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Characterization of new diesel-degrading bacteria isolated from freshwater sediments

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Abstract

As the result of diesel’s extensive production and use as fuel for transportation, pollution with such complex mixtures of hydrocarbons is a major concern worldwide. The present study’s focus was to investigate the presence of diesel-degrading bacteria in different Danube Delta freshwater sediments. Ten bacterial strains capable to grow in a minimal medium with diesel as the sole carbon source were isolated and characterized in this study. Based on the phenotypic and molecular characteristics, the ten strains belong to four genera and seven species, such as Pseudomonas (P. aeruginosa, P. nitroreducens, P. resinovorans, P. multiresinivorans), Acinetobacter (A. tandoii), Bacillus (B. marisflavi), and Stenotrophomonas (S. maltophilia). All these bacteria were excellent biosurfactant producers, and they were able to tolerate saturated hydrocarbons, like n-heptane, n-decane, n-pentadecane, and n-hexadecane. The ten strains possess at least one alkane hydroxylase gene in their genome, and they were also able to tolerate and degrade diesel. Higher biodegradation rates of diesel were acquired for the strains from the genera Pseudomonas, Acinetobacter, and Stenotrophomonas, compared with that obtained for the Bacillus strain. Due to their remarkable potential to degrade diesel and produce biosurfactants, the ten isolated bacteria are attractive candidates for bioremediation of diesel-polluted environments.

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References

  • Al-Wasify RS, Hamed SR (2014) Bacterial biodegradation of crude oil using local isolates. Int J Bacteriol. https://doi.org/10.1155/2014/863272

    Article  Google Scholar 

  • Borah D, Yadav RNS (2014) Biodegradation of diesel, crude oil, kerosene and used engine oil by a newly isolated Bacillus cereus strain DRDU1 from an automobile engine in liquid culture. Arab J Sci Eng 39:5337–5345

    Article  CAS  Google Scholar 

  • Chaudhary DK, Bajagain R, Jeong SW, Kim J (2020) Biodegradation of diesel oil and n-alkanes (C18, C20, and C22) by a novel strain Acinetobacter sp. K-6 in unsaturated soil. Environ Eng Res 25:290–298

    Article  Google Scholar 

  • Chirwa EMN, Bezza FA (2015) Petroleum hydrocarbon spills in the environment and abundance of microbial community capable of biosurfactant production. J Pet Environ Biotechnol 6. https://doi.org/10.4172/2157-7463.1000237

  • Darsa KV, Joseph Thatheyus A, Ramya D (2014) Biodegradation of petroleum compound using the bacterium Bacillus subtilis. Sci Int 2:20–25

    Article  Google Scholar 

  • Das N, Chandran P (2011) Microbial degradation of petroleum hydrocarbon contaminants: an overview. Biotechnol Res Int. https://doi.org/10.4061/2011/941810

    Article  Google Scholar 

  • Eberlin LS, Abdelnur PV, Passero A, de Sa GF, Daroda RJ, de Souza V, Eberlin MN (2009) Analysis of biodiesel and biodiesel-petrodiesel blends by high performance thin layer chromatography combined with easy ambient sonic-spray ionization mass spectrometry. Analyst 134:1652–1657

    Article  CAS  Google Scholar 

  • Fenibo EO, Ijoma GN, Selvarajan R, Chikere CB (2019) Microbial surfactants: the next generation multifunctional biomolecules for applications in the petroleum industry and its associated environmental remediation. Microorg 7:581. https://doi.org/10.3390/microorganisms7110581

    Article  CAS  Google Scholar 

  • Gesheva V, Stackebrandt E, Vasileva-Tonkova E (2010) Biosurfactant production by halotolerant Rhodococcus fascians from Casey Station, Wilkes Land, Antarctica. Curr Microbiol 61:112–117

    Article  CAS  Google Scholar 

  • Holt JG, Krieg NR, Sneath PHA, Staley JT, Williams ST (1994) Bergey’s Manual of Determinative Bacteriology, 9th edn. Williams and Wilkins, Baltimore, USA

    Google Scholar 

  • Jeon BY, Jung IL, Park DH (2011) Mineralization of petroleum contaminated wastewater by co-culture of petroleum-degrading bacterial community and biosurfactant-producing bacterium. J Environ Protection 2:895–902

    Article  CAS  Google Scholar 

  • Jurelevicius D, Alvarez VM, Marques JM, de Sousa Lima LRF, de Almeida DF, Seldin L (2013) Bacterial community response to petroleum hydrocarbon amendments in freshwater, marine, and hypersaline water-containing microcosms. Appl Environ Microbiol 79:5927–5935

    Article  CAS  Google Scholar 

  • Kobayashi H, Yamamoto M, Aono R (1998) Appearance of a stress response protein, phage shock protein A, in Escherichia coli exposed to hydrophobic organic solvents. Microbiol 144:353–359

    Article  CAS  Google Scholar 

  • Kohno T, Sugimoto Y, Sei K, Mori K (2002) Design of PCR primers and gene probes for general detection of alkane-degrading bacteria. Microbes Environ 17:114–121

    Article  Google Scholar 

  • Larik IA, Qazi MA, Phulpoto AH, Haleem A, Ahmed S, Kanhar NA (2019) Stenotrophomonas maltophilia strain 5DMD: an efficient biosurfactant-producing bacterium for biodegradation of diesel oil and used engine oil. Int J Environ Sci Technol 16:259–268

    Article  CAS  Google Scholar 

  • Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Wade WG (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microb 64:795–799

    Article  CAS  Google Scholar 

  • McGenity TJ, Folwell BD, McKew BA, Sanni GO (2012) Marine crude-oil biodegradation: a central role for interspecies interactions. Aquat Biosyst 8. https://doi.org/10.1186/2046-9063-8-10

  • Medina G, Juárez K, Valderrama B, Soberón-Chávez G (2003) Mechanism of Pseudomonas aeruginosa RhlR transcriptional regulation of the rhlAB promoter. J Bacteriol 185:5976–5983

    Article  CAS  Google Scholar 

  • Michaud L, Di Cello F, Brilli M, Fani R, Lo Giudice A, Bruni V (2004) Biodiversity of cultivable Antarctic psychrotrophic marine bacteria isolated from Terra Nova Bay (Ross Sea). FEMS Microbiol Lett 230:63–71

    Article  CAS  Google Scholar 

  • Nielsen LE, Kadavy DR, Rajagopal S, Drijber R, Nickerson KW (2005) Survey of extreme solvent tolerance in gram-positive cocci: membrane fatty acid changes in Staphylococcus haemolyticus grown in toluene. Appl Environ Microbiol 71:5171–5176

    Article  CAS  Google Scholar 

  • Ogino H, Miyamoto K, Ishikawa H (1994) Organic solvent-tolerant bacterium which secretes an organic solvent-stable lipolytic enzyme. Appl Environ Microbiol 60:3884–3886

    Article  CAS  Google Scholar 

  • Ossai IC, Ahmed A, Hassan A, Hamid FS (2020) Remediation of soil and water contaminated with petroleum hydrocarbon: a review. Environ Technol Innov 17:100526. https://doi.org/10.1016/j.eti.2019.100526

    Article  Google Scholar 

  • Phulpoto IA, Hu B, Wang Y, Ndayisenga F, Li J, Yu Z (2021) Effect of natural microbiome and culturable biosurfactants-producing bacterial consortia of freshwater lake on petroleum-hydrocarbon degradation. Sci Total Environ 751:141720. https://doi.org/10.1016/j.scitotenv.2020.141720

    Article  CAS  Google Scholar 

  • Rikalović MG, Vrvić MM, Karadžić IM (2015) Rhamnolipid biosurfactant from Pseudomonas aeruginosa – from discovery to application in contemporary technology. J Serb Chem Soc 80:279–304

    Article  Google Scholar 

  • Rizzo P, Malerba M, Bucci A, Sanangelantoni AM, Remelli S, Celico F (2020) Potential enhancement of the in-situ bioremediation of contaminated sites through the isolation and screening of bacterial strains in natural hydrocarbon springs. Water 12:2090. https://doi.org/10.3390/w12082090

    Article  CAS  Google Scholar 

  • Sambrook J, Russel D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Sarafin Y, Donio MBS, Velmurugan S, Michaelbabu M, Citarasu T (2014) Kocuria marina BS-15 a biosurfactant producing halophilic bacteria isolated from solar salt works in India. Saudi J Biol Sci 21:511–519

    Article  CAS  Google Scholar 

  • Satpute SK, Bhawsar BD, Dhakephalkar PK, Chopade BA (2008) Assessment of different screening methods for selecting biosurfactant producing marine bacteria. Indian J Marine Sci 37:243–250

    CAS  Google Scholar 

  • Siegmund I, Wagner F (1991) New method for detecting rhamnolipids excreted by Pseudomonas species during growth on mineral agar. Biotechnol Tech 5:265–268

    Article  CAS  Google Scholar 

  • Stancu MM (2018) Bacterial degradation of petroleum and petroleum products. J Mol Microbiol 2(1):2

    Google Scholar 

  • Stancu MM (2020) Kerosene tolerance in Achromobacter and Pseudomonas species. Ann Microbiol 70. https://doi.org/10.1186/s13213-020-01543-2

  • van Dorst JM, Hince G, Snape I, Ferrari BC (2016) Novel culturing techniques select for heterotrophs and hydrocarbon degraders in a subantarctic soil. Sci Rep 6:36724. https://doi.org/10.1038/srep36724

    Article  CAS  Google Scholar 

  • Varjani SJ (2017) Microbial degradation of petroleum hydrocarbons. Bioresour Technol 223:277–286

    Article  CAS  Google Scholar 

  • Versalovic J, Schneider M, de Brujin FJ, Lupski JR (1994) Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5:25–40

    CAS  Google Scholar 

  • Whyte LG, Greer CW, Inniss WE (1996) Assessment of the biodegradation potential of psychrotrophic microorganisms. Can J Microbiol 42:99–106

    Article  CAS  Google Scholar 

  • Wu Y, Xu M, Xue J, Shi K, Gu M (2019) Characterization and enhanced degradation potentials of biosurfactant-producing bacteria isolated from a marine environment. ACS Omega 4:1645–1651

    Article  CAS  Google Scholar 

  • Zanaroli G, Di Toro S, Todaro D, Varese GC, Bertolotto A, Fava F (2010) Characterization of two diesel fuel degrading microbial consortia enriched from a non acclimated, complex source of microorganisms. Microb Cell Fact 9. https://doi.org/10.1186/1475-2859-9-10

  • Zdarta A, Smułek W, Pacholak A, Dudzińska-Bajorek B, Kaczorek E (2020) Surfactant addition in diesel oil degradation–how can it help the microbes? J Environ Health Sci Eng 18:677–686

    Article  Google Scholar 

  • Zhang Z, Hou Z, Yang C, Ma C, Tao F, Xu P (2011) Degradation of n-alkanes and polycyclic aromatic hydrocarbons in petroleum by a newly isolated Pseudomonas aeruginosa DQ8. Biores Technol 102:4111–4116

    Article  CAS  Google Scholar 

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Acknowledgements

The author thanks Dr. Sandu Cristina and Dumitrache Cristina-Alina for providing the freshwater sediment samples. The author is grateful to Ana Dinu for her technical support.

Funding

The study was funded by project no. RO1567-IBB05/2016, RO1567-IBB05/2022 from the Institute of Biology Bucharest of Romanian Academy.

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MMS planned and executed the laboratory experiments, and wrote the manuscript. The author read and approved the final manuscript.

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Correspondence to Mihaela Marilena Stancu.

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Stancu, M.M. Characterization of new diesel-degrading bacteria isolated from freshwater sediments. Int Microbiol 26, 109–122 (2023). https://doi.org/10.1007/s10123-022-00277-2

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