Skip to main content
Log in

Identification of a Novel C20-elongase Gene from the Marine Microalgae Pavlova viridis and its Expression in Escherichia coli

  • Original Article
  • Published:
Marine Biotechnology Aims and scope Submit manuscript

Abstract

Pavlova viridis, a species of a unicellular marine microalgae, is rich in the very-long-chain polyunsaturated fatty acids, such as eicosapentaenoic acid (EPA, 20:5n-3) and docosahexaenoic acid (DHA, 22:6n-3). A new elongase gene (elkj), with high identity with a functionally characterized C20-elongase of Pavlova lutheri, was isolated via reverse transcriptase-polymerase chain reaction using the primers designed from conserved motifs and 5′/3′ rapid amplification of cDNA ends. The coding region of 314 amino acids predicted a protein of 34 kDa, which contained seven transmembrane domains with its C-terminal in the cytoplasm and located in the endoplasmic reticulum. The expression of ELKJ in Escherichia coli was carried out by using green fluorescent protein as an indicator, suggesting the correct insertion in cytoplasmic membrane. Functional analysis demonstrated that elkj encoded a C20-elongase that mediated the elongation of EPA into docosapentaenoic acid (22:5n-3), confirming the two-step conversion from EPA to DHA in marine microalga.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Azachi M, Sadka A, Fisher M, Goldshlag P, Gokhman I, Zamir A (2002) Salt induction of fatty acid elongase and membrane lipid modifications in the extreme halotolerant alga Dunaliella salina. Plant Physiol 129:1320–1329

    Article  PubMed  CAS  Google Scholar 

  • Daley DO, Rapp M, Granseth E, Melen K, Drew D, von Heijne G (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308:1321–1323

    Article  PubMed  CAS  Google Scholar 

  • Drew DE, von Heijne G, Nordlund P, de Gier JW (2001) Green fluorescent protein as an indicator to monitor membrane protein overexpression in Escherichia coli. FEBS Lett 507:220–224

    Article  PubMed  CAS  Google Scholar 

  • Drew D, Slotboom DJ, Friso G, Reda T, Genevaux P, Rapp M, Meindl-Beinker NM, Lambert W, Lerch M, Daley DO, Van Wijk KJ, Hirst J, Kunji E, De Gier JW (2005) A scalable, GFP-based pipeline for membrane protein overexpression screening and purification. Protein Sci 14:2011–2017

    Article  PubMed  CAS  Google Scholar 

  • Drew D, Lerch M, Kunji E, Slotboom DJ, de Gier JW (2006) Optimization of membrane protein overexpression and purification using GFP fusions. Nat Methods 3:303–313

    Article  PubMed  CAS  Google Scholar 

  • Granseth E, Daley DO, Rapp M, Melen K, von Heijne G (2005) Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. J Mol Biol 352:489–494

    Article  PubMed  CAS  Google Scholar 

  • Guillard RR, Ryther JH (1962) Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt, and Detonula confervacea (cleve) Gran. Can J Microbiol 8:229–239

    Article  PubMed  CAS  Google Scholar 

  • Jackson MR, Nilsson T, Peterson PA (1990) Identification of a consensus motif for retention of transmembrane proteins in the endoplasmic reticulum. EMBO J 9:3153–3162

    PubMed  CAS  Google Scholar 

  • Knutzon DS, Thurmond JM, Huang YS, Chaudhary S, Bobik EG Jr, Chan GM, Kirchner SJ, Mukerji P (1998) Identification of Delta 5-desaturase from Mortierella alpina by heterologous expression in Bakers’ yeast and canola. J Biol Chem 273:29360–29366

    Article  PubMed  CAS  Google Scholar 

  • Leonard AE, Pereira SL, Sprecher H, Huang YS (2004) Elongation of long-chain fatty acids. Prog Lipid Res 43:36–54

    Article  PubMed  CAS  Google Scholar 

  • Meyer A, Cirpus P, Ott C, Schlecker R, Zahringer U, Heinz E (2003) Biosynthesis of docosahexaenoic acid in Euglena gracilis: biochemical and molecular evidence for the involvement of a Delta 4-fatty acyl group desaturase. Biochemistry 42:9779–9788

    Article  PubMed  CAS  Google Scholar 

  • Meyer A, Kirsch H, Domergue F, Abbadi A, Sperling P, Bauer J, Cirpus P, Zank TK, Moreau H, Roscoe TJ, Zahringer U, Heinz E (2004) Novel fatty acid elongases and their use for the reconstitution of docosahexaenoic acid biosynthesis. J Lipid Res 45:1899–1909

    Article  PubMed  CAS  Google Scholar 

  • Miroux B, Walker JE (1996) Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J Mol Biol 260:289–298

    Article  PubMed  CAS  Google Scholar 

  • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321–4325

    Article  PubMed  CAS  Google Scholar 

  • Neuringer M (2000) Infant vision and retinal function in studies of dietary long-chain polyunsaturated fatty acids: methods, results, and implications. Am J Clin Nutr 71:256S–267S

    PubMed  CAS  Google Scholar 

  • Parker-Barnes JM, Das T, Bobik E, Leonard AE, Thurmond JM, Chaung LT, Huang YS, Mukerji P (2000) Identification and characterization of an enzyme involved in the elongation of n-6 and n-3 polyunsaturated fatty acids. Proc Natl Acad Sci U S A 97:8284–8289

    Article  PubMed  CAS  Google Scholar 

  • Pereira SL, Leonard AE, Huang YS, Chuang LT, Mukerji P (2004) Identification of two novel microalgal enzymes involved in the conversion of the omega3-fatty acid, eicosapentaenoic acid, into docosahexaenoic acid. Biochem J 384:357–366

    Article  PubMed  CAS  Google Scholar 

  • Qiu X, Hong H, MacKenzie SL (2001) Identification of a Delta 4 fatty acid desaturase from Thraustochytrium sp. involved in the biosynthesis of docosahexanoic acid by heterologous expression in Saccharomyces cerevisiae and Brassica juncea. J Biol Chem 276:31561–31566

    Article  PubMed  CAS  Google Scholar 

  • Sprecher H, Chen Q, Yin FQ (1999) Regulation of the biosynthesis of 22:5n-6 and 22:6n-3: a complex intracellular process. Lipids 34(Suppl):S153–S156

    Article  PubMed  CAS  Google Scholar 

  • Tonon T, Harvey D, Larson TR, Graham IA (2003) Identification of a very long chain polyunsaturated fatty acid Delta 4-desaturase from the microalga Pavlova lutheri. FEBS Lett 553:440–444

    Article  PubMed  CAS  Google Scholar 

  • Tully AM, Roche HM, Doyle R, Fallon C, Bruce I, Lawlor B, Coakley D, Gibney MJ (2003) Low serum cholesteryl ester-docosahexaenoic acid levels in Alzheimer’s disease: a case-control study. Br J Nutr 89:483–489

    Article  PubMed  CAS  Google Scholar 

  • Waldo GS, Standish BM, Berendzen J, Terwilliger TC (1999) Rapid protein-folding assay using green fluorescent protein. Nat Biotechnol 17:691–695

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

We would like to thank Prof. Jan-Willem de Gier for providing the pWaldo-gfpd/gfpe plasmids. Financial support for this work was provided by the National Science Foundation of China, grant no. 30370035, the HI-Tech Research and Development Program of China (863), grant no. 2006AA10Z321 and 2006AA10Z344.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jian Kong.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Niu, Y., Kong, J., Fu, L. et al. Identification of a Novel C20-elongase Gene from the Marine Microalgae Pavlova viridis and its Expression in Escherichia coli . Mar Biotechnol 11, 17–23 (2009). https://doi.org/10.1007/s10126-008-9116-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10126-008-9116-7

Keywords

Navigation