In vitro efficacy of ARQ 092, an allosteric AKT inhibitor, on primary fibroblast cells derived from patients with PIK3CA-related overgrowth spectrum (PROS)
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Postzygotic mutations of the PIK3CA [phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha] gene constitutively activate the PI3K/AKT/mTOR pathway in PIK3CA-related overgrowth spectrum (PROS) patients, causing congenital mosaic tissue overgrowth that even multiple surgeries cannot solve. mTOR inhibitors are empirically tested and given for compassionate use in these patients. PROS patients could be ideal candidates for enrolment in trials with PI3K/AKT pathway inhibitors, considering the “clean” cellular setting in which a unique driver, a PIK3CA mutation, is present. We aimed to assess the effects of blocking the upstream pathway of mTOR on PROS patient-derived cells by using ARQ 092, a potent, selective, allosteric, and experimental orally bioavailable and highly selective AKT-inhibitor with activity and long-term tolerability, currently under clinical development for treatment of cancer and Proteus syndrome. Cell samples (i.e., primary fibroblasts) were derived from cultured tissues obtained from six PROS patients [3 boys, 3 girls; aged 2 to 17 years] whose spectrum of PIK3A-related overgrowth included HHML [hemihyperplasia multiple lipomatosis; n = 1], CLOVES [congenital lipomatosis, overgrowth, vascular malformations, epidermal nevi, spinal/skeletal anomalies, scoliosis; n = 1], and MCAP [megalencephaly capillary malformation syndrome; n = 4]. We performed the following: (a) a deep sequencing assay of PI3K/AKT pathway genes in the six PROS patients’ derived cells to identify the causative mutations and (b) a pathway analysis to assess the phosphorylation status of AKT [Ser473 and Thr308] and its downstream targets [pAKTS1 (Thr246), pRPS6 (Ser235/236), and pRPS6Kβ1 (Ser371)]. The anti-proliferative effect of ARQ 092 was tested and compared to other PI3K/AKT/mTOR inhibitors [i.e., wortmannin, LY249002, and rapamycin] in the six PROS patient-derived cells. Using ARQ 092 to target AKT, a critical node connecting PI3K and mTOR pathways, we observed the following: (1) strong anti-proliferative activity [ARQ 092 at 0.5, 1, and 2.5 μM blunted phosphorylation of AKT and its downstream targets (in the presence or absence of serum) and inhibited proliferation after 72 h; rapamycin at 100 nM did not decrease AKT phosphorylation] and (2) less cytotoxicity as compared to rapamycin and wortmannin. We demonstrated the following: (a) that PROS cells are dependent on AKT; (b) the advantage of inhibiting the pathway immediately downstream of PI3K to circumventing problems depending on multiple classes a PI3K kinases; and (c) that PROS patients benefit from inhibition of AKT rather than mTOR. Clinical development of ARQ 092 in PROS patients is on going in these patients.
KeywordsPI3K/AKT/mTOR pathway PI3K/AKT/mTOR inhibitors PIK3CA mutations Rapamycin Wortmannin Mosaic neurocutaneous disorders PROS Target therapy
Congenital lipomatous overgrowth, vascular malformations, epidermal nevi, scoliosis/skeletal and spinal syndrome
Catalog of somatic mutations in cancer
Database the single nucleotide polymorphism database
Exome aggregation consortium
Exome sequencing project
Hemihyperplasia multiple lipomatosis
Fibroadipose infiltrating lipomatosis, megalencephaly-capillary malformation
PIK3CA-related overgrowth spectrum
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha (PIK3CA; MIM # 171834) gene-related overgrowth (and vascular malformation) syndromes comprise a heterogeneous group of rare, congenital, segmental overgrowth phenotypes underlying somatic activating mutations of genes in the PI3K/AKT/mTOR pathway [1, 2, 3, 4, 5, 6]. A wide spectrum of tissues is involved in such abnormal developmental syndromes with increased growth, including brain, blood, fat, skin, vasculatures, and connective tissues [1, 2, 4, 5]. The association of benign and malignant tumors is not common but has been reported [7, 8, 9].
The whole spectrum of clinical abnormalities related to PIK3CA mutations [1,2,9] is now called PIK3CA-related overgrowth spectrum (PROS) and includes the following [1, 2, 3, 10, 11]: fibroadipose (and bone) hyperplasia or overgrowth (FAO) [12, 13]; hemihyperplasia multiple lipomatosis (HHML) ; type I macrodactyly and muscle hemihypertrophy (HH) ; facial infiltrating lipomatosis (FIL) ; isolated large lymphatic malformation (ILM) [16, 17]; epidermal nevi (EN), seborrheic keratosis (SK) , and benign lichenoid keratosis (BLK) [18, 19]; congenital lipomatous overgrowth, vascular malformations, epidermal nevi, scoliosis/skeletal and spinal (CLOVES; MIM # 612918) syndrome [6, 20]; Klippel-Trenaunay syndrome (KTS; MIM # 149000) ; and the related megalencephaly syndromes comprising megalencephaly-capillary malformation polymicrogyria syndrome (MCAP; previously/also known as macrocephaly-capillary malformation, MCM or macrocephaly-cutis marmorata telangiectatica congenita, MCMTC; MIM # 602501) , hemimegalencephaly (HMEG)  and dysplastic megalencephaly (DMEG) ; and venous malformation in the event of PIK3CA mutations .
In addition, other asymmetric overgrowth syndromes exist in the following: (1) the PI3K/AKT signaling pathway [1, 2] including Proteus syndrome (PS; MIM # 176920), caused by somatic activating mutations of AKT1 [v-AKT murine thymoma viral oncogene homolog; AKT1-E17K] (on chromosome 14q32.33) ; hypoinsulinemic hypoglycaemia with hemihypertrophy (HIHGHH; MIM # 240900), caused by somatic activating mutations of AKT2 (on chromosome 19q13.2) ; megalencephaly-polymicrogyria-polydactyly hydrocephalus syndrome (MPPH2; MIM # 615937), caused by somatic activating mutations of AKT3 (on chromosome 19q43-q44) ; and (2) in the PI3K/PTEN signaling pathway [1, 2] including the Bannayan-Riley-Ruvalcaba syndrome (BRRS; MIM # 153480)  and the Cowden (Lhermitte-Duclos) syndrome 1 (CWS1; MIM # 153850), caused by mutations in the PTEN [phosphatase and tensin homolog] gene (on chromosome 10q23.31) [9,30].
Currently, no drugs have been approved for the treatment of these diseases, and surgery or symptomatic therapies are the only feasible interventions. With the development of genetic detection technologies, so far two critical genes, PIK3CA and AKT, have been identified with activating mutations in the PI3K/AKT pathway. The constitutive activation of PI3K and AKT (AKT1 or 3) is causative for the initiation and progression of overgrowth syndromes [1, 2, 3, 6].
The PI3K/AKT signaling pathway plays a very important role in biological processes including cell growth and proliferation, metastasis, protein synthesis, angiogenesis, and survival [31, 32, 33]. Aberrant activation of this pathway has been associated with various types of cancers. Mutations of PIK3CA (6–35%) are more frequent in cancers as compared to AKT1 mutations (0–8%) [34, 35]. Activating mutations of PIK3CA lead to increased PI3K activity, resulting in a higher output of PIP3 (phosphatidylinositol (3, 4, 5)-trisphosphate). Subsequently, PIP3 recruits AKT to plasma membrane where AKT is fully activated upon phosphorylation of T308 and S473 by PDK1 and mTORC2. Activating mutations of AKT1 (e.g., AKT1-E17K) not only utilize PIP3 but also increase its affinity to PIP2 by more than 100-fold compared to wild-type AKT1 . Thus, both PIP2 and PIP3 apparently convert inactive confirmation of AKT to an active confirmation by binding to the PH domain and enhance the membrane recruitment and its activity. Once activated, AKT activates downstream targets (i.e., PRAS40), but suppresses TSC1/TSC2 activity [37, 38, 39]. As a critical node linking PI3K and mTOR pathways, AKT has become an ideal target for therapeutic intervention, and AKT inhibitors are being developed in various stages . Thus, inhibition of AKT should be beneficial for patients with overgrowth syndromes driven by activating mutations of PIK3CA and AKT. Generation of mouse models to reflect the phenotypes of patients with overgrowth syndromes is challenging. So far, only mouse models with MCAP have been established, when activating PIK3CA mutations were introduced and accurately recapitulated several key human symptoms such as enlarged brain, cortical malformation, hydrocephalus, and epilepsy. Inhibition of PI3K activity in these mice, using PI3K inhibitors, alleviated some symptoms such as epilepsy . Our previous studies showed that in primary PROS patient-derived cells, the PI3K pathway is overactive even in the absence of mitogens in culture, and their proliferation is PI3K-dependent for all mutations analyzed : patients’ derived cells displayed a significant impairment of the proliferation rate upon treatment with PI3K inhibitors .
ARQ 092 is an orally bioavailable allosteric AKT inhibitor with high potency and selectivity. Both biochemical and cellular studies showed that ARQ 092 inhibited AKT activity through binding to its active and inactive forms. Cancer cell lines or patient-derived tumors harboring PIK3CA or AKT1-E17K mutations exhibited increased sensitivity to ARQ 092 treatment . Somatic mutations of (a) AKT1 E17K have been associated with Proteus syndrome and a number of cancers [26, 43]; (b) AKT2 with lipodystrophy and hypoglycaemia ; and AKT3 with neuronal migration defects and hemimegalencephaly . Targeting AKT permits the inhibition of the PI3K pathway closely downstream of this kinase but upstream of mTOR and circumvents the activation of additional pathways dependent on multiple classes and isoforms of PI3K kinases .
Herein, we report our findings on PROS patient-derived cells obtained from six affected individuals with extremely heterogeneous phenotypes (spanning from macrodactyly to MCAP) harboring different activating mutations of the PIK3CA gene at different frequencies in affected tissues. ARQ 092 showed higher anti-proliferative activity with lower cytotoxicity as compared to other PI3K inhibitors [e.g., mTOR inhibitors] [42, 45], thus indicating that (a) PROS-derived cells are dependent on AKT activity and (b) inhibition of mTORC1 does not represent a solid option in treating PROS patients. Our preclinical results suggest that ARQ 092 may be more effective, clinically, than other therapeutic options currently available, which show only a limited benefit.
Subjects and methods
Patients and clinical findings
Patient 1 [hemihyperplasia multiple lipomatosis, HHML]
Patient 2 [congenital lipomatous overgrowth, vascular malformations, epidermal nevi, scoliosis/skeletal and spinal, CLOVES syndrome]
This 2-year-old boy is the second child of a healthy 27-year-old woman and a non-consanguineous 28-year-old healthy man. Their family history was unremarkable. He was conceived naturally and was born at term after an uncomplicated pregnancy: his fetal ultrasounds were normal. His birth weight was 3650 g (75th percentile), length 52 cm (75th percentile), and head circumference 33 cm (50th percentile). Postnatally, increased growth of the trunk, widespread cutaneous capillary malformations, and gigantism with exadactyly of the right hand became evident, suggestive for a complex lymphatic-arteriovenous overgrowth malformation. Upon monthly follow-up visits, weight and length growth were regular; however, subcutaneous masses (Fig. 1A, 1B) and increased growth of the hand became more evident (Fig. 1B: 3,5). His development was apparently normal. MRI and computerized tomographic (CT) scans revealed vascular malformations and vesicles within the masses noted in the trunk, with variable extension into the retroperitoneal and mediastinum regions; x-ray examination of the hands confirmed the skeletal exadactyly of the right hand; histological examination of the affected (and unaffected) tissues confirmed the initial hypothesis of a mixed lymphatic-arteriovenous malformation in the spectrum of CLOVES syndrome. Skin biopsies from the affected (and unaffected contralateral) regions were obtained during these procedures (Fig. 1b).
Patient 3 [megalencephaly-capillary malformation polymicrogyria syndrome, MCAP]
This 17-year-old boy was the only child born to non-consanguineous parents. His father and grandfather showed diffuse angiomatosis. He was conceived naturally. His fetal ultrasound scan showed IUGR. At birth, a diffuse capillary malformation involving the trunk and limbs was recorded. At age 3 months, he was noted to have left asymmetric overgrowth. During his follow-up visits, cardiac and abdominal ultrasound scans were repeatedly normal. Early developmental milestones were delayed, and at age 7 months, a brain MRI scan revealed focal hemimegalencephaly with right perisylvian polymicrogyria. From age 5 years, he started to manifest episodes of generalized tonic-clonic seizures, which proved to be refractory to antiepileptic therapy. He was severely cognitively impaired and developed an attention deficit disorder. On physical examination, at age 13 years and 8/12 months, his weight was 41.5 kg (10th–25th percentile), height 154.2 cm (10th–25th percentile), and head circumference 50.2 cm (2 SD < 3rd percentile). He had left asymmetric overgrowth, involving the face, trunk, and limbs (mainly the legs) with diffusely soft and thick irregularly marbled skin and prominent capillaries and veins on the trunk, abdomen, and limbs. His 2nd and 3rd left toes were significantly larger than the contralateral and showed proximal cutaneous syndactyly. Besides the increased growth, he had dysmorphic features including malar hypoplasia, long philtrum and high palate, and S-shaped scoliosis. Skin biopsies from the affected (and unaffected contralateral) skin regions were obtained.
Patient 4 [megalencephaly-capillary malformation polymicrogyria syndrome, MCAP]
This was the only child of healthy unrelated parents. His family history was unremarkable. Pregnancy was normal and repeated prenatal ultrasound evaluations were within normal limits. He was born at term through cesarean section because of breech presentation. Birth weight, length, and head circumference were at the 50th percentiles. Apgar scores were 10/10 at 5 and 10 min. Since birth multiple skin haemangiomas and diffuse capillary malformations were evident on the trunk, upper, and lower limbs. Mild facial asymmetry (right > left) was evident (Fig. 1c 1). He was first referred to one of our institutions at age 14 months. Physical growth and psychomotor development were normal; a relative macrocephaly was evident with no dysmorphic signs; no major malformations of internal organs were present. Cerebral MRI showed mild cranial asymmetry (right > left) and mildly ectopic cerebellar tonsils. Facial MRI confirmed right soft tissue hypertrophy. Physical examination and follow-up controls confirmed the facial asymmetry, the vascular malformation and the syndactyly of the toes (Fig. 1c). Skin biopsies from the affected (and unaffected contralateral) skin regions were obtained.
Patients 5 [type 1 macrodactyly] and 6 [megalencephaly-capillary malformation polymicrogyria syndrome, MCAP]
These patients were previously reported and are identifiable as patients 2 and 1, respectively [see reference 11]. Samples for this study were obtained from skin biopsies from the affected (and unaffected contralateral) skin regions.
All patients (and/or their guardians) signed (or had previously signed [patients nos. 5 and 6 in reference 11] an informed consent approved by the local ethics committees to participate in this study and to authorize the publication of their clinical images. Blood and tissue samples were collected locally at the clinical centers and analyzed by means of the methods hereby reported.
DNA extraction and Sanger sequencing
Genomic DNA was extracted from peripheral blood cells (PBCs) and tissue samples using the QIAamp Mini Kit (Qiagen, Hilden, Germany), according to the manufacturer’s instructions, and quantified on a Bio Spectrometer Plus (Eppendorf, Hamburg, Germany). The entire coding region of the PIK3CA gene was sequenced and analyzed according to the methods indicated in our previous report .
Targeted deep sequencing
The Ion AmpliSeq Custom Panel of the 21 genes involved in the PI3K/AKT/mTOR pathway (i.e., PIK3R1, PIK3R2, PIK3CA, PTEN, PDK1,PDK2, KRAS, AKT1, AKT2, AKT3, RICTOR, MAPKAP1, MLST8, MTOR, IRS1, GAB1,GAB2, THEM4, MAPK8I1, PTPN11, and RAPTOR) was used according to our previous report . Sequencing runs were performed on a Ion Torrent Personal Genome Machine (Life Technologies) using the Ion PGM Sequencing Hi-Q 200 Kit (Life Technologies), according to the manufacturer’s instructions .
Data analysis was performed using the Torrent Suite Software v5.0.5 (Life Technologies). Reads were aligned to the hg19 human reference genome from the UCSC Genome Browser (http://genome.ucsc.edu/) and to the BED file designed using Ion AmpliSeq Designer. Alignments were visually verified with the software Alamut® v2.8.0 (Interactive Bio software) (Fig. S1).
The mean average read depth and the percentage of reads mapping on the ROI out of the total number of reads (reads on target) were calculated using the Coverage Analysis plugin (Torrent Suite v5.0.5 software, Life Technologies). For each sample, the percentage of ROI with a minimum coverage of 100× was calculated using the amplicon coverage matrix file (Table S1).
Variant calling was performed with the Variant Caller plugin configured with somatic high stringency parameters. Variants were annotated using the Ion Reporter 5.0 software (https://ionreporter.lifetechnologies.com/ir/). Common single nucleotide variants (minor allele frequency [MAF] > 5%), exonic synonymous variants, and intronic variants were removed from the analysis, while exonic non-synonymous, splice site, and loss-of-function variants were analyzed.
The sequence analysis software Alamut® v2.8.0 (Interactive Bio software) was used to interpret variants. Online databases, including dbSNP (database the single nucleotide polymorphism database), 1000 Genomes, ClinVar, EXAC (exome aggregation consortium), COSMIC (catalog of somatic mutations in cancer), ESP (exome sequencing project) were used. The pathogenicity prediction programs such as PolyPhen2, SIFT, Mutation Taster, and splice prediction programs were used to evaluate variants not previously described.
Cell culture and reagents
Patient-derived primary fibroblasts were isolated according to our previous report (11) and grown in RPMI supplemented with 10% FBS, 100 IU/ml penicillin, 100 μg/ml streptomycin, and 1% L-glutamine in a humidified incubator at 37 °C and 5% CO2 avoiding confluence at any time. For phosphorylation studies, cells were grown in RPMI 10% fetal bovine serum or transferred to serum free medium for 6 h prior to testing the drugs. Wortmannin (10 μM) and rapamycin (100 nM) were purchased from Sigma-Aldrich (Poole, UK) and LY294002 (25 μM) from Selleckchem (Houston, TX). ARQ 092 was synthesized by ArQule, Inc. Woburn, MA.
Cell counts/quantification of cell number
The number of primary cells was determined by counting. Cells were seeded into 24-well plates at 4.6 × 103 cells/well 1 day before treatment. The end point of the cell culture experiments was collected before cells reached confluence. Supernatants (containing dead/floating cells) were collected and the remaining adherent cells detached by trypsin/EDTA (Sigma-Aldrich). Cell pellets were re-suspended in 1× PBS and 10 μl was mixed with an equal volume of 0.01% trypan blue solution. Trypan blue exclusion test was performed to determine viable (unstained, trypan blue negative cells) vs dead cells (stained, trypan blue positive cells). The percentages of dead cells were calculated. Cell numbers were counted with Countess II Automated Cell Counter (Life Technologies). Experiments were independently repeated at least three times.
Cell proliferation assay (WST-1)
The anti-proliferative effect of ARQ 092 and of PI3K/AKT/mTOR inhibitors (wortmannin, LY294002, and rapamycin) was evaluated on PROS cells derived from the six patients enrolled in the study using the Cell Proliferation Reagent WST-1 (Roche, Mannheim, Germany) according to manufacturer’s instructions. Cells were seeded into 96-well plates at 3 × 103 cells/well 1 day before treatment. The end point of the cell culture experiments was before reaching a confluent state. After 24, 48, 72, or 96 h of drug (or DMSO) exposure, 10 μl of the Cell Proliferation Reagent WST-1 was added to each well and incubated at 37 °C in a humidified incubator for 1 h. The absorbance was measured on a microplate reader (BioTek, Seattle, USA) at 450/655 nm. Each assay was performed in three replicates, and the experiment was repeated three times. The cell proliferation was calculated as the ratio of WST-1 absorbance of treated cells to WST-1 absorbance of control cells of the same experimental group.
Immunoblotting analyses were performed according to the instructions of Cell Signaling Technology (Beverly, USA).
For each treatment, all cells grown on plates were collected and homogenized in 1× lysis buffer (50 mM Tris-HCl pH 7.4; 5 mM EDTA; 250 mM NaCl; 0.1% Triton X-100) supplemented with protease and phosphatase inhibitors (1 mM PMSF; 1.5 μM pepstatin A; 2 μM leupeptin; 10 μg/ml aprotinin, 5 mMNaF; 1 mM Na3VO4). Protein quantification was performed with MicroBCA™ Protein Assay Kit (Thermo Scientific, Cat#23235). Protein extracts of 20 μg from each sample were denatured in 5× Laemmli sample buffer. Proteins were separated in SDS-polyacrylamide gel and transferred to nitrocellulose membranes, using Trans-Blot® Turbo™ Mini Nitrocellulose Transfer (Biorad; Cat#1704158).
The blocking agents used were 5% BSA (bovin serum albumin; Sigma-Aldrich, Cat#A9418) for membranes incubated with anti-phospho antibodies and 5% nonfat dry milk (Blotting-Grade Blocker; Biorad, Cat#170-6404) for membranes incubated with anti-total antibodies.
Western blots were performed using primary antibodies at the dilution of 1:500 using 5% BSA for anti-phospho and 5% nonfat dry milk for anti-total, instead anti-ACTB was used at the dilution of 1:5000 with 5% nonfat dry milk. The antibodies used were as follows: polyclonal anti-ACTB (Sigma-Aldrich; Cat#A2066), monoclonal anti-phospho-AKT (Thr308) (Cell Signalling Technology; Cat#2965), polyclonal anti-phospho-AKT (Ser473) (Cell Signalling Technology; Cat#9271), polyclonal anti-AKT (Cell Signalling Technology; Cat#9272), monoclonal anti-phospho-AKT1S1 (Thr246) (Cell Signaling Technology; Cat#13175), monoclonal anti-AKT1S1 (Cell Signalling Technology; Cat#2691), polyclonal anti-phospho-RPS6KB1 (Ser371) (Cell Signalling Technology; Cat#9208), polyclonal anti-RPS6KB1 (Cell Signalling Technology; Cat#9202), monoclonal anti-phosho-RPS6 (Ser235/236) (Cell Signaling Technology; Cat#4858). Western blots were developed with the Clarity TM Western ECL substrate chemiluminescence reagent (Biorad, Uppsala, Sweden #1705061). The densitometric evaluation was performed by the ImageJ software.
Statistical significance of the results was analyzed using the Student’s t test. A value of P < 0.05 was considered statistically significant.
The datasets generated during and/or analyzed during the current study are not publicly available due to data and privacy protection considerations but may be available upon justified request.
ARQ 092 inhibits AKT signaling in a dose- and time-dependent manner
Phenotypes and frequency of mutations in the 6 PROS patients
PIK3CA nucleotide change
PIK3CA amino acid change
Mutation frequency biopsy (%)
Mutation frequency cells (%)
Mutation frequency blood (%)
Mutation frequency saliva (%)
c.3140A > G
c.3140A > G
c.2176G > A
c.3139C > T
c.3140A > G
c.241G > A
c.241G > A
ARQ 092 inhibits AKT downstream signaling
Discussion and conclusions
PIK3CA-related overgrowth spectrum (PROS) represents a heterogeneous group of disorders, including congenital segmental overgrowth phenotypes with somatic PIK3CA mutations characterized by overlapping clinical features with variable tissue specificity. Some of these phenotypes are associated with pleiotropic and more severe manifestations [1, 2, 3, 4, 5, 6]. PIK3CA mutations in PROS patients are identified in affected tissues at a variable frequency but are generally absent in blood and unaffected tissues [1, 2, 11]. The majority of somatic PIK3CA mutations, often strongly oncogenic, are frequently observed in several common human tumor types for which intensive efforts are under way to develop new drugs for use in common cancer therapy. PIK3CA alterations result in activated PI3K/AKT signaling [22, 32, 33, 34]. PROS patients might be regarded as appropriate candidates for enrolment in trials based on PI3K/AKT pathway inhibitors, considering also the “clean” cellular setting in which a unique driver, the PIK3CA mutation, is present versus the genomic heterogeneity seen in other PI3K/AKT driven diseases such as tumors. In this study, we evaluated the effects of ARQ 092, a novel AKT inhibitor, on primary fibroblast cultures from six PROS patients’ biopsies with identified and different PI3KCA activating mutations showing activation of the PI3K/AKT pathway. ARQ 092 is an orally bioavailable and highly selective AKT inhibitor currently under clinical development for the treatment of cancer and for patients affected by Proteus syndrome [42, 43, 44, 45]. The usefulness of targeted therapies inhibiting the PI3K/AKT/mTOR pathway in PROS patients needs to be tested using patient-derived cells bearing the same frequency of PI3KCA mutations found in most patients. The use of patient-derived cells is necessary since very few mouse models for PROS are currently available . We have previously shown that suppression of PI3K activity induced significant reduction of cell proliferation in three patient-derived fibroblasts . Herein, we demonstrated that ARQ 092 markedly showed anti-proliferative activity in all of the primary fibroblasts derived from 6 patients (including samples obtained from the two patients previously tested for PI3K inhibition) in presence or absence of growth factors . Interestingly, very high concentrations of PI3K inhibitors wortmannin and LY249002 (10 and 25 μM, respectively) exert equivalent antiproliferative effect. However, treatment with the PI3K inhibitor induced more cell death than ARQ 092, suggesting higher cytotoxic activity. Conversely, the mTOR inhibitor rapamycin at 100 nM exhibited weak anti-proliferative activity. A pathway analysis was performed to assess the changes in phosphorylation status of the AKT pathway. ARQ 092 was comparable or even more potent than PI3K inhibitors on AKT phosphorylation while rapamycin inhibited phosphorylation of ribosomal protein S6 kinase B1/S6 ribosomal protein, which indicates that ribosomal protein S6 kinase B1/S6 ribosomal protein activity may not be critical for patient-derived fibroblasts to proliferate. It has been demonstrated that ARQ 092 exerted minimal inhibition of phosphorylation of ribosomal protein S6, suggesting that inhibition of protein synthesis may not be required for the action of ARQ 092 .
As a critical node connecting the PI3K and mTOR pathways, targeting AKT has the advantage to inhibit the PI3K pathway and circumvent activation of additional pathways dependent on multiple classes and isoforms of PI3K kinases (classes I, II, and III). To date, the clinical anticancer efficacy of many PI3K inhibitors, apart from a few exceptions, is limited, because of an emerging resistance mechanism that determines reactivation of PI3K pathway or activation of complementary pro-survival pathways and significant toxicity for treated patients . It is important to highlight here that the final goal in the treatment of overgrowth disorders, differently than cancer therapy, should be the reduction of the constitutive activation of PI3K/AKT axis together with lowering cytoxicity .
Although rapamycin (sirolimus) has been tested in a phase II trial against PROS (NCT02428296), accumulated studies have shown that Rapalogs (such as sirolimus) caused only partial inhibition of mTORC1 but had no effect on mTORC2, which induces persistent survival promoting AKT signaling. In addition, such weak inhibition of mTORC1 releases negative feedback leading to rebound activation of upstream signaling . At this moment, lacking an approved therapy for this group of diseases, patients are receiving empirical therapies including mTOR inhibitors, but the ongoing testing of ARQ 092 in clinical trials may provide additional therapeutic intervention to this unmet medical need.
We are extremely grateful to all the patients and their families who took part in this study.
DCL, SDT, CR, RB, ADL, FCS performed Deep and Sanger sequencing on cell lines from affected individuals and did the interpretation of data and performed immunoblot experiments; VG, PS, AP, performed cell proliferation assays and did the interpretation of data; AB, AS, DM, ML, MR provided clinical data, performed biopsies from PROS patient and reviewed the manuscript; GA,YY, conceived the study design, analysis, and interpretation of data, drafting, and revising the paper; CS, contributed to the study design and analysis and interpretation of data and reviewed the manuscript; NR, conceived the study design, analysis and interpretation of data, drafting and revising the article.
This study was partially supported by the Italian Health Ministry [Ministero della Salute: RF-2011-02352088 to Dr. Nicoletta Resta]; by the University Fundings [Fondi D’Ateneo/Conto Terzi] from the University of Bari “Aldo Moro” [to Dr. Nicoletta Resta]; by an ‘Investigator Grant 2014’ from the Italian Association for Cancer Research (AIRC) [IG15696 to Dr. Cristiano Simone]; by a FIRB-Futuro in Ricerca RBFR12VP3Q_003 from the Italian Ministry of School, University and Research [MIUR: to Dr. Cristiano Simone]; by a grant from “Giovani Ricercatori” 2011-2012’ GR-2011-02351968 from the Italian MOH [to Dr. Cristiano Simone]; and by a grant from “Ricerca Finalizzata” 2011-2012’ [RF-2011-02352088 from the Italian MOH to Dr. Cristiano Simone].
Compliance with ethical standards
All patients (and/or their guardians) signed (or had previously signed [patients nos. 5 and 6 in reference 11] an informed consent approved by the local ethics committees to participate in this study and to authorize the publication of their clinical images.
D. C. Loconte, V. Grossi, S. Di Tommaso, C. Ranieri, P. Sanese, R. Bagnulo, G. Forte, F.C. Susca, A. Peserico, A. De Luisi, A. Bartuli, A. Selicorni, D. Melis, M.Lerone, A.D. Praticò, M. Ruggieri, C. Simone, N. Resta declare that no competing interest exist. G. Abbadessa and Y. Yu are employees of ArQule, Inc.
Ethics approval and consent to participate
All patients (and/or their guardians) signed an informed consent approved by the local Ethics Committee at the “Azienda Ospedaliero-Universitaria Consorziale Policlinico di Bari” “Aldo Moro” to participate in this study and to authorize the publication of clinical images.
- 1.Keppler-Noreuil KM, Sapp JC, Lindhurst MJ, Parker VE, Blumhorst C, Darling T, Tosi LL, Huson SM, Whitehouse RW, Jakkula E, Grant I, Balasubramanian M, Chandler KE, Fraser JL, Gucev Z, Crow YJ, Brennan LM, Clark R, Sellars EA, Pena LD, Krishnamurty V, Shuen A, Braverman N, Cunningham ML, Sutton VR, Tasic V, Graham JM Jr, Geer J Jr, Henderson A, Semple RK, Biesecker LG (2014) Clinical delineation and natural history of the PIK3CA-related overgrowth spectrum. Am J Med Genet A 164A(7):1713–1733. https://doi.org/10.1002/ajmg.a.36552 CrossRefPubMedGoogle Scholar
- 2.Keppler-Noreuil KM, Rios JJ, Parker VE, Semple RK, Lindhurst MJ, Sapp JC, Alomari A, Ezaki M, Dobyns W, Biesecker LG (2015) PIK3CA-related overgrowth spectrum (PROS): diagnostic and testing eligibility criteria, differential diagnosis, and evaluation. Am J Med Genet A 167A(2):287–295. https://doi.org/10.1002/ajmg.a.36836 CrossRefPubMedGoogle Scholar
- 6.Martinez-Lopez A, Blasco-Morente G, Perez-Lopez I, Herrera-Garcia JD, Luque-Valenzuela M, Sanchez-Cano D, Lopez-Gutierrez JC, Ruiz-Villaverde R, Tercedor-Sanchez J (2017) CLOVES syndrome: review of a PIK3CA-related overgrowth spectrum (PROS). Clin Genet 91(1):14–21. https://doi.org/10.1111/cge.12832 CrossRefPubMedGoogle Scholar
- 7.Raju RR, Hart WR, Magnuson DK, Reid JR, Rogers DG (2002) Genital tract tumors in Proteus syndrome: report of a case of bilateral paraovarian endometrioid cystic tumors of borderline malignancy and review of the literature. Mod Pathol 15(2):172–180. https://doi.org/10.1038/modpathol.3880510 CrossRefPubMedGoogle Scholar
- 10.Luks VL, Kamitaki N, Vivero MP, Uller W, Rab R, Bovée JV, Rialon KL, Guevara CJ, Alomari AI, Greene AK, Fishman SJ, Kozakewich HP, Maclellan RA, Mulliken JB, Rahbar R, Spencer SA, Trenor CC 3rd, Upton J, Zurakowski D, Perkins JA, Kirsh A, Bennett JT, Dobyns WB, Kurek KC, Warman ML, McCarroll SA, Murillo R (2015) Lymphatic and other vascular malformative/overgrowth disorders are caused by somatic mutations in PIK3CA. J Pediatr 166(4):1048–1054. https://doi.org/10.1016/j.jpeds.2014.12.069 CrossRefPubMedPubMedCentralGoogle Scholar
- 11.Loconte DC, Grossi V, Bozzao C, Forte G, Bagnulo R, Stella A, Lastella P, Cutrone M, Benedicenti F, Susca FC, Patruno M, Varvara D, Germani A, Chessa L, Laforgia N, Tenconi R, Simone C, Resta N (2015) Molecular and functional characterization of three different postzygotic mutations in PIK3CA-related overgrowth Spectrum (PROS) patients: effects on PI3K/AKT/mTOR signaling and sensitivity to PIK3 inhibitors. PLoS One 10(4):e0123092. https://doi.org/10.1371/journal.pone.0123092 CrossRefPubMedPubMedCentralGoogle Scholar
- 12.Lindhurst MJ, Parker VE, Payne F, Sapp JC, Rudge S, Harris J, Witkowski AM, Zhang Q, Groeneveld MP, Scott CE, Daly A, Huson SM, Tosi LL, Cunningham ML, Darling TN, Geer J, Gucev Z, Sutton VR, Tziotzios C, Dixon AK, Helliwell T, O'Rahilly S, Savage DB, Wakelam MJ, Barroso I, Biesecker LG, Semple RK (2012) Mosaic overgrowth with fibroadipose hyperplasia is caused by somatic activating mutations in PIK3CA. Nat Genet 44(8):928–933. https://doi.org/10.1038/ng.2332 CrossRefPubMedPubMedCentralGoogle Scholar
- 13.Takenouchi T, Sakamoto Y, Torii C, Hata K, Kosaki R, Kosaki K (2015) Mosaic overgrowth with fibroadipose hyperplasia due to AKT1 mutation. Am J Med Genet A 167A:287–295Google Scholar
- 15.Maclellan RA, Luks VL, Vivero MP, Mulliken JB, Zurakowski D, Padwa BL, Warman ML, Greene AK, Kurek KC (2014) PIK3CA activating mutations in facial infiltrating lipomatosis. Plast Reconstr Surg 133(1):12e–19e. https://doi.org/10.1097/01.prs.0000436822.26709.7c CrossRefPubMedGoogle Scholar
- 18.Hafner C, López-Knowles E, Luis NM, Toll A, Baselga E, Fernández-Casado A, Hernández S, Ribé A, Mentzel T, Stoehr R, Hofstaedter F, Landthaler M, Vogt T, Pujol RM, Hartmann A, Real FX (2007) Oncogenic PIK3CA mutations occur in epidermal nevi and seborrheic keratoses with a characteristic mutation pattern. Proc Natl Acad Sci U S A 104(33):13450–13454. https://doi.org/10.1073/pnas.0705218104 CrossRefPubMedPubMedCentralGoogle Scholar
- 20.Kurek KC, Luks VL, Ayturk UM, Alomari AI, Fishman SJ, Spencer SA, Mulliken JB, Bowen ME, Yamamoto GL, Kozakewich HP, Warman ML (2012) Somatic mosaic activating mutations in PIK3CA cause CLOVES syndrome. Am J Hum Genet 90(6):1108–1115. https://doi.org/10.1016/j.ajhg.2012.05.006 CrossRefPubMedPubMedCentralGoogle Scholar
- 22.Rivière JB, Mirzaa GM, O'Roak BJ, Beddaoui M, Alcantara D, Conway RL, St-Onge J, Schwartzentruber JA, Gripp KW, Nikkel SM, Worthylake T, Sullivan CT, Ward TR, Butler HE, Kramer NA, Albrecht B, Armour CM, Armstrong L, Caluseriu O, Cytrynbaum C, Drolet BA, Innes AM, Lauzon JL, Lin AE, Mancini GM, Meschino WS, Reggin JD, Saggar AK, Lerman-Sagie T, Uyanik G, Weksberg R, Zirn B, Beaulieu CL, Finding of Rare Disease Genes (FORGE) Canada Consortium, Majewski J, Bulman DE, O'Driscoll M, Shendure J, Graham JM Jr, Boycott KM, Dobyns WB (2012) De novo germline and postzygotic mutations in AKT3, PIK3R2 and PIK3CA cause a spectrum of related megalencephaly syndromes. Nat Genet 44(8):934–940. https://doi.org/10.1038/ng.2331 CrossRefPubMedPubMedCentralGoogle Scholar
- 23.Lee JH, Huynh M, Silhavy JL, Kim S, Dixon-Salazar T, Heiberg A, Scott E, Bafna V, Hill KJ, Collazo A, Funari V, Russ C, Gabriel SB, Mathern GW, Gleeson JG (2012) De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly. Nat Genet 44(8):941–945. https://doi.org/10.1038/ng.2329 CrossRefPubMedPubMedCentralGoogle Scholar
- 24.Jansen LA, Mirzaa GM, Ishak GE, O'Roak BJ, Hiatt JB, Roden WH, Gunter SA, Christian SL, Collins S, Adams C, Rivière J-B, St-Onge J, Ojemann JG, Shendure J, Hevner RF, Dobyns WB (2015) PI3K/AKT pathway mutations cause a spectrum of brain malformations from megalencephaly to focal cortical dysplasia. Brain 138(6):1613–1628. https://doi.org/10.1093/brain/awv045 CrossRefPubMedPubMedCentralGoogle Scholar
- 26.Lindhurst MJ, Sapp JC, Teer JK, Johnston JJ, Finn EM, Peters K, Turner J, Cannons JL, Bick D, Blakemore L, Blumhorst C, Brockmann K, Calder P, Cherman N, Deardorff MA, Everman DB, Golas G, Greenstein RM, Kato BM, Keppler-Noreuil KM, Kuznetsov SA, Miyamoto RT, Newman K, Ng D, O'Brien K, Rothenberg S, Schwartzentruber DJ, Singhal V, Tirabosco R, Upton J, Wientroub S, Zackai EH, Hoag K, Whitewood-Neal T, Robey PG, Schwartzberg PL, Darling TN, Tosi LL, Mullikin JC, Biesecker LG (2011) A mosaic activating mutation in AKT1 associated with the Proteus syndrome. New Engl J Med 365(7):611–619. https://doi.org/10.1056/NEJMoa1104017 CrossRefPubMedPubMedCentralGoogle Scholar
- 27.Hussain K, Challis B, Rocha N, Payne F, Minic M, Thompson A, Daly A, Scott C, Harris J, Smillie BJ, Savage DB, Ramaswami U, De Lonlay P, O'Rahilly S, Barroso I, Semple RK (2011) An activating mutation of AKT2 and human hypoglycemia. Science 334(6055):474. https://doi.org/10.1126/science.1210878 CrossRefPubMedPubMedCentralGoogle Scholar
- 28.Poduri A, Evrony GD, Cai X, Elhosary PC, Beroukhim R, Lehtinen MK, Hills LB, Heinzen EL, Hill A, Hill RS, Barry BJ, Bourgeois BF, Riviello JJ, Barkovich AJ, Black PM, Ligon KL, Walsh CA (2012) Somatic activation of AKT3 causes hemispheric developmental brain malformations. Neuron 74(1):41–48. https://doi.org/10.1016/j.neuron.2012.03.010 CrossRefPubMedPubMedCentralGoogle Scholar
- 30.Liaw D, Marsh DJ, Li J, Dahia PL, Wang SI, Zheng Z, Bose S, Call KM, Tsou HC, Peacocke M, Eng C, Parsons R (1997) Germline mutations of the PTEN gene in Cowden disease, an inherited breast and thyroid cancer syndrome. Nat Genet 16(1):64–67. https://doi.org/10.1038/ng0597-64 CrossRefPubMedGoogle Scholar
- 43.Wang Q, Chen X, Hay N (2017) Akt as a target for cancer therapy: more is not always better (lessons from studies in mice). Br J Cancer 19:63 doi: https://doi.org/10.1186/s13058-017-0854-1
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