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Visualization of Nuclear Localization of Transcription Factors with Cyan and Green Fluorescent Proteins in the Red Alga Porphyra yezoensis

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Abstract

Transcription factors play a central role in expression of genomic information in all organisms. The objective of our study is to analyze the function of transcription factors in red algae. One way to analyze transcription factors in eukaryotic cells is to study their nuclear localization, as reported for land plants and green algae using fluorescent proteins. There is, however, no report documenting subcellular localization of transcription factors from red algae. In the present study, using the marine red alga Porphyra yezoensis, we confirmed for the first time successful expression of humanized fluorescent proteins (ZsGFP and ZsYFP) from a reef coral Zoanthus sp. and land plant-adapted sGFP(S65T) in gametophytic cells comparable to expression of AmCFP. Following molecular cloning and characterization of transcription factors DP-E2F-like 1 (PyDEL1), transcription elongation factor 1 (PyElf1) and multiprotein bridging factor 1 (PyMBF1), we then demonstrated that ZsGFP and AmCFP can be used to visualize nuclear localization of PyElf1 and PyMBF1. This is the first report to perform visualization of subcellular localization of transcription factors as genome-encoded proteins in red algae.

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References

  • Alexandre CM, Hennig L (2008) FLC or not FLC: the other side of vernalization. J Exp Bot 59:1127–1135

    Article  CAS  PubMed  Google Scholar 

  • Asamizu E, Nakajima M, Kitade Y, Saga N, Nakamura Y, Tabata S (2003) Comparison of RNA expression profiles between the two generations of Porphyra yezoensis (Rhodophyta), based on expressed sequence tag frequency analysis. J Phycol 39:923–930

    Google Scholar 

  • Babinger K, Hallmann A, Schmitt R (2006) Translational control of regA, a key gene controlling cell differentiation in Volvox carteri. Development 133:4045–4051

    Article  CAS  PubMed  Google Scholar 

  • Bisova K, Krylov DM, Umen JG (2005) Genome-wide annotation and expression profiling of cell cycle regulatory genes in Chlamydomonas reinhardtii. Plant Physiol 137:475–479

    Article  CAS  PubMed  Google Scholar 

  • Brendel C, Gelman L, Auwerx J (2002) Multiprotein bridging factor-1 (MBF-1) is a cofactor for nuclear receptors that regulate lipid metabolism. Mol Endocrinol 16:1367–1377

    Article  CAS  PubMed  Google Scholar 

  • Camuzeaux B, Spriet C, Héliot L, Coll J, Duterque-Coquillaud M (2005) Imaging Erg and Jun transcription factor interaction in living cells using fluorescence resonance energy transfer analyses. Biochem Biophys Res Commun 332:1107–1114

    Article  CAS  PubMed  Google Scholar 

  • Chinnusamy V, Zhu J, Zhu JK (2007) Cold stress regulation of gene expression in plants. Trends Plant Sci 12:444–451

    Article  CAS  PubMed  Google Scholar 

  • Di Stefano L, Jensen MR, Helin K (2003) E2F7, a novel E2F featuring DP-independent repression of a subset of E2F-regulated genes. EMBO J 22:6289–6298

    Article  PubMed  Google Scholar 

  • Fukuda S, Mikami K, Uji T, Park EJ, Ohba T, Asada K, Kitade Y, Endo H, Kato I, Saga N (2008) Factors influencing efficiency of transient gene expression in the red macrophyte Porphyra yezoensis. Plant Sci 174:329–339

    CAS  Google Scholar 

  • Goodenough U, Lin H, Lee JH (2007) Sex determination in Chlamydomonas. Semin Cell Dev Biol 18:350–361

    Article  CAS  PubMed  Google Scholar 

  • Hu H, You J, Fang Y, Zhu X, Qi Z, Xiong L (2008) Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice. Plant Mol Biol 67:169–181

    Article  CAS  PubMed  Google Scholar 

  • Kosugi S, Ohashi Y (2002) E2Ls, E2F-like repressors of Arabidopsis that bind to E2F. J Biol Chem 277:16553–16558

    Article  CAS  PubMed  Google Scholar 

  • Li J, Li X, Guo L, Lu F, Feng X, He K, Wei L, Chen Z, Qu LJ, Gu H (2006) A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. J Exp Bot 57:1263–1273

    Article  CAS  PubMed  Google Scholar 

  • Li GL, Roy B, Li XH, Yue WF, Wu XF, Liu JM, Zhang CX, Miao YG (2008) Quantification of silkworm coactivator of MBF1 mRNA by SYBR Green I real-time RT-PCR reveals tissue- and stage-specific transcription levels. Mol Biol Rep 36:1217–1223

    Article  PubMed  Google Scholar 

  • Liu QX, Jindra M, Ueda H, Hiromi Y, Hirose S (2003) Drosophila MBF1 is a co-activator for Tracheae Defective and contributes to the formation of tracheal and nervous systems. Development 130:719–728

    Article  CAS  PubMed  Google Scholar 

  • Liu QX, Nakashima-Kamimura N, Ikeo K, Hirose S, Gojobori T (2007) Compensatory change of interacting amino acids in the coevolution of transcriptional coactivator MBF1 and TATA-box-binding protein. Mol Biol Evol 24:1458–1463

    Article  CAS  PubMed  Google Scholar 

  • Malone E, Fassler JS, Winston F (1993) Molecular and genetic characterization of SPT4, a gene important for transcription initiation in Saccharomyces cerevisiae. Mol Gen Genet 237:449–459

    CAS  PubMed  Google Scholar 

  • Mikami K, Uji T, Li L, Takahashi M, Yasui H, Saga N (2009) Visualization of Phosphoinositides via the development of the transient expression system of a cyan fluorescent protein in the red alga Porphyra yezoensis. Mar Biotechnol doi:10.1007/s10126-008-9172-z

    Google Scholar 

  • Nikaido I, Asamizu E, Nakajima M, Nakamura Y, Saga N, Tabata S (2000) Generation of 10, 154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis. DNA Res 7:223–227

    Article  PubMed  Google Scholar 

  • Niwa Y, Hirano T, Yoshimoto K, Shimizu M, Kobayashi H (1999) Non-invasive quantitative detection and applications of non-toxic, S65T-type green fluorescent protein in living plants. Plant J 18:455–463

    Article  CAS  PubMed  Google Scholar 

  • Nowak K, Luniak N, Meyer S, Schulze J, Mendel RR, Hänsch R (2004) Fluorescent proteins in poplar: a useful tool to study promoter function and protein localization. Plant Biol 6:65–73

    Article  CAS  PubMed  Google Scholar 

  • Pnueli L, Hallak-Herr E, Rozenberg M, Cohen M, Goloubinoff P, Kaplan A, Mittler R (2002) Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam. Plant J 31:319–330

    Article  CAS  PubMed  Google Scholar 

  • Prather D, Krogan NJ, Emili A, Greenblatt JF, Winston F (2005) Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae. Mol Cell Biol 25:10122–35

    Article  CAS  PubMed  Google Scholar 

  • Qian X, Gozani SN, Yoon H, Jeon CJ, Agarwal K, Weiss MA (1993) Novel zinc finger motif in the basal transcriptional machinery: three-dimensional NMR studies of the nucleic acid binding domain of transcriptional elongation factor TFIIS. Biochemistry 32:9944–9959

    Article  CAS  PubMed  Google Scholar 

  • Reines D, Conaway JW, Conaway RC (1996) The RNA polymerase II general elongation factors. Trends Biochem Sci 21:351–355

    CAS  PubMed  Google Scholar 

  • Robbens S, Khadaroo B, Camasses A, Derelle E, Ferraz C, Inzé D, Van de Peer Y, Moreau H (2005) Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri. Mol Biol Evol 22:589–597

    Article  CAS  PubMed  Google Scholar 

  • Saga N, Kitade Y (2002) Porphyra: a model plant in marine sciences. Fish Sci 68(Suppl):1075–1078

    Google Scholar 

  • Saleh A, Lumbreras V, Lopez C, Dominguez-Puigjaner E, Kizis D, Pagès M (2006) Maize DBF1-interactor protein 1 containing an R3H domain is a potential regulator of DBF1 activity in stress responses. Plant J 46:747–757

    Article  CAS  PubMed  Google Scholar 

  • Shah K, Russinova E, Gadella TWJ Jr, Willemse J, de Vries SC (2002) The Arabidopsis kinase-associated protein phosphatase controls internalization of the somatic embryogenesis receptor kinase 1. Genes Dev 16:1707–1720

    Article  CAS  PubMed  Google Scholar 

  • Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58:221–227

    Article  CAS  PubMed  Google Scholar 

  • Sugikawa Y, Ebihara S, Tsuda K, Niwa Y, Yamazaki K (2005) Transcriptional coactivator MBF1s from Arabidopsis predominantly localize in nucleolus. J Plant Res 118:431–437

    Article  CAS  PubMed  Google Scholar 

  • Takemaru K, Harashima S, Ueda H, Hirose S (1998) Yeast coactivator MBF1 mediates GCN4-dependent transcriptional activation. Mol Cell Biol 18:4971–4976

    CAS  PubMed  Google Scholar 

  • Tani T, Sobajima H, Okada K, Chujo T, Arimura S, Tsutsumi N, Nishimura M, Seto H, Nojiri H, Yamane H (2008) Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice. Planta 227:517–526

    Article  CAS  PubMed  Google Scholar 

  • Tsuda K, Yamazaki K (2004) Structure and expression analysis of three subtypes of Arabidopsis MBF1 genes. Biochim Biophys Acta 1680:1–10

    CAS  PubMed  Google Scholar 

  • Vandepoele K, Raes J, De Veylder L, Rouzé P, Rombauts S, Inzé D (2002) Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell 14:903–916

    Article  CAS  PubMed  Google Scholar 

  • Vermeer JE, Thole JM, Goedhart J, Nielsen E, Munnik T, Gadella TW Jr (2009) Imaging phosphatidylinositol 4-phosphate dynamics in living plant cells. Plant J 57:356–372

    Article  CAS  PubMed  Google Scholar 

  • Vlieghe K, Boudolf V, Beemster GT, Maes S, Magyar Z, Atanassova A, de Almeida Engler J, De Groodt R, Inzé DD, Veylder L (2005) The DP-E2F-like gene DEL1 controls the endocycle in Arabidopsis thaliana. Curr Biol 15:59–63

    Article  CAS  PubMed  Google Scholar 

  • von Koskull-Döring P, Scharf KD, Nover L (2007) The diversity of plant heat stress transcription factors. Trends Plant Sci 12:452–457

    Article  Google Scholar 

  • Yoshioka S, Taniguchi F, Miura K, Inoue T, Yamano T, Fukuzawa H (2004) The novel Myb transcription factor LCR1 regulates the CO2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Cell 16:1466–1477

    Article  CAS  PubMed  Google Scholar 

  • Zhu Y, Li Z, Xu B, Li H, Wang L, Dong A, Huang H (2008) Subcellular localizations of AS1 and AS2 suggest their common and distinct roles in plant development. J Integr Plant Biol 50:897–905

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

We are grateful to Dr Yasuo Niwa (University of Shizuoka) for kind providing pCaMV35S-sGFP(S65T)-nos3', Dr Hajime Yasui (Hokkaido University, Japan) for kindly providing the microscopes and to our colleagues for helpful discussions. This study was supported in part by a grant from the Sumitomo Foundation (to KM) and by Grants-in-Aid for the 21st COE (Center Of Excellence) Program ‘Marine Bio-Manipulation Frontier for Food Production’ and the City Area Program in Industry-Academia-Government Joint Research (Hakodate area) from the Ministry of Education, Culture, Sports, Science, and Technology, Japan (to NS).

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Correspondence to Koji Mikami.

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Uji, T., Takahashi, M., Saga, N. et al. Visualization of Nuclear Localization of Transcription Factors with Cyan and Green Fluorescent Proteins in the Red Alga Porphyra yezoensis . Mar Biotechnol 12, 150–159 (2010). https://doi.org/10.1007/s10126-009-9210-5

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  • DOI: https://doi.org/10.1007/s10126-009-9210-5

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