Skip to main content

Advertisement

Log in

A Hybrid Framework of Dual-Domain Signal Restoration and Multi-depth Feature Reinforcement for Low-Dose Lung CT Denoising

  • Published:
Journal of Imaging Informatics in Medicine Aims and scope Submit manuscript

Abstract

Low-dose computer tomography (LDCT) has been widely used in medical diagnosis. Various denoising methods have been presented to remove noise in LDCT scans. However, existing methods cannot achieve satisfactory results due to the difficulties in (1) distinguishing the characteristics of structures, textures, and noise confused in the image domain, and (2) representing local details and global semantics in the hierarchical features. In this paper, we propose a novel denoising method consisting of (1) a 2D dual-domain restoration framework to reconstruct noise-free structure and texture signals separately, and (2) a 3D multi-depth reinforcement U-Net model to further recover image details with enhanced hierarchical features. In the 2D dual-domain restoration framework, the convolutional neural networks are adopted in both the image domain where the image structures are well preserved through the spatial continuity, and the sinogram domain where the textures and noise are separately represented by different wavelet coefficients and processed adaptively. In the 3D multi-depth reinforcement U-Net model, the hierarchical features from the 3D U-Net are enhanced by the cross-resolution attention module (CRAM) and dual-branch graph convolution module (DBGCM). The CRAM preserves local details by integrating adjacent low-level features with different resolutions, while the DBGCM enhances global semantics by building graphs for high-level features in intra-feature and inter-feature dimensions. Experimental results on the LUNA16 dataset and 2016 NIH-AAPM-Mayo Clinic LDCT Grand Challenge dataset illustrate the proposed method outperforms the state-of-the-art methods on removing noise from LDCT images with clear structures and textures, proving its potential in clinical practice.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

Data Availability

The datasets we used in experiments are two public datasets and we have cited at the beginning of "Simulated Dataset" and "Real-world Dataset".

References

  1. Pearce, M.S., Salotti, J.A., Little, M.P., McHugh, K., Lee, C., Kim, K.P., Howe, N.L., Ronckers, C.M., Rajaraman, P., Craft, A.W., et al: Radiation exposure from ct scans in childhood and subsequent risk of leukaemia and brain tumours: a retrospective cohort study. The Lancet 380(9840), 499–505 (2012)

  2. Balda, M., Hornegger, J., Heismann, B.: Ray contribution masks for structure adaptive sinogram filtering. IEEE transactions on medical imaging 31(6), 1228–1239 (2012)

  3. Manduca, A., Yu, L., Trzasko, J.D., Khaylova, N., Kofler, J.M., McCollough, C.M., Fletcher, J.G.: Projection space denoising with bilateral filtering and ct noise modeling for dose reduction in ct. Medical physics 36(11), 4911–4919 (2009)

  4. Wang, J., Li, T., Lu, H., Liang, Z.: Penalized weighted least-squares approach to sinogram noise reduction and image reconstruction for low-dose x-ray computed tomography. IEEE transactions on medical imaging 25(10), 1272–1283 (2006)

  5. Yin, X., Zhao, Q., Liu, J., Yang, W., Yang, J., Quan, G., Chen, Y., Shu, H., Luo, L., Coatrieux, J.-L.: Domain progressive 3d residual convolution network to improve low-dose ct imaging. IEEE transactions on medical imaging 38(12), 2903–2913 (2019)

  6. Bruno, D.M., Samit, B.: Distance-driven projection and backprojection in three dimensions. Physics in Medicine and Biology 49(11), 2463–2475 (2004)

  7. Ramani, S., Fessler, J.A.: A splitting-based iterative algorithm for accelerated statistical x-ray ct reconstruction. IEEE Transactions on Medical Imaging 31(3), 677–688 (2012)

  8. Yang, Q., Yan, P., Zhang, Y., Yu, H., Shi, Y., Mou, X., Kalra, M.K., Zhang, Y., Sun, L., Wang, G.: Low-dose ct image denoising using a generative adversarial network with wasserstein distance and perceptual loss. IEEE transactions on medical imaging 37(6), 1348–1357 (2018)

  9. Chen, H., Zhang, Y., Kalra, M.K., Lin, F., Chen, Y., Liao, P., Zhou, J., Wang, G.: Low-dose ct with a residual encoder-decoder convolutional neural network. IEEE transactions on medical imaging 36(12), 2524–2535 (2017)

  10. Perona, P., Malik, J.: Scale-space and edge detection using anisotropic diffusion. IEEE Transactions on pattern analysis and machine intelligence 12(7), 629–639 (1990)

  11. Aharon, M., Elad, M., Bruckstein, A.: K-svd: An algorithm for designing overcomplete dictionaries for sparse representation. IEEE Transactions on signal processing 54(11), 4311–4322 (2006)

  12. Ren, C., He, X., Wang, C., Zhao, Z.: Adaptive consistency prior based deep network for image denoising. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 8596–8606 (2021)

  13. Dong, C., Loy, C.C., He, K., Tang, X.: Image super-resolution using deep convolutional networks. IEEE transactions on pattern analysis and machine intelligence 38(2), 295–307 (2015)

  14. Ronneberger, O., Fischer, P., Brox, T.: U-net: Convolutional networks for biomedical image segmentation. In: International Conference on Medical Image Computing and Computer-assisted Intervention, pp. 234–241 (2015). Springer

  15. Huang, Z., Zhang, J., Zhang, Y., Shan, H.: Du-gan: Generative adversarial networks with dual-domain u-net based discriminators for low-dose ct denoising. arXiv preprint arXiv:2108.10772 (2021)

  16. Wang, D., Fan, F., Wu, Z., Liu, R., Wang, F., Yu, H.: Ctformer: Convolution-free token2token dilated vision transformer for low-dose ct denoising. arXiv preprint arXiv:2202.13517 (2022)

  17. Feng, Z., Cai, A., Wang, Y., Li, L., Tong, L., Yan, B.: Dual residual convolutional neural network (drcnn) for low-dose ct imaging. Journal of X-Ray Science and Technology 29(1), 91–109 (2021)

  18. Li, M., Hsu, W., Xie, X., Cong, J., Gao, W.: Sacnn: Self-attention convolutional neural network for low-dose ct denoising with self-supervised perceptual loss network. IEEE transactions on medical imaging 39(7), 2289–2301 (2020)

  19. Huang, Z., Liu, Z., He, P., Ren, Y., Li, S., Lei, Y., Luo, D., Liang, D., Shao, D., Hu, Z., et al.: Segmentation-guided denoising network for low-dose ct imaging. Computer Methods and Programs in Biomedicine, 107199 (2022)

  20. Chen, H., Zhang, Y., Zhang, W., Liao, P., Li, K., Zhou, J., Wang, G.: Low-dose ct denoising with convolutional neural network. In: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 143–146 (2017)

  21. Sidky, E.Y., Pan, X.: Image reconstruction in circular cone-beam computed tomography by constrained, total-variation minimization. Physics in Medicine & Biology 53(17), 4777 (2008)

  22. Kang, E., Min, J., Ye, J.C.: A deep convolutional neural network using directional wavelets for low-dose x-ray ct reconstruction. Medical physics 44(10), 360–375 (2017)

  23. Marcos, L., Quint, F., Babyn, P., Alirezaie, J.: Dilated convolution resnet with boosting attention modules and combined loss functions for ldct image denoising. In: 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pp. 1548–1551 (2022). IEEE

  24. Vaswani, A., Shazeer, N., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A.N., Kaiser, Ł., Polosukhin, I.: Attention is all you need. Advances in neural information processing systems 30 (2017)

  25. Kulathilake, K., Abdullah, N.A., Sabri, A.Q.M., Lai, K.W.: A review on deep learning approaches for low-dose computed tomography restoration. Complex & Intelligent Systems, 1–33 (2021)

  26. Wolterink, J.M., Leiner, T., Viergever, M.A., Išgum, I.: Generative adversarial networks for noise reduction in low-dose ct. IEEE transactions on medical imaging 36(12), 2536–2545 (2017)

  27. Kang, E., Koo, H.J., Yang, D.H., Seo, J.B., Ye, J.C.: Cycle-consistent adversarial denoising network for multiphase coronary ct angiography. Medical Physics 46(2), 550–562 (2019)

  28. Zhu, J.-Y., Park, T., Isola, P., Efros, A.A.: Unpaired image-to-image translation using cycle-consistent adversarial networks. In: 2017 IEEE International Conference on Computer Vision (ICCV), pp. 2242–2251 (2017)

  29. Shan, H., Zhang, Y., Yang, Q., Kruger, U., Kalra, M.K., Sun, L., Cong, W., Wang, G.: 3-d convolutional encoder-decoder network for low-dose ct via transfer learning from a 2-d trained network. IEEE transactions on medical imaging 37(6), 1522–1534 (2018)

  30. Green, M., Marom, E.M., Konen, E., Kiryati, N., Mayer, A.: 3-d neural denoising for low-dose coronary ct angiography (ccta). Computerized Medical Imaging and Graphics 70, 185–191 (2018)

  31. Gunduzalp, D., Cengiz, B., Unal, M.O., Yildirim, I.: 3d u-netr: Low dose computed tomography reconstruction via deep learning and 3 dimensional convolutions. arXiv preprint arXiv:2105.14130 (2021)

  32. Wang, H., Zhao, X., Liu, W., Li, L.C., Ma, J., Guo, L.: Texture-aware dual domain mapping model for low-dose ct reconstruction. Medical Physics (2022)

  33. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3d u-net: learning dense volumetric segmentation from sparse annotation. In: International Conference on Medical Image Computing and Computer-assisted Intervention, pp. 424–432 (2016). Springer

  34. Bera, S., Biswas, P.K.: Self supervised low dose computed tomography image denoising using invertible network exploiting inter slice congruence. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 5614–5623 (2023)

  35. Chi, J., Sun, Z., Wang, H., Lyu, P., Yu, X., Wu, C.: Ct image super-resolution reconstruction based on global hybrid attention. Computers in Biology and Medicine 150, 106112 (2022)

  36. Tong, T., Li, G., Liu, X., Gao, Q.: Image super-resolution using dense skip connections. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 4799–4807 (2017)

  37. Zhang, J., Cao, L., Wang, T., Fu, W., Shen, W.: Nhnet: A non-local hierarchical network for image denoising. IET Image Processing 16(9), 2446–2456 (2022)

  38. Setio, A.A.A., Traverso, A., De Bel, T., Berens, M.S., Van Den Bogaard, C., Cerello, P., Chen, H., Dou, Q., Fantacci, M.E., Geurts, B., et al: Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: the luna16 challenge. Medical image analysis 42, 1–13 (2017)

  39. McCollough, C.H., Bartley, A.C., Carter, R.E., Chen, B., Drees, T.A., Edwards, P., Holmes III, D.R., Huang, A.E., Khan, F., Leng, S., et al: Low-dose ct for the detection and classification of metastatic liver lesions: results of the 2016 low dose ct grand challenge. Medical physics 44(10), 339–352 (2017)

  40. Xu, Q., Zhang, C., Zhang, L.: Denoising convolutional neural network. In: 2015 IEEE International Conference on Information and Automation, pp. 1184–1187 (2015). IEEE

  41. Zhang, K., Zuo, W., Gu, S., Zhang, L.: Learning deep cnn denoiser prior for image restoration. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 3929–3938 (2017)

  42. Tai, Y., Yang, J., Liu, X., Xu, C.: Memnet: A persistent memory network for image restoration. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 4539–4547 (2017)

  43. Anwar, S., Barnes, N.: Real image denoising with feature attention. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 3155–3164 (2019)

Download references

Funding

This work was supported by the National Natural Science Foundation of China under Grants 61901098 and 61971118, and Science and Technology Plan of Liaoning Province 2021JH1/10400051.

Author information

Authors and Affiliations

Authors

Contributions

All authors contributed to the study conception and design. Methodology was presented by Jianning Chi and Zhiyi Sun. Material preparation, data collection and analysis were performed by Jianning Chi, Zhiyi Sun, Shuyu Tian, and Huan Wang. The first draft of the manuscript was written by Zhiyi Sun and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.

Corresponding author

Correspondence to Jianning Chi.

Ethics declarations

Ethics Approval

Not applicable.

Consent to Participate

Not applicable.

Consent for Publication

Not applicable.

Competing Interests

The authors declare no competing interests.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Chi, J., Sun, Z., Tian, S. et al. A Hybrid Framework of Dual-Domain Signal Restoration and Multi-depth Feature Reinforcement for Low-Dose Lung CT Denoising. J Digit Imaging. Inform. med. (2024). https://doi.org/10.1007/s10278-023-00934-6

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s10278-023-00934-6

Keywords

Navigation