reference electrodes 100-µm-long gold bands were used, and the length of the counter electrode was 1000 µm. The gaps between the electrodes were 100 µm.

Cyclic voltammetry (CV) and square-wave voltammetry (SWV) of ferrocene were performed in each solvent with 1 h intervals for a total of 4 h. As a measure of the compatibility of the solvent with the PDMS channel for electrochemical measurement, we used the stability of the current and SWV peak potential over the course of the experiments. The flow rate through the microchannel was 40 µl min−1 during measurements and kept at 1 µl min−1 between the measurements, so as to not waste too much of the solvents and to provide fine time of solvent exposuring of PDMS channel. The flow was controlled using a Harvard Apparatus, Pump 11 elite syringe pump connected to the channel using polyethylene tubing.

Because we wanted to examine changes to the channels after the experiment series, the PDMS was not bonded to the glass supports, but instead held together by a PMMA support (Rozniecka et al. 2014).

To prevent the microchannel leakage, the whole PDMS block was hold by the pressure generated by the liquid flow introduced to microchannel in the withdraw mode. In the case of laser confocal imaging with TFT solvent, the PDMS was bonded to the glass plate by exposure to an O2 plasma for 50 s (Harrick, Model PDC-32G-2, 100 W) providing contact between PDMS edges and glass.

Swelling measurements

The swelling was measured by immersing squares of PDMS in the various solvents and photographing them after 1, 5 and 24 h using a Canon EOD 5D digital camera. The distance between the parallel edges of the samples was measured from the photographs using the free software ImageJ. For accurate quantitative analysis, we measured five different samples for each solvent. The swelling parameter, S, was defined as the ratio of the final to the initial lengths of the sides of the samples.

Fluorescence microscopy

We performed laser scanning confocal images using a NIKON A1-R system. The system is based on a motorised NIKON TiE 2000 inverted microscope. The measurements were taken using a dry objective with ×10 magnification (NA 0.3, working distance 16 mm). The liquid was stained with rhodamine 101 inner salt with a maximum of the absorption/emission at 560/589 nm. The wavelength of the excitation diode laser was 561 nm. We recorded the cross-section of the microfluidic channel using the 3D scanning mode of the confocal system. Separate focus planes were imaged at a frame rate of 1/15 fps. The distance between the focus planes was set to 9.645 μm. To increase the time resolution, we also imaged a single plane in the middle of the channel with a rate of 14.81 fps.

Results and discussion

The main goal of the present work was to investigate whether some solvents commonly thought of as incompatible with standard PDMS microchannels can be used for electrochemical studies on a relevant time scale. Since most electrochemical experiments are relatively fast, we used oxidation of ferrocene, a commonly used redox probe, as a model system and investigated how the electrochemical signal changes over the course of 4 h.

In Whitesides’ well-known study, the compatibility of organic solvents with PDMS was studied by looking at the swelling of a PDMS block after immersion in the solvent for 24 h (Lee et al. 2003). To be able to compare the results of our “electrochemical compatibility” with the swelling results published by the Whitesides group, we performed swelling experiments with the four liquids in our study not included in the original list of solvents. In Fig. 1, the bars show the swelling of PDMS in the various solvents after 1, 5 and 24 h. As we can see, significant swelling occurs only with TFT (close to 40 %) and to a smaller extent in DCB (about 10 %). In the inset of Fig. 1, the swelling ratio is plotted as a function of the Hildebrand solubility parameter, δ H, which is defined as the square root of the cohesive energy density of the solvent (see e.g. Barton 1991 for more information on δ H). This confirms the relationship established by Lee et al. (2003) that solvents with a solubility parameter close to that of PDMS (7.3 cal1/2 cm−3/2) induce more swelling than those with a very different δ H. The values of the solubility parameters for the solvents used in this study can be found in Table 1. For PPP and NOP, the values of the solubility parameter were estimated from similar compounds found in the literature. Most pyridines have δ H close to 10 cal1/2 cm−3/2 (Abboud and Notari 1999), so we assumed the same value for PPP. For NOP, we used the value of the similar compound N-methyl-2-pyrrolidone which is 11.1 cal1/2 cm−3/2 (Abboud and Notari 1999). Still, we find that compounds with similar δ H can have very different swelling ratio. One explanation from the Whitesides paper (Lee et al. 2003) could be the influence of polar contribution to δ H. However, in the case of DCB and PPP (both with δ H ≈ 10 cal1/2 cm−3/2), both molecules are quite polar.

Fig. 1
figure 1

Swelling ratio of PDMS blocks in various solvents measured after 1, 5 and 24 h. Error bars represent standard deviation from 10 measurement + experimental precision. Inset Swelling ratio as a function of the solubility parameter. For open squares, δ H is an estimate (see text for more information). Stars represent data from ref (Lee et al. 2003)

Table 1 Values of solubility parameter, δ H and dipole moments, µ of the used solvents

If swelling was indicative of compatibility with PDMS for electrochemical measurements, we would expect TFT and toluene to be particularly difficult with DCB and NOP on an intermediate level, and PPP and ACN to be un-problematic. Indeed, toluene is very hard to work with. We did not manage to record any useful electrochemical data using toluene because the solvent very quickly leaks out of the channel. For this reason, PDMS is often used as a membrane for pervaporative separation of toluene from water (Panek and Konieczny 2009).

However, with TFT as a solvent, it was possible to record stable electrochemical data for the whole 4 h duration of the experimental series. During the course of the experiment, the position of the oxidation peak in the square-wave voltammograms was very stable (Fig. 2a) and the current decreased only about 10 % from its original value (Fig. 2b). This decrease is slightly higher than for the other compounds (Fig. 2c, d) and could be related to dissolution of PDMS oligomers that partially blocks the electrode (See Fig S1 & S2 in ESI for CVs and SWVs of all compounds.). Although we could not see any deposition on the electrode after use, a significant decrease in the current when using other solvents was observed (see Fig S3 in ESI).

Fig. 2
figure 2

Square-wave voltammograms (a) and cyclic voltammograms (b) of the oxidation of ferrocene in TFT after 0 (black), 1 (red), 2 (green), 3 (blue) and 4 h (magenta). c Change in position of the ferrocene oxidation peak over the course of the experiments for the different solvents. d Limiting current in CVs of ferrocene oxidation in different solvents. Current normalised to the first measurement in the time series. Black squares—ACN, red circles—DCB, blue triangles—NOP, pink diamonds—TFT, olive open triangles—PPP and brown stars—water

The electrochemical signals in PPP are very resistive, and the stability is hard to determine. However, the same behaviour is seen under static conditions (see Fig S4 in ESI) with the reference and working electrodes placed in close proximity. The use of PPP for electrochemical experiments is mainly restricted to ion transfer at three-phase junctions, in which case one of the liquid phases can be highly resistive without negative influence on the results (Katif et al. 2008; Collins et al. 2012).

Using TFT as a solvent, we observed a very fast partitioning of the fluorescent dye from the solvent into the PDMS (see Fig. 3 and Fig S5 in ESI). Using fluorescent laser scanning microscopy, we could follow the diffusion of the dye Rhodamine 101 inner salt into the PDMS. In Fig. 3, we see the fluorescence signal along a line perpendicular to the channel over time. The point where the TFT/Rhodamine is pumped into the channel can clearly be seen, and then the fluorescent signal is spreading away from the channel. By fitting the fluorescence as a function of space and/or time, we can determine the diffusion coefficient of Rhodamine in TFT into PDMS. To a first approximation, we can see this as one-dimensional diffusion from a point source with a constant concentration, c 0 . For such a system, the diffusion equation can be solved analytically as

$$c\left( {x,t} \right) = c_{0} erfc\left( {\frac{x}{{2\sqrt {Dt} }}} \right)$$
Fig. 3
figure 3

Fluorescence from Rhodamine 101 inner salt imaged by laser scanning confocal microscopy. The image shows the fluorescence along a single horizontal line over time. The channel can be seen at the top of the images outlined by scattering from the channel wall (marked by a dashed line), and the lower part of the image is inside the PDMS slab. The height of the line is in the middle of the channel. The moment when the dye is pumped into the channel can clearly be seen as the start of fluorescence in the channel. The flow rate is kept at 10 µl min-1 during the experiment. Scale bars are 10 s in t and 200 µm in y

Fitting Eq. 1 to fluorescence profiles at a fixed t or fixed x (see supplemental information), we get a diffusion coefficient D = 6–12 × 10−8 cm2 s−1, where the uncertainty comes both from the one-dimensional approximation (the 2D system does not have an analytical solution) and from the bleaching of the fluorophore which makes the fluorescent profile dependent not only on diffusion. Despite this, the obtained value is consistent with values in the literature for diffusion of toluene and benzene into PDMS (2 × 10−8 and 7 × 10−8 cm2 s−1, respectively) (Chao et al. 2011), which shows that the Rhodamine is carried with the solvent almost unhindered through the PDMS. This might be a problem if analyte is lost into the PDMS slab.


The electrochemical measurements show that many organic solvents thought of as incompatible with microchannels made from PDMS actually provide stable voltammetric signals over the course of several hours. Although the solvent with the highest swelling parameter, toluene, is not compatible with PDMS, trifluorotoluene, which shows almost as high swelling as toluene, gives relatively stable electrochemistry in a PDMS channel. The other tested solvents, ranging from moderate to low swelling, showed very consistent electrochemistry over the whole experimental series, the exception being PPP which shows very resistive electrochemistry also under static conditions.

The conclusion of this study, in contrast to the paper by Lee et al. (2003), is that although there is a good correlation between swelling and solubility parameter, we do not find that swelling is a good measure for compatibility with PDMS in electrochemical experiments.


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The authors thank Dr Tomasz Kalwarczyk from the Institute of Physical Chemistry for his help with confocal microscopy. This work was financially supported by the Polish National Science Centre through Grants NCN 2014/15/D/ST4/03003 (WA), NCN 2015/16/T/ST4/00495 (DK), and NCN 2014/15/B/ST4/04646 (MJN).

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Adamiak, W., Kałuża, D. & Jönsson-Niedziolka, M. Compatibility of organic solvents for electrochemical measurements in PDMS-based microfluidic devices. Microfluid Nanofluid 20, 127 (2016).

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  • Microfluidics
  • PDMS
  • Organic solvents
  • Swelling
  • Solubility parameter
  • Electrochemistry